8-23539005-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 23539005
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 23539005
    reference: chr 8
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167034
  ensembl protein: ENSP00000370253
  ensembl transcript: ENST00000380871
  gene symbol: NKX3-1
  hgvsc: ENST00000380871.4:c.434A>G
  hgvsp: ENSP00000370253.4:p.His145Arg
  variant of: http://identifiers.org/hgnc/7838
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167034
  ensembl protein: ENSP00000429729
  ensembl transcript: ENST00000523261
  gene symbol: NKX3-1
  hgvsc: ENST00000523261.1:c.209A>G
  hgvsp: ENSP00000429729.1:p.His70Arg
  variant of: http://identifiers.org/hgnc/7838
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4413
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20713
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4875
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3665
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14664
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His145Arg
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-12270750-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270750
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270750
    reference: chr 11
allele count: 2
allele frequency: 1.653876686954221e-5
allele num: 120928
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7582G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2234G>C
  hgvsp: ENSP00000433965.1:p.Gly745Ala
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5091G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2234G>C
  hgvsp: ENSP00000368932.3:p.Gly745Ala
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2234G>C
  hgvsp: ENSP00000441689.1:p.Gly745Ala
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7582G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7582G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2804G>C
  hgvsp: ENSP00000256194.4:p.Gly935Ala
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.222G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6771G>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13354
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly935Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

11-12270750-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270750
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270750
    reference: chr 11
allele count: 1
allele frequency: 8.269383434771103e-6
allele num: 120928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2234G>T
  hgvsp: ENSP00000441689.1:p.Gly745Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2234G>T
  hgvsp: ENSP00000368932.3:p.Gly745Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7582G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5091G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6771G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2234G>T
  hgvsp: ENSP00000433965.1:p.Gly745Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7582G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2804G>T
  hgvsp: ENSP00000256194.4:p.Gly935Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7582G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.222G>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10818
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42987
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly935Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

11-12270753-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270753
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270753
    reference: chr 11
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5094T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7579T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2237T>C
  hgvsp: ENSP00000368932.3:p.Phe746Ser
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2807T>C
  hgvsp: ENSP00000256194.4:p.Phe936Ser
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7579T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.225T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2237T>C
  hgvsp: ENSP00000441689.1:p.Phe746Ser
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7579T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2237T>C
  hgvsp: ENSP00000433965.1:p.Phe746Ser
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6774T>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42592
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe936Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

11-12270754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270754
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270754
    reference: chr 11
allele count: 2
allele frequency: 1.656973372437905e-5
allele num: 120702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7578C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7578C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2238C>T
  hgvsp: ENST00000537344.1:c.2238C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2808C>T
  hgvsp: ENST00000256194.4:c.2808C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2238C>T
  hgvsp: ENST00000527546.1:c.2238C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6775C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2238C>T
  hgvsp: ENST00000379612.3:c.2238C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.226C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5095C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7578C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe936Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

11-12270760-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270760
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270760
    reference: chr 11
allele count: 1
allele frequency: 8.304544246611745e-6
allele num: 120416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2244T>G
  hgvsp: ENSP00000441689.1:p.Phe748Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2244T>G
  hgvsp: ENSP00000433965.1:p.Phe748Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2814T>G
  hgvsp: ENSP00000256194.4:p.Phe938Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5101T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.232T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2244T>G
  hgvsp: ENSP00000368932.3:p.Phe748Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7572T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7572T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7572T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6781T>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10592
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe938Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

11-12270764-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270764
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270764
    reference: chr 11
allele count: 15
allele frequency: 1.249458567953887e-4
allele num: 120052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7568C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7568C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6785C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.236C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2248C>T
  hgvsp: ENSP00000433965.1:p.Pro750Ser
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2818C>T
  hgvsp: ENSP00000256194.4:p.Pro940Ser
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2248C>T
  hgvsp: ENSP00000368932.3:p.Pro750Ser
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5105C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2248C>T
  hgvsp: ENSP00000441689.1:p.Pro750Ser
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7568C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29057
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10394
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro940Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-12270765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270765
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270765
    reference: chr 11
allele count: 1
allele frequency: 8.339588024351597e-6
allele num: 119910
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2819C>T
  hgvsp: ENSP00000256194.4:p.Pro940Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2249C>T
  hgvsp: ENSP00000441689.1:p.Pro750Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5106C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7567C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2249C>T
  hgvsp: ENSP00000433965.1:p.Pro750Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7567C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7567C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2249C>T
  hgvsp: ENSP00000368932.3:p.Pro750Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6786C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.237C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro940Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

