11-57156185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156185
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156185
    reference: chr 11
allele count: 2
allele frequency: 1.658622348277521e-5
allele num: 120582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.710G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.334-4G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1227-4G>A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.367-4G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.367-4G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9453
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3522
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.75e1
  variant carriers: 0
hgvs: c.367-4G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

11-57156203-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156203
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156203
    reference: chr 11
allele count: 2
allele frequency: 1.665944757271849e-5
allele num: 120052
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.367-22T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.334-22T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1227-22T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.692T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.367-22T>C
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15759
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7981
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/11-57156205-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156205
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156205
    reference: chr 11
allele count: 1
allele frequency: 8.333750020834376e-6
allele num: 119994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.367-24T>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.367-24T>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.334-24T>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1227-24T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.690T>G
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2576
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3801
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

11-57156211-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156211
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156211
    reference: chr 11
allele count: 2
allele frequency: 1.66908684258842e-5
allele num: 119826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.684C>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1227-30C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.367-30C>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.334-30C>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.367-30C>G
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15250
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5066
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7974
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8913
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

11-57156222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156222
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156222
    reference: chr 11
allele count: 4
allele frequency: 3.353510286892805e-5
allele num: 119278
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.367-41G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.673G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1227-41G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.367-41G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.334-41G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6644
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15434
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7929
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4876
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-57156226-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156226
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156226
    reference: chr 11
allele count: 1
allele frequency: 8.419209267865562e-6
allele num: 118776
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.669T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.334-45T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.367-45T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1227-45T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.367-45T>C
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2574
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11320
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5976
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4313
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3560
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7924
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

11-57156233-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156233
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156233
    reference: chr 11
allele count: 1
allele frequency: 8.465823470648991e-6
allele num: 118122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1227-52G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.367-52G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.367-52G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.662G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.334-52G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4997
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4266
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4738
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5418
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3762
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3541
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

11-57156435-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156435
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156435
    reference: chr 11
allele count: 4
allele frequency: 3.52112676056338e-5
allele num: 113600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.460G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+81G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+48G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+48G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+48G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23795
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14249
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

11-57156437-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156437
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156437
    reference: chr 11
allele count: 1
allele frequency: 8.798015167778149e-6
allele num: 113662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+79G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+46G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+46G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.458G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+46G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3994
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

11-57156438-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156438
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156438
    reference: chr 11
allele count: 43158
allele frequency: 3.774202011368605e-1
allele num: 114350
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+45T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+45T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+45T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.457T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+78T>C
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6258
  bin: 3.25e1
  variant carriers: 2460
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.75e1
  variant carriers: 624
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 3.75e1
  variant carriers: 3499
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 4.75e1
  variant carriers: 4634
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.25e1
  variant carriers: 887
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 7.5e0
  variant carriers: 1158
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 5.25e1
  variant carriers: 4087
genotype depth: GenotypeDepth
  all individuals: 11914
  bin: 2.75e1
  variant carriers: 1628
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.25e1
  variant carriers: 369
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 2.25e1
  variant carriers: 1222
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.75e1
  variant carriers: 1402
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 6.25e1
  variant carriers: 2307
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 1.75e1
  variant carriers: 1166
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.5e0
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 1.25e1
  variant carriers: 1702
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 9.75e1
  variant carriers: 580
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 4.25e1
  variant carriers: 4210
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.75e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 5.75e1
  variant carriers: 3186
genotype quality: GenotypeQuality
  all individuals: 33988
  bin: 9.75e1
  variant carriers: 32361
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 6.75e1
  variant carriers: 177
genotype quality: GenotypeQuality
  all individuals: 13390
  bin: 6.25e1
  variant carriers: 182
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.25e1
  variant carriers: 201
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.75e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 1.75e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 3.25e1
  variant carriers: 215
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.75e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 8.75e1
  variant carriers: 231
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.25e1
  variant carriers: 132
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 7.25e1
  variant carriers: 206
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.5e0
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 9.25e1
  variant carriers: 285
num of homozygotes: 8704
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

11-57156441-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156441
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156441
    reference: chr 11
allele count: 6
allele frequency: 5.216937657594992e-5
allele num: 115010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.454G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+42G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+42G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+42G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+75G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4104
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34201
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7541
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

11-57156442-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156442
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156442
    reference: chr 11
allele count: 6
allele frequency: 5.219388287692683e-5
allele num: 114956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+41C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+41C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+41C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.453C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+74C>T
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4066
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 34559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-57156447-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156447
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156447
    reference: chr 11
allele count: 2
allele frequency: 1.7322316340141e-5
allele num: 115458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+69T>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+36T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.448T>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+36T>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+36T>G
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35436
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

11-57156449-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156449
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156449
    reference: chr 11
allele count: 1
allele frequency: 8.670470112889521e-6
allele num: 115334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.446C>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+34C>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+34C>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+67C>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+34C>A
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35583
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7584
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

11-57156450-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156450
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156450
    reference: chr 11
allele count: 1
allele frequency: 8.652914301536758e-6
allele num: 115568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+33G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+33G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.445G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+66G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+33G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

11-57156451-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156451
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156451
    reference: chr 11
allele count: 1
allele frequency: 8.642444774777888e-6
allele num: 115708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+32A>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.444A>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+32A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+32A>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+65A>G
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4052
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35806
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

11-57156451-TCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156451
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156449
    reference: chr 11
allele count: 1
allele frequency: 8.642444774777888e-6
allele num: 115708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+30_1226+31delGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+63_333+64delGG
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.442_443delGG
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+30_366+31delGG
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+30_366+31delGG
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: TCC
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

11-57156455-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156455
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156456
    reference: chr 11
allele count: 1
allele frequency: 8.616529951058109e-6
allele num: 116056
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.439_440insC
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+60_333+61insC
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+27_366+28insC
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+27_1226+28insC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+27_366+28insC
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36129
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4042
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

11-57156456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156456
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156456
    reference: chr 11
allele count: 1
allele frequency: 8.616529951058109e-6
allele num: 116056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+27G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+60G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.439G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+27G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+27G>A
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35919
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

11-57156474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156474
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156474
    reference: chr 11
allele count: 1
allele frequency: 8.496176720475786e-6
allele num: 117700
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+9C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+9C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+42C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+9C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.421C>T
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

11-57156474-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156474
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156474
    reference: chr 11
allele count: 1
allele frequency: 8.496176720475786e-6
allele num: 117700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.421C>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+9C>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+9C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+9C>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+42C>A
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4040
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7802
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP

11-57156475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156475
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156475
    reference: chr 11
allele count: 1
allele frequency: 8.489108473828079e-6
allele num: 117798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+8G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+8G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.420G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+41G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+8G>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27610
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7814
  bin: 6.75e1
  variant carriers: 0
hgvs: c.366+8G>A
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/11-57156482-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156482
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156482
    reference: chr 11
allele count: 2
allele frequency: 1.684721262867059e-5
allele num: 118714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+1G>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+1G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.413G>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+34G>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+1G>T
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27882
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
hgvs: c.366+1G>T
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

11-57156482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156482
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156482
    reference: chr 11
allele count: 1
allele frequency: 8.423606314335294e-6
allele num: 118714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366+1G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366+1G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226+1G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+34G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.413G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13882
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4035
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
hgvs: c.366+1G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

11-57156483-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156483
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156483
    reference: chr 11
allele count: 2
allele frequency: 1.683189981653229e-5
allele num: 118822
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.366G>A
  hgvsp: ENSP00000312134.5:p.Trp122Ter
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1226G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+33G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.412G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.366G>A
  hgvsp: ENSP00000433016.1:p.Trp122Ter
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.681G>A
  hgvsp: ENSP00000431536.1:p.Trp227Ter
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7876
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38775
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Trp227Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-57156498-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156498
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156498
    reference: chr 11
allele count: 24
allele frequency: 1.99527784243956e-4
allele num: 120284
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.351G>A
  hgvsp: ENST00000311862.5:c.351G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.351G>A
  hgvsp: ENST00000525955.1:c.351G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.397G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1211G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.666G>A
  hgvsp: ENST00000529411.1:c.666G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+18G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14691
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28497
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4047
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2294
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr222Thr
num of homozygotes: 1
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

11-57156499-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156499
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156499
    reference: chr 11
allele count: 6
allele frequency: 4.98065844304617e-5
allele num: 120466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.396C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.665C>T
  hgvsp: ENSP00000431536.1:p.Thr222Met
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.350C>T
  hgvsp: ENSP00000433016.1:p.Thr117Met
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.350C>T
  hgvsp: ENSP00000312134.5:p.Thr117Met
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1210C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+17C>T
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4027
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr222Met
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

11-57156503-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156503
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156503
    reference: chr 11
allele count: 2
allele frequency: 1.656891009709381e-5
allele num: 120708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.392C>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1206C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.346C>A
  hgvsp: ENSP00000433016.1:p.Gln116Lys
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.346C>A
  hgvsp: ENSP00000312134.5:p.Gln116Lys
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+13C>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.661C>A
  hgvsp: ENSP00000431536.1:p.Gln221Lys
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln221Lys
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

11-57156506-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156506
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156506
    reference: chr 11
allele count: 64
allele frequency: 5.294944982212294e-4
allele num: 120870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+10C>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.343C>G
  hgvsp: ENSP00000433016.1:p.Leu115Val
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1203C>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.343C>G
  hgvsp: ENSP00000312134.5:p.Leu115Val
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.658C>G
  hgvsp: ENSP00000431536.1:p.Leu220Val
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.389C>G
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28700
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40789
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu220Val
num of homozygotes: 1
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/11-57156514-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156514
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156514
    reference: chr 11
allele count: 2
allele frequency: 1.652346331791144e-5
allele num: 121040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.333+2T>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.381T>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.335T>G
  hgvsp: ENSP00000312134.5:p.Val112Gly
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.650T>G
  hgvsp: ENSP00000431536.1:p.Val217Gly
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1195T>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.335T>G
  hgvsp: ENSP00000433016.1:p.Val112Gly
  variant of: http://identifiers.org/hgnc/9362
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10075
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4001
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40824
  bin: 6.25e1
  variant carriers: 0
hgvs: c.333+2T>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