11-12270767-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270767
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270767
    reference: chr 11
allele count: 3
allele frequency: 2.509158428263161e-5
allele num: 119562
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7565A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7565A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.239A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2251A>G
  hgvsp: ENSP00000433965.1:p.Ser751Gly
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2251A>G
  hgvsp: ENSP00000441689.1:p.Ser751Gly
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6788A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2821A>G
  hgvsp: ENSP00000256194.4:p.Ser941Gly
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2251A>G
  hgvsp: ENSP00000368932.3:p.Ser751Gly
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7565A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5108A>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3387
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7378
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser941Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-12270770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270770
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270770
    reference: chr 11
allele count: 2
allele frequency: 1.681746325384279e-5
allele num: 118924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7562C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2254C>T
  hgvsp: ENSP00000441689.1:p.His752Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2254C>T
  hgvsp: ENSP00000368932.3:p.His752Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5111C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2824C>T
  hgvsp: ENSP00000256194.4:p.His942Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7562C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6791C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.242C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2254C>T
  hgvsp: ENSP00000433965.1:p.His752Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7562C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His942Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

11-12270781-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270781
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270781
    reference: chr 11
allele count: 61
allele frequency: 5.222245051708787e-4
allele num: 116808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7551A>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2265A>T
  hgvsp: ENST00000379612.3:c.2265A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6802A>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7551A>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2835A>T
  hgvsp: ENST00000256194.4:c.2835A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7551A>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.253A>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2265A>T
  hgvsp: ENST00000527546.1:c.2265A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2265A>T
  hgvsp: ENST00000537344.1:c.2265A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5122A>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8316
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13532
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25849
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr945Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

11-12270786-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270786
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270786
    reference: chr 11
allele count: 7
allele frequency: 6.083993881240439e-5
allele num: 115056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7546A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7546A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2270A>G
  hgvsp: ENSP00000368932.3:p.His757Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7546A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2840A>G
  hgvsp: ENSP00000256194.4:p.His947Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2270A>G
  hgvsp: ENSP00000441689.1:p.His757Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2270A>G
  hgvsp: ENSP00000433965.1:p.His757Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6807A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5127A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.258A>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7482
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24068
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His947Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

11-12270789-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270789
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270789
    reference: chr 11
allele count: 1
allele frequency: 8.780402142418123e-6
allele num: 113890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6810C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2273C>T
  hgvsp: ENSP00000441689.1:p.Pro758Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.261C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7543C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2273C>T
  hgvsp: ENSP00000433965.1:p.Pro758Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2273C>T
  hgvsp: ENSP00000368932.3:p.Pro758Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5130C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7543C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2843C>T
  hgvsp: ENSP00000256194.4:p.Pro948Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7543C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32795
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro948Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

11-12270793-GGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270793
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270791
    reference: chr 11
allele count: 1247
allele frequency: 1.109786052472322e-2
allele num: 112364
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2847+2_2847+3delTG
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7537_127-7536delTG
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2277+2_2277+3delTG
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2277+2_2277+3delTG
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7537_2215-7536delTG
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6816_112+6817delTG
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.265+2_265+3delTG
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2277+2_2277+3delTG
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7537_2041-7536delTG
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5136_2784+5137delTG
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 3.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 1.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20553
  bin: 2.75e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 13081
  bin: 2.25e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 8849
  bin: 1.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 9386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
hgvs: c.2847+2_2847+3delTG
num of homozygotes: 15
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: GGT
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-12270805-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270805
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270805
    reference: chr 11
allele count: 1
allele frequency: 9.274201027581474e-6
allele num: 107826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6826C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2847+12C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7527C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2277+12C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5146C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2277+12C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2277+12C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.265+12C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7527C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7527C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14731
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22506
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-12270818-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270818
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270818
    reference: chr 11
allele count: 1
allele frequency: 9.657170449058426e-6
allele num: 103550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7514C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.265+25C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5159C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2277+25C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7514C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2277+25C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6839C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2277+25C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2847+25C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7514C>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

11-12270842-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12270842
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12270842
    reference: chr 11
allele count: 1
allele frequency: 1.053785196425561e-5
allele num: 94896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.265+49A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2847+49A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2277+49A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-7490A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2277+49A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.112+6863A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-7490A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2784+5183A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2277+49A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-7490A>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12691
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6042
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

11-12277145-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277145
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277145
    reference: chr 11
allele count: 1
allele frequency: 9.824919926902596e-6
allele num: 101782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1187G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2365G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2848-45G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2278-45G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.334-45G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.266-45G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3067G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1187G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1187G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2785-45G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1187G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2278-45G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1187G>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

11-12277150-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277150
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277150
    reference: chr 11
allele count: 1
allele frequency: 9.714962985991024e-6
allele num: 102934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2278-40T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1182T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2370T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3072T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2848-40T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.266-40T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2278-40T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1182T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1182T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1182T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.334-40T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2785-40T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1182T>C
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15075
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

11-12277151-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277151
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277151
    reference: chr 11
allele count: 2
allele frequency: 1.950686641697878e-5
allele num: 102528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2785-39A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1181A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3073A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2278-39A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2371A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.334-39A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1181A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2848-39A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1181A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1181A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.266-39A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1181A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2278-39A>G
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

11-12277161-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277161
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277161
    reference: chr 11
allele count: 22
allele frequency: 2.091453560224356e-4
allele num: 105190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2278-29C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1171C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.266-29C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3083C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1171C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2848-29C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2381C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2785-29C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1171C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.334-29C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1171C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1171C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2278-29C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25194
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7676
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-12277164-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277164
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277164
    reference: chr 11
allele count: 1
allele frequency: 9.390729471865374e-6
allele num: 106488
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1168T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1168T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2384T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1168T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1168T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2278-26T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.334-26T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2848-26T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2278-26T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.266-26T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3086T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2785-26T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1168T>C
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

11-12277165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277165
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277165
    reference: chr 11
allele count: 2
allele frequency: 1.870627408432788e-5
allele num: 106916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3087C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1167C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2385C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2785-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2278-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.266-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1167C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.334-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1167C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2848-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1167C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1167C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2278-25C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28976
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

11-12277166-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277166
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277166
    reference: chr 11
allele count: 1
allele frequency: 9.308906761989872e-6
allele num: 107424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2278-24T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1166T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2278-24T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2386T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2785-24T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2848-24T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3088T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1166T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1166T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.334-24T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.266-24T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1166T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1166T>C
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum

11-12277167-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277167
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277167
    reference: chr 11
allele count: 2
allele frequency: 1.856114039646596e-5
allele num: 107752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2785-23C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1165C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3089C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2848-23C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2278-23C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1165C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1165C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1165C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2278-23C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2387C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1165C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.266-23C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.334-23C>G
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD

11-12277184-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277184
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277184
    reference: chr 11
allele count: 2
allele frequency: 1.737317581653926e-5
allele num: 115120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2404G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2848-6G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.266-6G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1148G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2278-6G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2785-6G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3106G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.334-6G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1148G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1148G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1148G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2278-6G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1148G>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2848-6G>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

11-12277191-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277191
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277191
    reference: chr 11
allele count: 19
allele frequency: 1.626935196602274e-4
allele num: 116784
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2411T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2849T>G
  hgvsp: ENSP00000256194.4:p.Leu950Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.335T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.267T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2786T>G
  hgvsp: ENSP00000344894.5:p.Leu929Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2279T>G
  hgvsp: ENSP00000433965.1:p.Leu760Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2279T>G
  hgvsp: ENSP00000441689.1:p.Leu760Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1141T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1141T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1141T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1141T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3113T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1141T>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10154
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39466
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Leu950Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-12277194-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277194
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277194
    reference: chr 11
allele count: 7
allele frequency: 5.972798170617246e-5
allele num: 117198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1138C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2789C>T
  hgvsp: ENSP00000344894.5:p.Thr930Met
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1138C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2282C>T
  hgvsp: ENSP00000441689.1:p.Thr761Met
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2852C>T
  hgvsp: ENSP00000256194.4:p.Thr951Met
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1138C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2282C>T
  hgvsp: ENSP00000433965.1:p.Thr761Met
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.338C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.270C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1138C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2414C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1138C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3116C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10413
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr951Met
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