11-57156521-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156521
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156521
    reference: chr 11
allele count: 1
allele frequency: 8.302475798283047e-6
allele num: 120446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.328C>T
  hgvsp: ENSP00000433016.1:p.Leu110Phe
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.328C>T
  hgvsp: ENSP00000433231.1:p.Leu110Phe
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.643C>T
  hgvsp: ENSP00000431536.1:p.Leu215Phe
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.374C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1188C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.328C>T
  hgvsp: ENSP00000312134.5:p.Leu110Phe
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40334
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu215Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

11-57156522-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156522
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156522
    reference: chr 11
allele count: 4
allele frequency: 3.319887787792772e-5
allele num: 120486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.373C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.327C>T
  hgvsp: ENST00000525955.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.327C>T
  hgvsp: ENST00000533605.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.642C>T
  hgvsp: ENST00000529411.1:c.642C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1187C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.327C>T
  hgvsp: ENST00000311862.5:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40383
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr214Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-57156524-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156524
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156524
    reference: chr 11
allele count: 1
allele frequency: 8.298204268596276e-6
allele num: 120508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1185T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.640T>C
  hgvsp: ENSP00000431536.1:p.Tyr214His
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.325T>C
  hgvsp: ENSP00000433016.1:p.Tyr109His
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.371T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.325T>C
  hgvsp: ENSP00000433231.1:p.Tyr109His
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.325T>C
  hgvsp: ENSP00000312134.5:p.Tyr109His
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28721
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7960
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr214His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-57156526-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156526
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156526
    reference: chr 11
allele count: 5
allele frequency: 4.14236479321315e-5
allele num: 120704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.323G>T
  hgvsp: ENSP00000433231.1:p.Arg108Leu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1183G>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.638G>T
  hgvsp: ENSP00000431536.1:p.Arg213Leu
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.323G>T
  hgvsp: ENSP00000312134.5:p.Arg108Leu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.323G>T
  hgvsp: ENSP00000433016.1:p.Arg108Leu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.369G>T
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg213Leu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

11-57156526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156526
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156526
    reference: chr 11
allele count: 14
allele frequency: 1.159862142099682e-4
allele num: 120704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.323G>A
  hgvsp: ENSP00000433231.1:p.Arg108His
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.323G>A
  hgvsp: ENSP00000312134.5:p.Arg108His
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.638G>A
  hgvsp: ENSP00000431536.1:p.Arg213His
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.323G>A
  hgvsp: ENSP00000433016.1:p.Arg108His
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.369G>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1183G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7965
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3985
  bin: 9.75e1
  variant carriers: 14
hgvs: p.Arg213His
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

11-57156527-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156527
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156527
    reference: chr 11
allele count: 6
allele frequency: 4.95458298926507e-5
allele num: 121100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.322C>T
  hgvsp: ENSP00000433016.1:p.Arg108Cys
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.322C>T
  hgvsp: ENSP00000433231.1:p.Arg108Cys
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1182C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.368C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.322C>T
  hgvsp: ENSP00000312134.5:p.Arg108Cys
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.637C>T
  hgvsp: ENSP00000431536.1:p.Arg213Cys
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40657
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg213Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

11-57156532-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156532
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156532
    reference: chr 11
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.317C>G
  hgvsp: ENSP00000312134.5:p.Thr106Ser
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.632C>G
  hgvsp: ENSP00000431536.1:p.Thr211Ser
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.317C>G
  hgvsp: ENSP00000433231.1:p.Thr106Ser
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.317C>G
  hgvsp: ENSP00000433016.1:p.Thr106Ser
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.363C>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1177C>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3949
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr211Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

11-57156533-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156533
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156533
    reference: chr 11
allele count: 476
allele frequency: 4.108335778771297e-3
allele num: 115862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.316A>C
  hgvsp: ENSP00000433231.1:p.Thr106Pro
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1176A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.316A>C
  hgvsp: ENSP00000433016.1:p.Thr106Pro
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.631A>C
  hgvsp: ENSP00000431536.1:p.Thr211Pro
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.362A>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.316A>C
  hgvsp: ENSP00000312134.5:p.Thr106Pro
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 3.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 14212
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28756
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 10092
  bin: 3.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 8.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 9.75e1
  variant carriers: 267
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 7756
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 9
hgvs: p.Thr211Pro
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

11-57156534-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156534
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156534
    reference: chr 11
allele count: 2
allele frequency: 1.650546330835507e-5
allele num: 121172
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.315G>C
  hgvsp: ENSP00000312134.5:p.Gln105His
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.361G>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.315G>C
  hgvsp: ENSP00000433016.1:p.Gln105His
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.315G>C
  hgvsp: ENSP00000433231.1:p.Gln105His
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1175G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.630G>C
  hgvsp: ENSP00000431536.1:p.Gln210His
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41843
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Gln210His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

11-57156541-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156541
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156541
    reference: chr 11
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.308G>A
  hgvsp: ENSP00000312134.5:p.Gly103Glu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1168G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.308G>A
  hgvsp: ENSP00000433231.1:p.Gly103Glu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.623G>A
  hgvsp: ENSP00000431536.1:p.Gly208Glu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.308G>A
  hgvsp: ENSP00000433016.1:p.Gly103Glu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.354G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8468
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly208Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

11-57156548-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156548
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156548
    reference: chr 11
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.301A>T
  hgvsp: ENSP00000433231.1:p.Ile101Phe
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.301A>T
  hgvsp: ENSP00000312134.5:p.Ile101Phe
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1161A>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.301A>T
  hgvsp: ENSP00000433016.1:p.Ile101Phe
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.347A>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.616A>T
  hgvsp: ENSP00000431536.1:p.Ile206Phe
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42279
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile206Phe
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

11-57156551-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156551
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156551
    reference: chr 11
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.298G>C
  hgvsp: ENSP00000312134.5:p.Gly100Arg
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.298G>C
  hgvsp: ENSP00000433231.1:p.Gly100Arg
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.344G>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.613G>C
  hgvsp: ENSP00000431536.1:p.Gly205Arg
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1158G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.298G>C
  hgvsp: ENSP00000433016.1:p.Gly100Arg
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8496
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly205Arg
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

11-57156554-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156554
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156554
    reference: chr 11
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.295G>C
  hgvsp: ENSP00000312134.5:p.Val99Leu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.295G>C
  hgvsp: ENSP00000433231.1:p.Val99Leu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.341G>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.295G>C
  hgvsp: ENSP00000433016.1:p.Val99Leu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.610G>C
  hgvsp: ENSP00000431536.1:p.Val204Leu
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1155G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val204Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

11-57156555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156555
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156555
    reference: chr 11
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.294G>A
  hgvsp: ENST00000533605.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1154G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.294G>A
  hgvsp: ENST00000311862.5:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.294G>A
  hgvsp: ENST00000525955.1:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.609G>A
  hgvsp: ENST00000529411.1:c.609G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.340G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42315
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val203Val
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

11-57156563-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156563
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156563
    reference: chr 11
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.286G>C
  hgvsp: ENSP00000312134.5:p.Val96Leu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1146G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.286G>C
  hgvsp: ENSP00000433016.1:p.Val96Leu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.601G>C
  hgvsp: ENSP00000431536.1:p.Val201Leu
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.332G>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.286G>C
  hgvsp: ENSP00000433231.1:p.Val96Leu
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val201Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

11-57156566-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156566
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156566
    reference: chr 11
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1143A>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.598A>C
  hgvsp: ENSP00000431536.1:p.Thr200Pro
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.283A>C
  hgvsp: ENSP00000312134.5:p.Thr95Pro
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.283A>C
  hgvsp: ENSP00000433016.1:p.Thr95Pro
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.283A>C
  hgvsp: ENSP00000433231.1:p.Thr95Pro
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.329A>C
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Thr200Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

11-57156575-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156575
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156575
    reference: chr 11
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.274G>A
  hgvsp: ENSP00000433231.1:p.Glu92Lys
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.589G>A
  hgvsp: ENSP00000431536.1:p.Glu197Lys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.274G>A
  hgvsp: ENSP00000433016.1:p.Glu92Lys
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1134G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.274G>A
  hgvsp: ENSP00000312134.5:p.Glu92Lys
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.320G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu197Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-57156585-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156585
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156585
    reference: chr 11
allele count: 122
allele frequency: 1.004859566757269e-3
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.579G>A
  hgvsp: ENST00000529411.1:c.579G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.264G>A
  hgvsp: ENST00000533605.1:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.264G>A
  hgvsp: ENST00000525955.1:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1124G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.264G>A
  hgvsp: ENST00000311862.5:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.310G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr193Thr
num of homozygotes: 2
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

11-57156586-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156586
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156586
    reference: chr 11
allele count: 9
allele frequency: 7.412898443291327e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.578C>T
  hgvsp: ENSP00000431536.1:p.Thr193Met
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.309C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1123C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.263C>T
  hgvsp: ENSP00000312134.5:p.Thr88Met
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.263C>T
  hgvsp: ENSP00000433231.1:p.Thr88Met
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.263C>T
  hgvsp: ENSP00000433016.1:p.Thr88Met
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2446
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8519
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr193Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

11-57156589-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156589
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156589
    reference: chr 11
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.260T>C
  hgvsp: ENSP00000433016.1:p.Leu87Pro
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.260T>C
  hgvsp: ENSP00000312134.5:p.Leu87Pro
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1120T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.575T>C
  hgvsp: ENSP00000431536.1:p.Leu192Pro
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.306T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.260T>C
  hgvsp: ENSP00000433231.1:p.Leu87Pro
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8520
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu192Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

11-57156590-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156590
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156590
    reference: chr 11
allele count: 10
allele frequency: 8.236553825879252e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.259C>G
  hgvsp: ENSP00000312134.5:p.Leu87Val
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.259C>G
  hgvsp: ENSP00000433231.1:p.Leu87Val
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.574C>G
  hgvsp: ENSP00000431536.1:p.Leu192Val
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.259C>G
  hgvsp: ENSP00000433016.1:p.Leu87Val
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.305C>G
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1119C>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu192Val
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-57156606-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156606
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156606
    reference: chr 11
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1103T>C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.558T>C
  hgvsp: ENST00000529411.1:c.558T>C(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.243T>C
  hgvsp: ENST00000311862.5:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.289T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.243T>C
  hgvsp: ENST00000525955.1:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.243T>C
  hgvsp: ENST00000533605.1:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp186Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