11-12277195-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277195
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277195
    reference: chr 11
allele count: 246
allele frequency: 2.094793671338795e-3
allele num: 117434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2790G>A
  hgvsp: ENST00000342902.5:c.2790G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1137G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2283G>A
  hgvsp: ENST00000537344.1:c.2283G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1137G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1137G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1137G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2415G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1137G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.271G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2283G>A
  hgvsp: ENST00000527546.1:c.2283G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2853G>A
  hgvsp: ENST00000256194.4:c.2853G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.339G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3117G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 10543
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 3.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 39466
  bin: 2.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Thr951Thr
num of homozygotes: 1
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

11-12277201-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277201
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277201
    reference: chr 11
allele count: 1
allele frequency: 8.462098261885017e-6
allele num: 118174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2289G>T
  hgvsp: ENST00000527546.1:c.2289G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.345G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2859G>T
  hgvsp: ENST00000256194.4:c.2859G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2289G>T
  hgvsp: ENST00000537344.1:c.2289G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3123G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1131G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2421G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2796G>T
  hgvsp: ENST00000342902.5:c.2796G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1131G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1131G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1131G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.277G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1131G>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10994
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly953Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/11-12277202-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277202
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277202
    reference: chr 11
allele count: 2
allele frequency: 1.691074508742855e-5
allele num: 118268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2797A>C
  hgvsp: ENSP00000344894.5:p.Lys933Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2290A>C
  hgvsp: ENSP00000433965.1:p.Lys764Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2290A>C
  hgvsp: ENSP00000441689.1:p.Lys764Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1130A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.346A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1130A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1130A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3124A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2860A>C
  hgvsp: ENSP00000256194.4:p.Lys954Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2422A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.278A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1130A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1130A>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11023
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys954Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

11-12277205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277205
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277205
    reference: chr 11
allele count: 1
allele frequency: 8.443806467955754e-6
allele num: 118430
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2863G>A
  hgvsp: ENSP00000256194.4:p.Val955Met
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2425G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1127G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3127G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.349G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1127G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2293G>A
  hgvsp: ENSP00000433965.1:p.Val765Met
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1127G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2293G>A
  hgvsp: ENSP00000441689.1:p.Val765Met
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1127G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.281G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2800G>A
  hgvsp: ENSP00000344894.5:p.Val934Met
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1127G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val955Met
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-12277213-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277213
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277213
    reference: chr 11
allele count: 1
allele frequency: 8.424741781664392e-6
allele num: 118698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2808C>A
  hgvsp: ENSP00000344894.5:p.Ser936Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3135C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2301C>A
  hgvsp: ENSP00000433965.1:p.Ser767Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2301C>A
  hgvsp: ENSP00000441689.1:p.Ser767Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1119C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1119C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2433C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2871C>A
  hgvsp: ENSP00000256194.4:p.Ser957Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1119C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.357C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.289C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1119C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1119C>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser957Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

11-12277213-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277213
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277213
    reference: chr 11
allele count: 52
allele frequency: 4.380865726465484e-4
allele num: 118698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3135C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1119C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.357C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2808C>T
  hgvsp: ENST00000342902.5:c.2808C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2301C>T
  hgvsp: ENST00000537344.1:c.2301C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.289C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2433C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2871C>T
  hgvsp: ENST00000256194.4:c.2871C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2301C>T
  hgvsp: ENST00000527546.1:c.2301C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1119C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1119C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1119C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1119C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39600
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11415
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Ser957Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-12277214-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277214
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277214
    reference: chr 11
allele count: 17
allele frequency: 1.431892456453623e-4
allele num: 118724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3136G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1118G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2302G>A
  hgvsp: ENSP00000441689.1:p.Gly768Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1118G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1118G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.358G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2809G>A
  hgvsp: ENSP00000344894.5:p.Gly937Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.290G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2872G>A
  hgvsp: ENSP00000256194.4:p.Gly958Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2434G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1118G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1118G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2302G>A
  hgvsp: ENSP00000433965.1:p.Gly768Arg
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39542
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly958Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-12277221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277221
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277221
    reference: chr 11
allele count: 2
allele frequency: 1.684352366515075e-5
allele num: 118740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1111G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2309G>A
  hgvsp: ENSP00000441689.1:p.Gly770Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.297G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1111G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2879G>A
  hgvsp: ENSP00000256194.4:p.Gly960Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1111G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2309G>A
  hgvsp: ENSP00000433965.1:p.Gly770Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2441G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3143G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.365G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2816G>A
  hgvsp: ENSP00000344894.5:p.Gly939Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1111G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1111G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly960Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