11-57156606-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156606
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156606
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.243T>A
  hgvsp: ENSP00000433231.1:p.Asp81Glu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.289T>A
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1103T>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.243T>A
  hgvsp: ENSP00000312134.5:p.Asp81Glu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.243T>A
  hgvsp: ENSP00000433016.1:p.Asp81Glu
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.558T>A
  hgvsp: ENSP00000431536.1:p.Asp186Glu
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp186Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

11-57156617-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156617
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156617
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.232T>C
  hgvsp: ENSP00000433016.1:p.Ser78Pro
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1092T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.232T>C
  hgvsp: ENSP00000433231.1:p.Ser78Pro
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.547T>C
  hgvsp: ENSP00000431536.1:p.Ser183Pro
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.232T>C
  hgvsp: ENSP00000312134.5:p.Ser78Pro
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.278T>C
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8522
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser183Pro
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

11-57156619-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156619
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156619
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.230T>C
  hgvsp: ENSP00000433016.1:p.Ile77Thr
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.545T>C
  hgvsp: ENSP00000431536.1:p.Ile182Thr
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.230T>C
  hgvsp: ENSP00000312134.5:p.Ile77Thr
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.276T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.230T>C
  hgvsp: ENSP00000433231.1:p.Ile77Thr
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1090T>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8522
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile182Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-57156636-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156636
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156636
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431480
  ensembl transcript: ENST00000528835
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000528835.1:c.*437T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.213T>C
  hgvsp: ENST00000533605.1:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.528T>C
  hgvsp: ENST00000529411.1:c.528T>C(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.213T>C
  hgvsp: ENST00000311862.5:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.259T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1073T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.213T>C
  hgvsp: ENST00000525955.1:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8522
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp176Asp
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

11-57156642-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156642
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156642
    reference: chr 11
allele count: 245
allele frequency: 2.017922445886733e-3
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.207G>A
  hgvsp: ENST00000311862.5:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431480
  ensembl transcript: ENST00000528835
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000528835.1:c.*431G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1067G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.207G>A
  hgvsp: ENST00000533605.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.207G>A
  hgvsp: ENST00000525955.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.522G>A
  hgvsp: ENST00000529411.1:c.522G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.253G>A
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42422
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys174Lys
num of homozygotes: 2
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

11-57156649-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156649
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156649
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.200C>T
  hgvsp: ENSP00000433231.1:p.Ala67Val
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.200C>T
  hgvsp: ENSP00000433016.1:p.Ala67Val
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.246C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.515C>T
  hgvsp: ENSP00000431536.1:p.Ala172Val
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.200C>T
  hgvsp: ENSP00000312134.5:p.Ala67Val
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431480
  ensembl transcript: ENST00000528835
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000528835.1:c.*424C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1060C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala172Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-57156651-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156651
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156651
    reference: chr 11
allele count: 6
allele frequency: 4.941850887885876e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.244T>C
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.198T>C
  hgvsp: ENST00000311862.5:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.513T>C
  hgvsp: ENST00000529411.1:c.513T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.198T>C
  hgvsp: ENST00000525955.1:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1058T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431480
  ensembl transcript: ENST00000528835
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000528835.1:c.*422T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.198T>C
  hgvsp: ENST00000533605.1:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp171Asp
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

11-57156654-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57156654
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57156654
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.510A>T
  hgvsp: ENSP00000431536.1:p.Glu170Asp
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.241A>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.195A>T
  hgvsp: ENSP00000433231.1:p.Glu65Asp
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.195A>T
  hgvsp: ENSP00000433016.1:p.Glu65Asp
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.195A>T
  hgvsp: ENSP00000312134.5:p.Glu65Asp
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.1055A>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431480
  ensembl transcript: ENST00000528835
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000528835.1:c.*419A>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu170Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-57157406-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57157406
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57157406
    reference: chr 11
allele count: 1
allele frequency: 8.316838270762986e-6
allele num: 120238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431480
  ensembl transcript: ENST00000528835
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000528835.1:c.*236C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254979
  ensembl transcript: ENST00000534081
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000534081.1:n.872C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254979
  ensembl protein: ENSP00000431536
  ensembl transcript: ENST00000529411
  gene symbol: RP11-872D17.8
  hgvsc: ENST00000529411.1:c.327C>T
  hgvsp: ENST00000529411.1:c.327C>T(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000312134
  ensembl transcript: ENST00000311862
  gene symbol: PRG2
  hgvsc: ENST00000311862.5:c.12C>T
  hgvsp: ENST00000311862.5:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433231
  ensembl transcript: ENST00000533605
  gene symbol: PRG2
  hgvsc: ENST00000533605.1:c.12C>T
  hgvsp: ENST00000533605.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186652
  ensembl transcript: ENST00000530105
  gene symbol: PRG2
  hgvsc: ENST00000530105.1:n.58C>T
  variant of: http://identifiers.org/hgnc/9362
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186652
  ensembl protein: ENSP00000433016
  ensembl transcript: ENST00000525955
  gene symbol: PRG2
  hgvsc: ENST00000525955.1:c.12C>T
  hgvsp: ENST00000525955.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9362
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46630
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4214
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro109Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

8-141669595-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141669595
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 141669595
    reference: chr 8
allele count: 1
allele frequency: 8.356313194618534e-6
allele num: 119670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430916
  ensembl transcript: ENST00000517712
  gene symbol: PTK2
  hgvsc: ENST00000517712.1:c.318G>A
  hgvsp: ENST00000517712.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429929
  ensembl transcript: ENST00000519654
  gene symbol: PTK2
  hgvsc: ENST00000519654.1:c.3022G>A
  hgvsp: ENST00000519654.1:c.3022G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430828
  ensembl transcript: ENST00000523435
  gene symbol: PTK2
  hgvsc: ENST00000523435.1:c.351G>A
  hgvsp: ENST00000523435.1:c.351G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428570
  ensembl transcript: ENST00000519993
  gene symbol: PTK2
  hgvsc: ENST00000519993.1:c.*2809G>A
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429170
  ensembl transcript: ENST00000519465
  gene symbol: PTK2
  hgvsc: ENST00000519465.1:c.2013G>A
  hgvsp: ENST00000519465.1:c.2013G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000445742
  ensembl transcript: ENST00000538769
  gene symbol: PTK2
  hgvsc: ENST00000538769.1:c.2133G>A
  hgvsp: ENST00000538769.1:c.2133G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429082
  ensembl transcript: ENST00000517887
  gene symbol: PTK2
  hgvsc: ENST00000517887.1:c.3261G>A
  hgvsp: ENST00000517887.1:c.3261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429129
  ensembl transcript: ENST00000519419
  gene symbol: PTK2
  hgvsc: ENST00000519419.1:c.3261G>A
  hgvsp: ENST00000519419.1:c.3261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429911
  ensembl transcript: ENST00000522684
  gene symbol: PTK2
  hgvsc: ENST00000522684.1:c.3129G>A
  hgvsp: ENST00000522684.1:c.3129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000341189
  ensembl transcript: ENST00000340930
  gene symbol: PTK2
  hgvsc: ENST00000340930.3:c.3168G>A
  hgvsp: ENST00000340930.3:c.3168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000403416
  ensembl transcript: ENST00000430260
  gene symbol: PTK2
  hgvsc: ENST00000430260.2:c.1059G>A
  hgvsp: ENST00000430260.2:c.1059G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430603
  ensembl transcript: ENST00000521986
  gene symbol: PTK2
  hgvsc: ENST00000521986.1:c.2232G>A
  hgvsp: ENST00000521986.1:c.2232G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428492
  ensembl transcript: ENST00000523539
  gene symbol: PTK2
  hgvsc: ENST00000523539.1:c.2145G>A
  hgvsp: ENST00000523539.1:c.2145G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000378644
  ensembl transcript: ENST00000395218
  gene symbol: PTK2
  hgvsc: ENST00000395218.2:c.3168G>A
  hgvsp: ENST00000395218.2:c.3168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429474
  ensembl transcript: ENST00000521059
  gene symbol: PTK2
  hgvsc: ENST00000521059.1:c.3129G>A
  hgvsp: ENST00000521059.1:c.3129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000438009
  ensembl transcript: ENST00000535192
  gene symbol: PTK2
  hgvsc: ENST00000535192.1:c.2991G>A
  hgvsp: ENST00000535192.1:c.2991G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429023
  ensembl transcript: ENST00000524202
  gene symbol: PTK2
  hgvsc: ENST00000524202.1:c.*1630G>A
  variant of: http://identifiers.org/hgnc/9611
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1056Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/8-141669596-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141669596
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 141669596
    reference: chr 8
allele count: 2
allele frequency: 1.670118244371702e-5
allele num: 119752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429170
  ensembl transcript: ENST00000519465
  gene symbol: PTK2
  hgvsc: ENST00000519465.1:c.2012T>G
  hgvsp: ENSP00000429170.1:p.Leu671Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429929
  ensembl transcript: ENST00000519654
  gene symbol: PTK2
  hgvsc: ENST00000519654.1:c.3021T>G
  hgvsp: ENSP00000429929.1:p.Leu1008Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000403416
  ensembl transcript: ENST00000430260
  gene symbol: PTK2
  hgvsc: ENST00000430260.2:c.1058T>G
  hgvsp: ENSP00000403416.2:p.Leu353Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000341189
  ensembl transcript: ENST00000340930
  gene symbol: PTK2
  hgvsc: ENST00000340930.3:c.3167T>G
  hgvsp: ENSP00000341189.3:p.Leu1056Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428492
  ensembl transcript: ENST00000523539
  gene symbol: PTK2
  hgvsc: ENST00000523539.1:c.2144T>G
  hgvsp: ENSP00000428492.1:p.Leu715Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429911
  ensembl transcript: ENST00000522684
  gene symbol: PTK2
  hgvsc: ENST00000522684.1:c.3128T>G
  hgvsp: ENSP00000429911.1:p.Leu1043Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000445742
  ensembl transcript: ENST00000538769
  gene symbol: PTK2
  hgvsc: ENST00000538769.1:c.2132T>G
  hgvsp: ENSP00000445742.1:p.Leu711Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429129
  ensembl transcript: ENST00000519419
  gene symbol: PTK2
  hgvsc: ENST00000519419.1:c.3260T>G
  hgvsp: ENSP00000429129.1:p.Leu1087Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430916
  ensembl transcript: ENST00000517712
  gene symbol: PTK2
  hgvsc: ENST00000517712.1:c.317T>G
  hgvsp: ENSP00000430916.1:p.Leu106Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429082
  ensembl transcript: ENST00000517887
  gene symbol: PTK2
  hgvsc: ENST00000517887.1:c.3260T>G
  hgvsp: ENSP00000429082.1:p.Leu1087Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428570
  ensembl transcript: ENST00000519993
  gene symbol: PTK2
  hgvsc: ENST00000519993.1:c.*2808T>G
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429023
  ensembl transcript: ENST00000524202
  gene symbol: PTK2
  hgvsc: ENST00000524202.1:c.*1629T>G
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430828
  ensembl transcript: ENST00000523435
  gene symbol: PTK2
  hgvsc: ENST00000523435.1:c.350T>G
  hgvsp: ENSP00000430828.1:p.Leu117Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429474
  ensembl transcript: ENST00000521059
  gene symbol: PTK2
  hgvsc: ENST00000521059.1:c.3128T>G
  hgvsp: ENSP00000429474.1:p.Leu1043Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000438009
  ensembl transcript: ENST00000535192
  gene symbol: PTK2
  hgvsc: ENST00000535192.1:c.2990T>G
  hgvsp: ENSP00000438009.1:p.Leu997Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430603
  ensembl transcript: ENST00000521986
  gene symbol: PTK2
  hgvsc: ENST00000521986.1:c.2231T>G
  hgvsp: ENSP00000430603.1:p.Leu744Arg
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000378644
  ensembl transcript: ENST00000395218
  gene symbol: PTK2
  hgvsc: ENST00000395218.2:c.3167T>G
  hgvsp: ENSP00000378644.2:p.Leu1056Arg
  variant of: http://identifiers.org/hgnc/9611
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1056Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/8-141669609-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141669609
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 141669609
    reference: chr 8
allele count: 1
allele frequency: 8.284592315212168e-6
allele num: 120706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000403416
  ensembl transcript: ENST00000430260
  gene symbol: PTK2
  hgvsc: ENST00000430260.2:c.1045G>T
  hgvsp: ENSP00000403416.2:p.Asp349Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000341189
  ensembl transcript: ENST00000340930
  gene symbol: PTK2
  hgvsc: ENST00000340930.3:c.3154G>T
  hgvsp: ENSP00000341189.3:p.Asp1052Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429129
  ensembl transcript: ENST00000519419
  gene symbol: PTK2
  hgvsc: ENST00000519419.1:c.3247G>T
  hgvsp: ENSP00000429129.1:p.Asp1083Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429170
  ensembl transcript: ENST00000519465
  gene symbol: PTK2
  hgvsc: ENST00000519465.1:c.1999G>T
  hgvsp: ENSP00000429170.1:p.Asp667Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429082
  ensembl transcript: ENST00000517887
  gene symbol: PTK2
  hgvsc: ENST00000517887.1:c.3247G>T
  hgvsp: ENSP00000429082.1:p.Asp1083Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000438009
  ensembl transcript: ENST00000535192
  gene symbol: PTK2
  hgvsc: ENST00000535192.1:c.2977G>T
  hgvsp: ENSP00000438009.1:p.Asp993Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000378644
  ensembl transcript: ENST00000395218
  gene symbol: PTK2
  hgvsc: ENST00000395218.2:c.3154G>T
  hgvsp: ENSP00000378644.2:p.Asp1052Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430828
  ensembl transcript: ENST00000523435
  gene symbol: PTK2
  hgvsc: ENST00000523435.1:c.337G>T
  hgvsp: ENSP00000430828.1:p.Asp113Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428492
  ensembl transcript: ENST00000523539
  gene symbol: PTK2
  hgvsc: ENST00000523539.1:c.2131G>T
  hgvsp: ENSP00000428492.1:p.Asp711Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430603
  ensembl transcript: ENST00000521986
  gene symbol: PTK2
  hgvsc: ENST00000521986.1:c.2218G>T
  hgvsp: ENSP00000430603.1:p.Asp740Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429911
  ensembl transcript: ENST00000522684
  gene symbol: PTK2
  hgvsc: ENST00000522684.1:c.3115G>T
  hgvsp: ENSP00000429911.1:p.Asp1039Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429929
  ensembl transcript: ENST00000519654
  gene symbol: PTK2
  hgvsc: ENST00000519654.1:c.3008G>T
  hgvsp: ENSP00000429929.1:p.Asp1004Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429474
  ensembl transcript: ENST00000521059
  gene symbol: PTK2
  hgvsc: ENST00000521059.1:c.3115G>T
  hgvsp: ENSP00000429474.1:p.Asp1039Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000445742
  ensembl transcript: ENST00000538769
  gene symbol: PTK2
  hgvsc: ENST00000538769.1:c.2119G>T
  hgvsp: ENSP00000445742.1:p.Asp707Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428570
  ensembl transcript: ENST00000519993
  gene symbol: PTK2
  hgvsc: ENST00000519993.1:c.*2795G>T
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430916
  ensembl transcript: ENST00000517712
  gene symbol: PTK2
  hgvsc: ENST00000517712.1:c.304G>T
  hgvsp: ENSP00000430916.1:p.Asp102Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429023
  ensembl transcript: ENST00000524202
  gene symbol: PTK2
  hgvsc: ENST00000524202.1:c.*1616G>T
  variant of: http://identifiers.org/hgnc/9611
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1052Tyr
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-141669618-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141669618
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 141669618
    reference: chr 8
allele count: 1
allele frequency: 8.266512358435975e-6
allele num: 120970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000445742
  ensembl transcript: ENST00000538769
  gene symbol: PTK2
  hgvsc: ENST00000538769.1:c.2110G>T
  hgvsp: ENSP00000445742.1:p.Asp704Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000378644
  ensembl transcript: ENST00000395218
  gene symbol: PTK2
  hgvsc: ENST00000395218.2:c.3145G>T
  hgvsp: ENSP00000378644.2:p.Asp1049Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430828
  ensembl transcript: ENST00000523435
  gene symbol: PTK2
  hgvsc: ENST00000523435.1:c.328G>T
  hgvsp: ENSP00000430828.1:p.Asp110Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000403416
  ensembl transcript: ENST00000430260
  gene symbol: PTK2
  hgvsc: ENST00000430260.2:c.1036G>T
  hgvsp: ENSP00000403416.2:p.Asp346Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429474
  ensembl transcript: ENST00000521059
  gene symbol: PTK2
  hgvsc: ENST00000521059.1:c.3106G>T
  hgvsp: ENSP00000429474.1:p.Asp1036Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000438009
  ensembl transcript: ENST00000535192
  gene symbol: PTK2
  hgvsc: ENST00000535192.1:c.2968G>T
  hgvsp: ENSP00000438009.1:p.Asp990Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428570
  ensembl transcript: ENST00000519993
  gene symbol: PTK2
  hgvsc: ENST00000519993.1:c.*2786G>T
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000341189
  ensembl transcript: ENST00000340930
  gene symbol: PTK2
  hgvsc: ENST00000340930.3:c.3145G>T
  hgvsp: ENSP00000341189.3:p.Asp1049Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429929
  ensembl transcript: ENST00000519654
  gene symbol: PTK2
  hgvsc: ENST00000519654.1:c.2999G>T
  hgvsp: ENSP00000429929.1:p.Asp1001Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429023
  ensembl transcript: ENST00000524202
  gene symbol: PTK2
  hgvsc: ENST00000524202.1:c.*1607G>T
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430603
  ensembl transcript: ENST00000521986
  gene symbol: PTK2
  hgvsc: ENST00000521986.1:c.2209G>T
  hgvsp: ENSP00000430603.1:p.Asp737Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429082
  ensembl transcript: ENST00000517887
  gene symbol: PTK2
  hgvsc: ENST00000517887.1:c.3238G>T
  hgvsp: ENSP00000429082.1:p.Asp1080Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429170
  ensembl transcript: ENST00000519465
  gene symbol: PTK2
  hgvsc: ENST00000519465.1:c.1990G>T
  hgvsp: ENSP00000429170.1:p.Asp664Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428492
  ensembl transcript: ENST00000523539
  gene symbol: PTK2
  hgvsc: ENST00000523539.1:c.2122G>T
  hgvsp: ENSP00000428492.1:p.Asp708Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430916
  ensembl transcript: ENST00000517712
  gene symbol: PTK2
  hgvsc: ENST00000517712.1:c.295G>T
  hgvsp: ENSP00000430916.1:p.Asp99Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429129
  ensembl transcript: ENST00000519419
  gene symbol: PTK2
  hgvsc: ENST00000519419.1:c.3238G>T
  hgvsp: ENSP00000429129.1:p.Asp1080Tyr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429911
  ensembl transcript: ENST00000522684
  gene symbol: PTK2
  hgvsc: ENST00000522684.1:c.3106G>T
  hgvsp: ENSP00000429911.1:p.Asp1036Tyr
  variant of: http://identifiers.org/hgnc/9611
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10489
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1049Tyr
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