11-12277240-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277240
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277240
    reference: chr 11
allele count: 1
allele frequency: 8.495599279573181e-6
allele num: 117708
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2898G>C
  hgvsp: ENST00000256194.4:c.2898G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.384G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2835G>C
  hgvsp: ENST00000342902.5:c.2835G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2328G>C
  hgvsp: ENST00000537344.1:c.2328G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1092G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1092G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2460G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3162G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2328G>C
  hgvsp: ENST00000527546.1:c.2328G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1092G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1092G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1092G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.316G>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12092
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37729
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu966Leu
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

11-12277253-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277253
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277253
    reference: chr 11
allele count: 19
allele frequency: 1.641837475372438e-4
allele num: 115724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2473A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1079A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.329A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2341A>G
  hgvsp: ENSP00000441689.1:p.Met781Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1079A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.397A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2341A>G
  hgvsp: ENSP00000433965.1:p.Met781Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2848A>G
  hgvsp: ENSP00000344894.5:p.Met950Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1079A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2911A>G
  hgvsp: ENSP00000256194.4:p.Met971Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1079A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1079A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3175A>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11778
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35494
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met971Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

11-12277254-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277254
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277254
    reference: chr 11
allele count: 3
allele frequency: 2.59286788473838e-5
allele num: 115702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1078T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1078T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.330T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2474T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2342T>A
  hgvsp: ENSP00000433965.1:p.Met781Lys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3176T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.398T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2342T>A
  hgvsp: ENSP00000441689.1:p.Met781Lys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2849T>A
  hgvsp: ENSP00000344894.5:p.Met950Lys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2912T>A
  hgvsp: ENSP00000256194.4:p.Met971Lys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1078T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1078T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1078T>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35465
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met971Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS

http://identifiers.org/exac.variant/11-12277268-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277268
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277268
    reference: chr 11
allele count: 1
allele frequency: 8.963786303334528e-6
allele num: 111560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.412C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2356C>A
  hgvsp: ENSP00000441689.1:p.Pro786Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1064C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2488C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2926C>A
  hgvsp: ENSP00000256194.4:p.Pro976Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2863C>A
  hgvsp: ENSP00000344894.5:p.Pro955Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2356C>A
  hgvsp: ENSP00000433965.1:p.Pro786Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1064C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1064C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3190C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1064C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1064C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.344C>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro976Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

11-12277269-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277269
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277269
    reference: chr 11
allele count: 3
allele frequency: 2.699201036493198e-5
allele num: 111144
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2357C>G
  hgvsp: ENSP00000433965.1:p.Pro786Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.413C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.345C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2357C>G
  hgvsp: ENSP00000441689.1:p.Pro786Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2864C>G
  hgvsp: ENSP00000344894.5:p.Pro955Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1063C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1063C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2927C>G
  hgvsp: ENSP00000256194.4:p.Pro976Arg
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1063C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3191C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1063C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1063C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2489C>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro976Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

11-12277274-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277274
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277274
    reference: chr 11
allele count: 34
allele frequency: 3.111387678904792e-4
allele num: 109276
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2932G>A
  hgvsp: ENSP00000256194.4:p.Ala978Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.350G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2869G>A
  hgvsp: ENSP00000344894.5:p.Ala957Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2494G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1058G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3196G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2362G>A
  hgvsp: ENSP00000433965.1:p.Ala788Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1058G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2362G>A
  hgvsp: ENSP00000441689.1:p.Ala788Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1058G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.418G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1058G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1058G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10229
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28256
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala978Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-12277277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277277
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277277
    reference: chr 11
allele count: 1
allele frequency: 9.277298450691159e-6
allele num: 107790
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2935C>T
  hgvsp: ENSP00000256194.4:p.Gln979Ter
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1055C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.421C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2872C>T
  hgvsp: ENSP00000344894.5:p.Gln958Ter
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1055C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.353C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2497C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1055C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1055C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2365C>T
  hgvsp: ENSP00000441689.1:p.Gln789Ter
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1055C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3199C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2365C>T
  hgvsp: ENSP00000433965.1:p.Gln789Ter
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln979Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-12277294-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277294
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277294
    reference: chr 11
allele count: 1
allele frequency: 1.02318538072728e-5
allele num: 97734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2514C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3216C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2382C>T
  hgvsp: ENST00000537344.1:c.2382C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1038C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1038C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2889C>T
  hgvsp: ENST00000342902.5:c.2889C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2382C>T
  hgvsp: ENST00000527546.1:c.2382C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1038C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.370C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1038C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2952C>T
  hgvsp: ENST00000256194.4:c.2952C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.438C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1038C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp984Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