8-141669635-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141669635
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 141669635
    reference: chr 8
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000438009
  ensembl transcript: ENST00000535192
  gene symbol: PTK2
  hgvsc: ENST00000535192.1:c.2951A>G
  hgvsp: ENSP00000438009.1:p.Asp984Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429170
  ensembl transcript: ENST00000519465
  gene symbol: PTK2
  hgvsc: ENST00000519465.1:c.1973A>G
  hgvsp: ENSP00000429170.1:p.Asp658Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430603
  ensembl transcript: ENST00000521986
  gene symbol: PTK2
  hgvsc: ENST00000521986.1:c.2192A>G
  hgvsp: ENSP00000430603.1:p.Asp731Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429023
  ensembl transcript: ENST00000524202
  gene symbol: PTK2
  hgvsc: ENST00000524202.1:c.*1590A>G
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000341189
  ensembl transcript: ENST00000340930
  gene symbol: PTK2
  hgvsc: ENST00000340930.3:c.3128A>G
  hgvsp: ENSP00000341189.3:p.Asp1043Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429129
  ensembl transcript: ENST00000519419
  gene symbol: PTK2
  hgvsc: ENST00000519419.1:c.3221A>G
  hgvsp: ENSP00000429129.1:p.Asp1074Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428492
  ensembl transcript: ENST00000523539
  gene symbol: PTK2
  hgvsc: ENST00000523539.1:c.2105A>G
  hgvsp: ENSP00000428492.1:p.Asp702Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429929
  ensembl transcript: ENST00000519654
  gene symbol: PTK2
  hgvsc: ENST00000519654.1:c.2982A>G
  hgvsp: ENSP00000429929.1:p.Asp995Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000445742
  ensembl transcript: ENST00000538769
  gene symbol: PTK2
  hgvsc: ENST00000538769.1:c.2093A>G
  hgvsp: ENSP00000445742.1:p.Asp698Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000378644
  ensembl transcript: ENST00000395218
  gene symbol: PTK2
  hgvsc: ENST00000395218.2:c.3128A>G
  hgvsp: ENSP00000378644.2:p.Asp1043Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429082
  ensembl transcript: ENST00000517887
  gene symbol: PTK2
  hgvsc: ENST00000517887.1:c.3221A>G
  hgvsp: ENSP00000429082.1:p.Asp1074Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429474
  ensembl transcript: ENST00000521059
  gene symbol: PTK2
  hgvsc: ENST00000521059.1:c.3089A>G
  hgvsp: ENSP00000429474.1:p.Asp1030Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428570
  ensembl transcript: ENST00000519993
  gene symbol: PTK2
  hgvsc: ENST00000519993.1:c.*2769A>G
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000403416
  ensembl transcript: ENST00000430260
  gene symbol: PTK2
  hgvsc: ENST00000430260.2:c.1019A>G
  hgvsp: ENSP00000403416.2:p.Asp340Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429911
  ensembl transcript: ENST00000522684
  gene symbol: PTK2
  hgvsc: ENST00000522684.1:c.3089A>G
  hgvsp: ENSP00000429911.1:p.Asp1030Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430828
  ensembl transcript: ENST00000523435
  gene symbol: PTK2
  hgvsc: ENST00000523435.1:c.311A>G
  hgvsp: ENSP00000430828.1:p.Asp104Gly
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430916
  ensembl transcript: ENST00000517712
  gene symbol: PTK2
  hgvsc: ENST00000517712.1:c.278A>G
  hgvsp: ENSP00000430916.1:p.Asp93Gly
  variant of: http://identifiers.org/hgnc/9611
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1043Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

8-141669643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141669643
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 141669643
    reference: chr 8
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428570
  ensembl transcript: ENST00000519993
  gene symbol: PTK2
  hgvsc: ENST00000519993.1:c.*2761G>A
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000445742
  ensembl transcript: ENST00000538769
  gene symbol: PTK2
  hgvsc: ENST00000538769.1:c.2085G>A
  hgvsp: ENST00000538769.1:c.2085G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430603
  ensembl transcript: ENST00000521986
  gene symbol: PTK2
  hgvsc: ENST00000521986.1:c.2184G>A
  hgvsp: ENST00000521986.1:c.2184G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429082
  ensembl transcript: ENST00000517887
  gene symbol: PTK2
  hgvsc: ENST00000517887.1:c.3213G>A
  hgvsp: ENST00000517887.1:c.3213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000403416
  ensembl transcript: ENST00000430260
  gene symbol: PTK2
  hgvsc: ENST00000430260.2:c.1011G>A
  hgvsp: ENST00000430260.2:c.1011G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429474
  ensembl transcript: ENST00000521059
  gene symbol: PTK2
  hgvsc: ENST00000521059.1:c.3081G>A
  hgvsp: ENST00000521059.1:c.3081G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429170
  ensembl transcript: ENST00000519465
  gene symbol: PTK2
  hgvsc: ENST00000519465.1:c.1965G>A
  hgvsp: ENST00000519465.1:c.1965G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000438009
  ensembl transcript: ENST00000535192
  gene symbol: PTK2
  hgvsc: ENST00000535192.1:c.2943G>A
  hgvsp: ENST00000535192.1:c.2943G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000341189
  ensembl transcript: ENST00000340930
  gene symbol: PTK2
  hgvsc: ENST00000340930.3:c.3120G>A
  hgvsp: ENST00000340930.3:c.3120G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429929
  ensembl transcript: ENST00000519654
  gene symbol: PTK2
  hgvsc: ENST00000519654.1:c.2974G>A
  hgvsp: ENST00000519654.1:c.2974G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430916
  ensembl transcript: ENST00000517712
  gene symbol: PTK2
  hgvsc: ENST00000517712.1:c.270G>A
  hgvsp: ENST00000517712.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429129
  ensembl transcript: ENST00000519419
  gene symbol: PTK2
  hgvsc: ENST00000519419.1:c.3213G>A
  hgvsp: ENST00000519419.1:c.3213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429023
  ensembl transcript: ENST00000524202
  gene symbol: PTK2
  hgvsc: ENST00000524202.1:c.*1582G>A
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428492
  ensembl transcript: ENST00000523539
  gene symbol: PTK2
  hgvsc: ENST00000523539.1:c.2097G>A
  hgvsp: ENST00000523539.1:c.2097G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430828
  ensembl transcript: ENST00000523435
  gene symbol: PTK2
  hgvsc: ENST00000523435.1:c.303G>A
  hgvsp: ENST00000523435.1:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000378644
  ensembl transcript: ENST00000395218
  gene symbol: PTK2
  hgvsc: ENST00000395218.2:c.3120G>A
  hgvsp: ENST00000395218.2:c.3120G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429911
  ensembl transcript: ENST00000522684
  gene symbol: PTK2
  hgvsc: ENST00000522684.1:c.3081G>A
  hgvsp: ENST00000522684.1:c.3081G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1040Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

8-141669645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141669645
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 141669645
    reference: chr 8
allele count: 6
allele frequency: 4.945598417408506e-5
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000378644
  ensembl transcript: ENST00000395218
  gene symbol: PTK2
  hgvsc: ENST00000395218.2:c.3118C>T
  hgvsp: ENST00000395218.2:c.3118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430828
  ensembl transcript: ENST00000523435
  gene symbol: PTK2
  hgvsc: ENST00000523435.1:c.301C>T
  hgvsp: ENST00000523435.1:c.301C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429129
  ensembl transcript: ENST00000519419
  gene symbol: PTK2
  hgvsc: ENST00000519419.1:c.3211C>T
  hgvsp: ENST00000519419.1:c.3211C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430916
  ensembl transcript: ENST00000517712
  gene symbol: PTK2
  hgvsc: ENST00000517712.1:c.268C>T
  hgvsp: ENST00000517712.1:c.268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429082
  ensembl transcript: ENST00000517887
  gene symbol: PTK2
  hgvsc: ENST00000517887.1:c.3211C>T
  hgvsp: ENST00000517887.1:c.3211C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000438009
  ensembl transcript: ENST00000535192
  gene symbol: PTK2
  hgvsc: ENST00000535192.1:c.2941C>T
  hgvsp: ENST00000535192.1:c.2941C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429170
  ensembl transcript: ENST00000519465
  gene symbol: PTK2
  hgvsc: ENST00000519465.1:c.1963C>T
  hgvsp: ENST00000519465.1:c.1963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428492
  ensembl transcript: ENST00000523539
  gene symbol: PTK2
  hgvsc: ENST00000523539.1:c.2095C>T
  hgvsp: ENST00000523539.1:c.2095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000341189
  ensembl transcript: ENST00000340930
  gene symbol: PTK2
  hgvsc: ENST00000340930.3:c.3118C>T
  hgvsp: ENST00000340930.3:c.3118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000403416
  ensembl transcript: ENST00000430260
  gene symbol: PTK2
  hgvsc: ENST00000430260.2:c.1009C>T
  hgvsp: ENST00000430260.2:c.1009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429911
  ensembl transcript: ENST00000522684
  gene symbol: PTK2
  hgvsc: ENST00000522684.1:c.3079C>T
  hgvsp: ENST00000522684.1:c.3079C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430603
  ensembl transcript: ENST00000521986
  gene symbol: PTK2
  hgvsc: ENST00000521986.1:c.2182C>T
  hgvsp: ENST00000521986.1:c.2182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429474
  ensembl transcript: ENST00000521059
  gene symbol: PTK2
  hgvsc: ENST00000521059.1:c.3079C>T
  hgvsp: ENST00000521059.1:c.3079C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429023
  ensembl transcript: ENST00000524202
  gene symbol: PTK2
  hgvsc: ENST00000524202.1:c.*1580C>T
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428570
  ensembl transcript: ENST00000519993
  gene symbol: PTK2
  hgvsc: ENST00000519993.1:c.*2759C>T
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429929
  ensembl transcript: ENST00000519654
  gene symbol: PTK2
  hgvsc: ENST00000519654.1:c.2972C>T
  hgvsp: ENST00000519654.1:c.2972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000445742
  ensembl transcript: ENST00000538769
  gene symbol: PTK2
  hgvsc: ENST00000538769.1:c.2083C>T
  hgvsp: ENST00000538769.1:c.2083C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu1040Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-141669646-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141669646
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 141669646
    reference: chr 8
allele count: 2
allele frequency: 1.648478454386601e-5
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429170
  ensembl transcript: ENST00000519465
  gene symbol: PTK2
  hgvsc: ENST00000519465.1:c.1962C>T
  hgvsp: ENST00000519465.1:c.1962C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000403416
  ensembl transcript: ENST00000430260
  gene symbol: PTK2
  hgvsc: ENST00000430260.2:c.1008C>T
  hgvsp: ENST00000430260.2:c.1008C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430916
  ensembl transcript: ENST00000517712
  gene symbol: PTK2
  hgvsc: ENST00000517712.1:c.267C>T
  hgvsp: ENST00000517712.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429474
  ensembl transcript: ENST00000521059
  gene symbol: PTK2
  hgvsc: ENST00000521059.1:c.3078C>T
  hgvsp: ENST00000521059.1:c.3078C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000438009
  ensembl transcript: ENST00000535192
  gene symbol: PTK2
  hgvsc: ENST00000535192.1:c.2940C>T
  hgvsp: ENST00000535192.1:c.2940C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429929
  ensembl transcript: ENST00000519654
  gene symbol: PTK2
  hgvsc: ENST00000519654.1:c.2971C>T
  hgvsp: ENST00000519654.1:c.2971C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429082
  ensembl transcript: ENST00000517887
  gene symbol: PTK2
  hgvsc: ENST00000517887.1:c.3210C>T
  hgvsp: ENST00000517887.1:c.3210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430603
  ensembl transcript: ENST00000521986
  gene symbol: PTK2
  hgvsc: ENST00000521986.1:c.2181C>T
  hgvsp: ENST00000521986.1:c.2181C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429911
  ensembl transcript: ENST00000522684
  gene symbol: PTK2
  hgvsc: ENST00000522684.1:c.3078C>T
  hgvsp: ENST00000522684.1:c.3078C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000445742
  ensembl transcript: ENST00000538769
  gene symbol: PTK2
  hgvsc: ENST00000538769.1:c.2082C>T
  hgvsp: ENST00000538769.1:c.2082C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428492
  ensembl transcript: ENST00000523539
  gene symbol: PTK2
  hgvsc: ENST00000523539.1:c.2094C>T
  hgvsp: ENST00000523539.1:c.2094C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000378644
  ensembl transcript: ENST00000395218
  gene symbol: PTK2
  hgvsc: ENST00000395218.2:c.3117C>T
  hgvsp: ENST00000395218.2:c.3117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000341189
  ensembl transcript: ENST00000340930
  gene symbol: PTK2
  hgvsc: ENST00000340930.3:c.3117C>T
  hgvsp: ENST00000340930.3:c.3117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429129
  ensembl transcript: ENST00000519419
  gene symbol: PTK2
  hgvsc: ENST00000519419.1:c.3210C>T
  hgvsp: ENST00000519419.1:c.3210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430828
  ensembl transcript: ENST00000523435
  gene symbol: PTK2
  hgvsc: ENST00000523435.1:c.300C>T
  hgvsp: ENST00000523435.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429023
  ensembl transcript: ENST00000524202
  gene symbol: PTK2
  hgvsc: ENST00000524202.1:c.*1579C>T
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428570
  ensembl transcript: ENST00000519993
  gene symbol: PTK2
  hgvsc: ENST00000519993.1:c.*2758C>T
  variant of: http://identifiers.org/hgnc/9611
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10818
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1039Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

8-141669648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141669648
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 141669648
    reference: chr 8
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428492
  ensembl transcript: ENST00000523539
  gene symbol: PTK2
  hgvsc: ENST00000523539.1:c.2092G>A
  hgvsp: ENSP00000428492.1:p.Ala698Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000438009
  ensembl transcript: ENST00000535192
  gene symbol: PTK2
  hgvsc: ENST00000535192.1:c.2938G>A
  hgvsp: ENSP00000438009.1:p.Ala980Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000403416
  ensembl transcript: ENST00000430260
  gene symbol: PTK2
  hgvsc: ENST00000430260.2:c.1006G>A
  hgvsp: ENSP00000403416.2:p.Ala336Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000445742
  ensembl transcript: ENST00000538769
  gene symbol: PTK2
  hgvsc: ENST00000538769.1:c.2080G>A
  hgvsp: ENSP00000445742.1:p.Ala694Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000378644
  ensembl transcript: ENST00000395218
  gene symbol: PTK2
  hgvsc: ENST00000395218.2:c.3115G>A
  hgvsp: ENSP00000378644.2:p.Ala1039Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430916
  ensembl transcript: ENST00000517712
  gene symbol: PTK2
  hgvsc: ENST00000517712.1:c.265G>A
  hgvsp: ENSP00000430916.1:p.Ala89Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429474
  ensembl transcript: ENST00000521059
  gene symbol: PTK2
  hgvsc: ENST00000521059.1:c.3076G>A
  hgvsp: ENSP00000429474.1:p.Ala1026Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429911
  ensembl transcript: ENST00000522684
  gene symbol: PTK2
  hgvsc: ENST00000522684.1:c.3076G>A
  hgvsp: ENSP00000429911.1:p.Ala1026Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429929
  ensembl transcript: ENST00000519654
  gene symbol: PTK2
  hgvsc: ENST00000519654.1:c.2969G>A
  hgvsp: ENSP00000429929.1:p.Ala991Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000341189
  ensembl transcript: ENST00000340930
  gene symbol: PTK2
  hgvsc: ENST00000340930.3:c.3115G>A
  hgvsp: ENSP00000341189.3:p.Ala1039Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429129
  ensembl transcript: ENST00000519419
  gene symbol: PTK2
  hgvsc: ENST00000519419.1:c.3208G>A
  hgvsp: ENSP00000429129.1:p.Ala1070Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430603
  ensembl transcript: ENST00000521986
  gene symbol: PTK2
  hgvsc: ENST00000521986.1:c.2179G>A
  hgvsp: ENSP00000430603.1:p.Ala727Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429082
  ensembl transcript: ENST00000517887
  gene symbol: PTK2
  hgvsc: ENST00000517887.1:c.3208G>A
  hgvsp: ENSP00000429082.1:p.Ala1070Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428570
  ensembl transcript: ENST00000519993
  gene symbol: PTK2
  hgvsc: ENST00000519993.1:c.*2756G>A
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429023
  ensembl transcript: ENST00000524202
  gene symbol: PTK2
  hgvsc: ENST00000524202.1:c.*1577G>A
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430828
  ensembl transcript: ENST00000523435
  gene symbol: PTK2
  hgvsc: ENST00000523435.1:c.298G>A
  hgvsp: ENSP00000430828.1:p.Ala100Thr
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429170
  ensembl transcript: ENST00000519465
  gene symbol: PTK2
  hgvsc: ENST00000519465.1:c.1960G>A
  hgvsp: ENSP00000429170.1:p.Ala654Thr
  variant of: http://identifiers.org/hgnc/9611
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1039Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

8-141669649-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141669649
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 141669649
    reference: chr 8
allele count: 26
allele frequency: 2.142916014176214e-4
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429170
  ensembl transcript: ENST00000519465
  gene symbol: PTK2
  hgvsc: ENST00000519465.1:c.1959C>T
  hgvsp: ENST00000519465.1:c.1959C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000378644
  ensembl transcript: ENST00000395218
  gene symbol: PTK2
  hgvsc: ENST00000395218.2:c.3114C>T
  hgvsp: ENST00000395218.2:c.3114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428492
  ensembl transcript: ENST00000523539
  gene symbol: PTK2
  hgvsc: ENST00000523539.1:c.2091C>T
  hgvsp: ENST00000523539.1:c.2091C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430603
  ensembl transcript: ENST00000521986
  gene symbol: PTK2
  hgvsc: ENST00000521986.1:c.2178C>T
  hgvsp: ENST00000521986.1:c.2178C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430828
  ensembl transcript: ENST00000523435
  gene symbol: PTK2
  hgvsc: ENST00000523435.1:c.297C>T
  hgvsp: ENST00000523435.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429474
  ensembl transcript: ENST00000521059
  gene symbol: PTK2
  hgvsc: ENST00000521059.1:c.3075C>T
  hgvsp: ENST00000521059.1:c.3075C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429082
  ensembl transcript: ENST00000517887
  gene symbol: PTK2
  hgvsc: ENST00000517887.1:c.3207C>T
  hgvsp: ENST00000517887.1:c.3207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430916
  ensembl transcript: ENST00000517712
  gene symbol: PTK2
  hgvsc: ENST00000517712.1:c.264C>T
  hgvsp: ENST00000517712.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000428570
  ensembl transcript: ENST00000519993
  gene symbol: PTK2
  hgvsc: ENST00000519993.1:c.*2755C>T
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429023
  ensembl transcript: ENST00000524202
  gene symbol: PTK2
  hgvsc: ENST00000524202.1:c.*1576C>T
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000438009
  ensembl transcript: ENST00000535192
  gene symbol: PTK2
  hgvsc: ENST00000535192.1:c.2937C>T
  hgvsp: ENST00000535192.1:c.2937C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000341189
  ensembl transcript: ENST00000340930
  gene symbol: PTK2
  hgvsc: ENST00000340930.3:c.3114C>T
  hgvsp: ENST00000340930.3:c.3114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429929
  ensembl transcript: ENST00000519654
  gene symbol: PTK2
  hgvsc: ENST00000519654.1:c.2968C>T
  hgvsp: ENST00000519654.1:c.2968C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000403416
  ensembl transcript: ENST00000430260
  gene symbol: PTK2
  hgvsc: ENST00000430260.2:c.1005C>T
  hgvsp: ENST00000430260.2:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429129
  ensembl transcript: ENST00000519419
  gene symbol: PTK2
  hgvsc: ENST00000519419.1:c.3207C>T
  hgvsp: ENST00000519419.1:c.3207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429911
  ensembl transcript: ENST00000522684
  gene symbol: PTK2
  hgvsc: ENST00000522684.1:c.3075C>T
  hgvsp: ENST00000522684.1:c.3075C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000445742
  ensembl transcript: ENST00000538769
  gene symbol: PTK2
  hgvsc: ENST00000538769.1:c.2079C>T
  hgvsp: ENST00000538769.1:c.2079C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His1038His
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-141669682-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 141669682
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 141669682
    reference: chr 8
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429170
  ensembl transcript: ENST00000519465
  gene symbol: PTK2
  hgvsc: ENST00000519465.1:c.1926A>G
  hgvsp: ENST00000519465.1:c.1926A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000429129
  ensembl transcript: ENST00000519419
  gene symbol: PTK2
  hgvsc: ENST00000519419.1:c.3174A>G
  hgvsp: ENST00000519419.1:c.3174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169398
  ensembl protein: ENSP00000430828
  ensembl transcript: ENST00000523435
  gene symbol: PTK2
  hgvsc: ENST00000523435.1:c.264A>G
  hgvsp: ENST00000523435.1:c.264A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9611
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Gln1027Gln
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 3825
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5191
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7999
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1713
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509479531457553e-5
allele num: 66248
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.998923e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.674e0