11-12277295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277295
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277295
    reference: chr 11
allele count: 1
allele frequency: 1.035303861683404e-5
allele num: 96590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.439C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2383C>T
  hgvsp: ENST00000527546.1:c.2383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2890C>T
  hgvsp: ENST00000342902.5:c.2890C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2383C>T
  hgvsp: ENST00000537344.1:c.2383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1037C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1037C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2515C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3217C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2953C>T
  hgvsp: ENST00000256194.4:c.2953C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.371C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1037C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1037C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1037C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15768
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2953C>T
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-12277323-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277323
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277322
    reference: chr 11
allele count: 2
allele frequency: 2.602675550465879e-5
allele num: 76844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1006delC
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.373+29delC
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2892+29delC
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1006delC
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1006delC
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1006delC
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2385+29delC
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2955+29delC
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3219+29delC
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1006delC
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2546delC
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.441+29delC
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2385+29delC
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21888
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: AC
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

11-12277327-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277327
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277327
    reference: chr 11
allele count: 1
allele frequency: 1.322576378785875e-5
allele num: 75610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2385+30A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2385+30A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1005A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1005A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1005A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2547A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3219+30A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1005A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2955+30A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1005A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2892+30A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.373+30A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.441+30A>G
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21536
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

11-12277332-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277332
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277332
    reference: chr 11
allele count: 6
allele frequency: 8.241531826048734e-5
allele num: 72802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2552C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.441+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2892+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-1000C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.373+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2955+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2385+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3219+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-1000C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2385+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-1000C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-1000C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-1000C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18718
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20586
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

11-12277337-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12277337
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12277337
    reference: chr 11
allele count: 2
allele frequency: 2.883838966432115e-5
allele num: 69352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2385+40G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2892+40G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-995G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.441+40G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2385+40G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.2557G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-995G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-995G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-995G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3219+40G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2955+40G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-995G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.373+40G>C
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19273
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

11-12278285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278285
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278285
    reference: chr 11
allele count: 1
allele frequency: 9.508234130757236e-6
allele num: 105172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3505G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-47G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

11-12278288-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278288
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278288
    reference: chr 11
allele count: 5
allele frequency: 4.763084192276183e-5
allele num: 104974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-44C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-44C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-44C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-44C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-44C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-44C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-44C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3508C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-44C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-44C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-44C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-44C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-44C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7944
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11041
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

11-12278289-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278289
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278289
    reference: chr 11
allele count: 8
allele frequency: 7.609191903819814e-5
allele num: 105136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-43G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-43G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-43G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-43G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-43G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-43G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-43G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-43G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3509G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-43G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-43G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-43G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-43G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8935
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10770
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18629
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

11-12278289-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278289
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278289
    reference: chr 11
allele count: 1
allele frequency: 9.511489879774767e-6
allele num: 105136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-43G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-43G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-43G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-43G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-43G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-43G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-43G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-43G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3509G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-43G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-43G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-43G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-43G>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP

11-12278291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278291
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278291
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 105820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-41G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-41G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-41G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-41G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3511G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-41G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-41G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-41G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-41G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-41G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-41G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-41G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-41G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10265
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

11-12278296-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278296
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278296
    reference: chr 11
allele count: 2
allele frequency: 1.882671887943369e-5
allele num: 106232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3516G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-36G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-12278299-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278299
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278299
    reference: chr 11
allele count: 1
allele frequency: 9.340033250518372e-6
allele num: 107066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-33A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-33A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-33A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-33A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-33A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3519A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-33A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-33A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-33A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-33A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-33A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-33A>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-33A>C
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26498
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

11-12278299-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278299
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278299
    reference: chr 11
allele count: 506
allele frequency: 4.726056824762296e-3
allele num: 107066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-33A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-33A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-33A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-33A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-33A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-33A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-33A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-33A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3519A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-33A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-33A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-33A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-33A>G
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 10044
  bin: 2.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 1.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 26498
  bin: 2.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
num of homozygotes: 11
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

11-12278305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278305
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278305
    reference: chr 11
allele count: 1
allele frequency: 9.26234670816198e-6
allele num: 107964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3525C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-27C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

11-12278306-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278306
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278306
    reference: chr 11
allele count: 1
allele frequency: 9.233780863912538e-6
allele num: 108298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-26A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-26A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-26A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-26A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-26A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-26A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-26A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-26A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3526A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-26A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-26A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-26A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-26A>G
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