QD
type: SiteQuality
SIO_000300: 1.287e1

FS
type: SiteQuality
SIO_000300: 9.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

GenotypeQuality
all individuals: 9175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5117
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3804
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515748628247491e-5
allele num: 65974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.821253191907288e-5
allele num: 10182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

DP
type: SiteQuality
SIO_000300: 1.970448e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.46e-1

QD
type: SiteQuality
SIO_000300: 1.433e1

GenotypeQuality
all individuals: 7977
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3448
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.136475208640157e-5
allele num: 16296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.57e0

FS
type: SiteQuality
SIO_000300: 1.427e0

VQSLOD
type: SiteQuality
SIO_000300: -6.999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

QD
type: SiteQuality
SIO_000300: 1.038e1

MQRankSum
type: SiteQuality
SIO_000300: -1.762e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

DP
type: SiteQuality
SIO_000300: 1.961207e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1700
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21103
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.036560184622859e-5
allele num: 65864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.87e-1

DP
type: SiteQuality
SIO_000300: 1.94108e6

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.53e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.892e0

GenotypeQuality
all individuals: 1484
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2465
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8245
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.048315805517451e-5
allele num: 65610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.747030048916841e-4
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.551e0

QD
type: SiteQuality
SIO_000300: 1.269e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.867874e6

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.29e-1

GenotypeQuality
all individuals: 2947
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4026
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178967224711153e-4
allele num: 8482
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.305e0

DP
type: SiteQuality
SIO_000300: 1.814298e6

MQ
type: SiteQuality
SIO_000300: 5.881e1

FS
type: SiteQuality
SIO_000300: 5.316e0

QD
type: SiteQuality
SIO_000300: 1.606e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

GenotypeQuality
all individuals: 2511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7925
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1650
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536098310291859e-5
allele num: 65100
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

DP
type: SiteQuality
SIO_000300: 1.800109e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.744e0

MQ
type: SiteQuality
SIO_000300: 5.876e1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

QD
type: SiteQuality
SIO_000300: 1.366e1

GenotypeQuality
all individuals: 491
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.228395253962816e-5
allele num: 64222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.791e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

QD
type: SiteQuality
SIO_000300: 1.756e1

DP
type: SiteQuality
SIO_000300: 2.123688e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
all individuals: 2057
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23818
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556517137253681e-5
allele num: 64246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.766e0

DP
type: SiteQuality
SIO_000300: 2.12664e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.027e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

MQ
type: SiteQuality
SIO_000300: 5.85e1

QD
type: SiteQuality
SIO_000300: 1.098e1

GenotypeQuality
all individuals: 851
bin: 8.25e1
variant carriers: 331

GenotypeQuality
all individuals: 1184
bin: 7.75e1
variant carriers: 300

GenotypeQuality
all individuals: 566
bin: 2.75e1
variant carriers: 119

GenotypeQuality
all individuals: 1348
bin: 2.25e1
variant carriers: 209

GenotypeQuality
all individuals: 587
bin: 3.75e1
variant carriers: 198

East Asian
type: Population
allele count: 2146
allele frequency: 2.522924994121796e-1
allele num: 8506
num of homozygotes: 278

Other
type: Population
allele count: 317
allele frequency: 3.810096153846154e-1
allele num: 832
num of homozygotes: 61

South Asian
type: Population
allele count: 3775
allele frequency: 3.035053867181219e-1
allele num: 12438
num of homozygotes: 591

European (Non-Finnish)
type: Population
allele count: 29387
allele frequency: 4.559941656580703e-1
allele num: 64446
num of homozygotes: 6684

African
type: Population
allele count: 2855
allele frequency: 2.829534192269574e-1
allele num: 10090
num of homozygotes: 380

European (Finnish)
type: Population
allele count: 2671
allele frequency: 4.060504712678626e-1
allele num: 6578
num of homozygotes: 502

Latino
type: Population
allele count: 2007
allele frequency: 1.75130890052356e-1
allele num: 11460
num of homozygotes: 208

DP
type: SiteQuality
SIO_000300: 2.285605e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.042e0

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.28e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.9e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

QD
type: SiteQuality
SIO_000300: 1.877e1

GenotypeQuality
all individuals: 468
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.580278128950695e-4
allele num: 12656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.636785162287481e-5
allele num: 64700
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.49e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.915e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

DP
type: SiteQuality
SIO_000300: 1.680463e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

FS
type: SiteQuality
SIO_000300: 7.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

GenotypeQuality
all individuals: 891
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545833977430824e-5
allele num: 64690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12624
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.824790307548928e-4
allele num: 8584
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

FS
type: SiteQuality
SIO_000300: 2.408e0

QD
type: SiteQuality
SIO_000300: 1.429e1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.682393e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.085e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
all individuals: 640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4058
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 506
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.757951900698215e-5
allele num: 12890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541734759951898e-5
allele num: 64862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.685294e6

FS
type: SiteQuality
SIO_000300: 1.657e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.524e-1

QD
type: SiteQuality
SIO_000300: 1.826e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 297
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4050
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 627
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64822
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

FS
type: SiteQuality
SIO_000300: 4.584e0

QD
type: SiteQuality
SIO_000300: 1.904e1

MQRankSum
type: SiteQuality
SIO_000300: 9.28e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.354e0

VQSLOD
type: SiteQuality
SIO_000300: -1.405e0

DP
type: SiteQuality
SIO_000300: 1.687621e6

GenotypeQuality
all individuals: 508
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4051
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7597
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12964
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.871e0

QD
type: SiteQuality
SIO_000300: 1.094e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.41e-1

FS
type: SiteQuality
SIO_000300: 3.365e0

MQRankSum
type: SiteQuality
SIO_000300: -6.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.44e-1

DP
type: SiteQuality
SIO_000300: 1.688067e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

GenotypeQuality
all individuals: 1148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7597
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.489e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 1.1624e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

DP
type: SiteQuality
SIO_000300: 1.689298e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: -2.84e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

GenotypeQuality
all individuals: 2231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4052
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35806
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7597
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13052
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

FS
type: SiteQuality
SIO_000300: 1.1624e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

VQSLOD
type: SiteQuality
SIO_000300: -2.84e-2

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.689298e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.489e0

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.693404e6

MQ
type: SiteQuality
SIO_000300: 5.811e1

FS
type: SiteQuality
SIO_000300: 6.925e0

QD
type: SiteQuality
SIO_000300: 3.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.347e0

VQSLOD
type: SiteQuality
SIO_000300: -3.081e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

GenotypeQuality
all individuals: 627
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4041
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 247
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65058
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.116e1

DP
type: SiteQuality
SIO_000300: 1.694448e6

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.669e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 1.741e0

GenotypeQuality
all individuals: 161
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37884
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4040
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.784735812133073e-5
allele num: 10220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

QD
type: SiteQuality
SIO_000300: 1.356e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.55e0

DP
type: SiteQuality
SIO_000300: 1.719822e6

FS
type: SiteQuality
SIO_000300: 1.746e0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526670941345302e-5
allele num: 65502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

QD
type: SiteQuality
SIO_000300: 1.356e1

FS
type: SiteQuality
SIO_000300: 1.746e0

DP
type: SiteQuality
SIO_000300: 1.719822e6

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 520
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.955070246209486e-5
allele num: 14378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65524
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

DP
type: SiteQuality
SIO_000300: 1.721595e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.612e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
all individuals: 4035
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38804
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
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GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.669334400426837e-5
allele num: 14994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65772
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.229e0

QD
type: SiteQuality
SIO_000300: 1.298e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.085e0

DP
type: SiteQuality
SIO_000300: 1.734393e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.713e0

GenotypeQuality
all individuals: 521
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38804
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520403819254394e-5
allele num: 65772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14994
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.229e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.713e0

DP
type: SiteQuality
SIO_000300: 1.734393e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.085e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4034
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.636580833554553e-5
allele num: 15068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519803033526855e-5
allele num: 65798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 5.22e0

DP
type: SiteQuality
SIO_000300: 1.735988e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.177e1

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1314
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8000
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.056603773584906e-4
allele num: 66250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.001251564455569e-3
allele num: 15980
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.51e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.21e0

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.366e0

QD
type: SiteQuality
SIO_000300: 1.35e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

DP
type: SiteQuality
SIO_000300: 1.758198e6

GenotypeQuality
all individuals: 133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40454
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8045
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.52420449404313e-5
allele num: 66310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.314279102059708e-4
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

DP
type: SiteQuality
SIO_000300: 1.759835e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4022
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 105
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506069459923492e-5
allele num: 66398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.165988407941794e-5
allele num: 16218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.763259e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 1.894e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.743e0

QD
type: SiteQuality
SIO_000300: 1.359e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8086
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4046
bin: 9.75e1
variant carriers: 63

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 59
allele frequency: 5.689488910318226e-3
allele num: 10370
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.319281271596407e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.769254e6

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.11e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

QD
type: SiteQuality
SIO_000300: 1.465e1

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006433768264085e-5
allele num: 66524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.769538e6

VQSLOD
type: SiteQuality
SIO_000300: 1.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

QD
type: SiteQuality
SIO_000300: 1.151e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 620
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3984
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7956
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51290508033526e-5
allele num: 66098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-1

FS
type: SiteQuality
SIO_000300: 1.611e0

DP
type: SiteQuality
SIO_000300: 1.787717e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.668e0

QD
type: SiteQuality
SIO_000300: 1.153e1

GenotypeQuality
all individuals: 3983
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.049057859238423e-5
allele num: 66126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.13e-1

DP
type: SiteQuality
SIO_000300: 1.787836e6

QD
type: SiteQuality
SIO_000300: 1.075e1

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 1.113e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.291e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3981
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511852926947267e-5
allele num: 66144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.289e-1

FS
type: SiteQuality
SIO_000300: 1.424e0

MQ
type: SiteQuality
SIO_000300: 5.902e1

QD
type: SiteQuality
SIO_000300: 9.68e0

DP
type: SiteQuality
SIO_000300: 1.787847e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.21e-1

GenotypeQuality
all individuals: 7965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3985
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 40531
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.546486355952668e-5
allele num: 66256
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.789615e6

QD
type: SiteQuality
SIO_000300: 1.247e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

FS
type: SiteQuality
SIO_000300: 2.493e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 4.900999803960007e-4
allele num: 10202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.055783627143202e-5
allele num: 66256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818181818181818e-4
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.789615e6

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.493e0

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeQuality
all individuals: 622
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8032
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3970
bin: 9.75e1
variant carriers: 6

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006704952043056e-5
allele num: 66518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.902476780185758e-4
allele num: 10336
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.465e0

QD
type: SiteQuality
SIO_000300: 1.335e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.69e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.790622e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
all individuals: 621
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2339
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.795638e6

FS
type: SiteQuality
SIO_000300: 5.725e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 5.14e0

MQRankSum
type: SiteQuality
SIO_000300: -1.512e0

GenotypeQuality
all individuals: 40058
bin: 6.25e1
variant carriers: 20

GenotypeQuality
all individuals: 235
bin: 4.25e1
variant carriers: 20

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 15

GenotypeQuality
all individuals: 244
bin: 4.75e1
variant carriers: 20

GenotypeQuality
all individuals: 227
bin: 2.75e1
variant carriers: 19

GenotypeQuality
all individuals: 507
bin: 9.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2013
bin: 7.25e1
variant carriers: 14

GenotypeQuality
all individuals: 2122
bin: 7.75e1
variant carriers: 7

African
type: Population
allele count: 82
allele frequency: 8.693808312128922e-3
allele num: 9432
num of homozygotes: 0

East Asian
type: Population
allele count: 36
allele frequency: 4.242281404666509e-3
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.106071179344033e-4
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.187648456057007e-2
allele num: 842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 54
allele frequency: 9.146341463414634e-3
allele num: 5904
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.823043266893534e-4
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 284
allele frequency: 4.488131736148425e-3
allele num: 63278
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 2.2063e2

VQSLOD
type: SiteQuality
SIO_000300: -2.239e2

QD
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.464e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.133e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

DP
type: SiteQuality
SIO_000300: 1.857053e6

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8389
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.523461304082876e-4
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.753e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

FS
type: SiteQuality
SIO_000300: 1.4051e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.555e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.399e0

DP
type: SiteQuality
SIO_000300: 1.706742e6

QD
type: SiteQuality
SIO_000300: 3.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42181
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.964e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.226e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.139e1

DP
type: SiteQuality
SIO_000300: 1.705417e6

GenotypeQuality
all individuals: 8489
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.705238e6

VQSLOD
type: SiteQuality
SIO_000300: -9.313e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

FS
type: SiteQuality
SIO_000300: 1.1177e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.345e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42306
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.209e0

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e0

QD
type: SiteQuality
SIO_000300: 1.195e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.705427e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.516e0

GenotypeQuality
all individuals: 42311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

FS
type: SiteQuality
SIO_000300: 7.533e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.81e0

DP
type: SiteQuality
SIO_000300: 1.705655e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.519e0

MQRankSum
type: SiteQuality
SIO_000300: 2.58e0

QD
type: SiteQuality
SIO_000300: 1.39e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-1

GenotypeQuality
all individuals: 685
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8496
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.896e0

DP
type: SiteQuality
SIO_000300: 1.705641e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.261e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.55e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-1

FS
type: SiteQuality
SIO_000300: 3.986e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

MQRankSum
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SIO_000300: -1.723e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495459585818323e-5
allele num: 66734
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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MQ
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SIO_000300: 5.974e1

ReadPosRankSum
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SIO_000300: -1.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

MQRankSum
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SIO_000300: -8.400000000000001e-2

DP
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SIO_000300: 1.705965e6

QD
type: SiteQuality
SIO_000300: 1.405e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
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allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
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SIO_000300: -1.671e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

DP
type: SiteQuality
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MQRankSum
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SIO_000300: -4.5e-1

FS
type: SiteQuality
SIO_000300: 1.7305e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.021e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 120

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 121
allele frequency: 1.045085506996027e-2
allele num: 11578
num of homozygotes: 2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.99e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.433e1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

MQ
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SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.72e-2

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 1.717424e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.68787238131847e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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DP
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

VQSLOD
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SIO_000300: 4.59e0

MQ
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SIO_000300: 5.941e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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Other
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ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele count: 9
allele frequency: 1.34855704396296e-4
allele num: 66738
num of homozygotes: 0

BaseQRankSum
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MQRankSum
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QD
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DP
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FS
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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African
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allele num: 10406
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Other
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

East Asian
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Latino
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African
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Other
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European (Finnish)
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South Asian
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InbreedingCoeff
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QD
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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QD
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FS
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SIO_000300: 2.419e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ClippingRankSum
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SIO_000300: -2.093e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

DP
type: SiteQuality
SIO_000300: 1.703193e6

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

FS
type: SiteQuality
SIO_000300: 1.036e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
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SIO_000300: 4.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.77e-1

MQ
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SIO_000300: 5.963e1

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 1.82e0

QD
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SIO_000300: 1.262e1

DP
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SIO_000300: 1.703287e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.703317e6

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e0

MQ
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SIO_000300: 5.913e1

FS
type: SiteQuality
SIO_000300: 1.593e0

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 2.43e0

QD
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SIO_000300: 1.224e1

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 243

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 17
allele frequency: 1.468301951977889e-3
allele num: 11578
num of homozygotes: 0

African
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allele count: 223
allele frequency: 2.142994426292524e-2
allele num: 10406
num of homozygotes: 2

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

BaseQRankSum
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SIO_000300: -3.721e0

QD
type: SiteQuality
SIO_000300: 1.292e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: 6.11e0

DP
type: SiteQuality
SIO_000300: 1.728115e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.51e-1

FS
type: SiteQuality
SIO_000300: 9.006e0

MQ
type: SiteQuality
SIO_000300: 5.873e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 1.117e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.276e0

DP
type: SiteQuality
SIO_000300: 1.70059e6

VQSLOD
type: SiteQuality
SIO_000300: -1.443e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.765904285988853e-4
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
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allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 1.701053e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

FS
type: SiteQuality
SIO_000300: 5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.57e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
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DP
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SIO_000300: 1.700614e6

FS
type: SiteQuality
SIO_000300: 5.528e0

BaseQRankSum
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SIO_000300: -4.219e0

ClippingRankSum
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SIO_000300: 4.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.379999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51267622678042e-5
allele num: 66108
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 5.902e1

ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514325519413653e-5
allele num: 66036
num of homozygotes: 0

African
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allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6516
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66088
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.321801718133271e-4
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 4.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

FS
type: SiteQuality
SIO_000300: 1.858e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

DP
type: SiteQuality
SIO_000300: 1.551581e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeDepth
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bin: 2.25e1
variant carriers: 0

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504257047444267e-5
allele num: 66478
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.56652e6

QD
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SIO_000300: 1.315e1

ReadPosRankSum
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SIO_000300: 1.23e0

VQSLOD
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SIO_000300: 1.05e-1

MQRankSum
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SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.044e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 1.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.571556e6

FS
type: SiteQuality
SIO_000300: 1.276e0

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.151e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.0099e1

ReadPosRankSum
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SIO_000300: 1.32e0

MQRankSum
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SIO_000300: -1.305e0

VQSLOD
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SIO_000300: -1.673e0

ClippingRankSum
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SIO_000300: -1.066e0

QD
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SIO_000300: 2.006e1

DP
type: SiteQuality
SIO_000300: 1.578159e6

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: -1.817e0

DP
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 9.384e0

QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 941
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.193006750908776e-4
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.406e0

VQSLOD
type: SiteQuality
SIO_000300: -2.473e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

DP
type: SiteQuality
SIO_000300: 1.580411e6

FS
type: SiteQuality
SIO_000300: 9.992000000000001e0

QD
type: SiteQuality
SIO_000300: 1.336e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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bin: 7.75e1
variant carriers: 1

GenotypeDepth
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bin: 7.5e0
variant carriers: 0

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeDepth
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bin: 1.25e1
variant carriers: 0

GenotypeDepth
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bin: 5.75e1
variant carriers: 0

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeDepth
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bin: 2.25e1
variant carriers: 0

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 143
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 270
bin: 6.25e1
variant carriers: 1

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeDepth
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.58049e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.24e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

FS
type: SiteQuality
SIO_000300: 1.343e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
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bin: 6.75e1
variant carriers: 0

GenotypeDepth
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bin: 5.75e1
variant carriers: 0

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51950
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.284e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.809e0

DP
type: SiteQuality
SIO_000300: 1.580792e6

VQSLOD
type: SiteQuality
SIO_000300: -1.19e-2

MQ
type: SiteQuality
SIO_000300: 5.882e1

GenotypeDepth
all individuals: 4923
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variant carriers: 2

GenotypeDepth
all individuals: 1092
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 343
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variant carriers: 2

GenotypeDepth
all individuals: 298
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variant carriers: 10

GenotypeDepth
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GenotypeDepth
all individuals: 176
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GenotypeDepth
all individuals: 269
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variant carriers: 1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 614
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variant carriers: 26

South Asian
type: Population
allele count: 24
allele frequency: 1.455251030802813e-3
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
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VQSLOD
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SIO_000300: 5.08e0

MQRankSum
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DP
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SIO_000300: 1.582467e6

BaseQRankSum
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SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1