11-12278307-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278307
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278307
    reference: chr 11
allele count: 1
allele frequency: 9.216589861751152e-6
allele num: 108500
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3527C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-25C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-25C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

11-12278309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278309
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278309
    reference: chr 11
allele count: 1
allele frequency: 9.174480265692948e-6
allele num: 108998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-23C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-23C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3529C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-23C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-23C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-23C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-23C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-23C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-23C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-23C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-23C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-23C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-23C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

11-12278310-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278310
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278310
    reference: chr 11
allele count: 1
allele frequency: 9.143943965911377e-6
allele num: 109362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-22A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-22A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3530A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-22A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-22A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-22A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-22A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-22A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-22A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-22A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-22A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-22A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-22A>G
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/11-12278311-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278311
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278311
    reference: chr 11
allele count: 1
allele frequency: 9.13191971216189e-6
allele num: 109506
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-21C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-21C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-21C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-21C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-21C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-21C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-21C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-21C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3531C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-21C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-21C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-21C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-21C>A
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

11-12278316-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278316
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278316
    reference: chr 11
allele count: 1
allele frequency: 9.037015615962984e-6
allele num: 110656
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-16C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-16C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-16C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-16C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-16C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-16C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-16C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3536C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-16C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-16C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-16C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-16C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-16C>G
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11959
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

11-12278316-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278316
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278316
    reference: chr 11
allele count: 8
allele frequency: 7.229612492770387e-5
allele num: 110656
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-16C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-16C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-16C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-16C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-16C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-16C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-16C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-16C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3536C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-16C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-16C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-16C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-16C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

11-12278322-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278322
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278322
    reference: chr 11
allele count: 2
allele frequency: 1.784726312220021e-5
allele num: 112062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-10C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-10C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-10C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3542C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-10C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-10C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-10C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-10C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-10C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-10C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-10C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-10C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-10C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

11-12278323-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12278323
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12278323
    reference: chr 11
allele count: 2
allele frequency: 1.776072747939756e-5
allele num: 112608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.2278-9G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.2386-9G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.2041-9G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.2893-9G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.2956-9G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000526672
  gene symbol: MICAL2
  hgvsc: ENST00000526672.1:n.442-9G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525618
  gene symbol: MICAL2
  hgvsc: ENST00000525618.1:n.3220-9G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530021
  gene symbol: MICAL2
  hgvsc: ENST00000530021.1:n.3543G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525979
  gene symbol: MICAL2
  hgvsc: ENST00000525979.1:n.374-9G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000534563
  gene symbol: MICAL2
  hgvsc: ENST00000534563.1:n.113-9G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.2386-9G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000525075
  gene symbol: MICAL2
  hgvsc: ENST00000525075.1:n.127-9G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.2215-9G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12733
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: G

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.484e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.258e1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

FS
type: SiteQuality
SIO_000300: 4.103e0

DP
type: SiteQuality
SIO_000300: 2.239125e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

GenotypeQuality
all individuals: 3428
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7906
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.928640308582449e-4
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.783306e6

MQRankSum
type: SiteQuality
SIO_000300: 2.25e0

VQSLOD
type: SiteQuality
SIO_000300: -2.022e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.51e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.674e0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7906
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.51e-1

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.674e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

FS
type: SiteQuality
SIO_000300: 6.36e0

VQSLOD
type: SiteQuality
SIO_000300: -2.022e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.783306e6

MQRankSum
type: SiteQuality
SIO_000300: 2.25e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1871
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7801
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3423
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 358
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

FS
type: SiteQuality
SIO_000300: 5.864e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.919e0

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.77779e6

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7793
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3423
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012864933265042e-5
allele num: 66382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.05e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

DP
type: SiteQuality
SIO_000300: 1.777628e6

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

FS
type: SiteQuality
SIO_000300: 3.977e0

VQSLOD
type: SiteQuality
SIO_000300: 5.55e-1

GenotypeQuality
all individuals: 152
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42445
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3420
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7730
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66202
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-2

FS
type: SiteQuality
SIO_000300: 6.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.78e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.770007e6

VQSLOD
type: SiteQuality
SIO_000300: 4.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.74e1

GenotypeQuality
all individuals: 1806
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3414
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 8
bin: 7.5e0
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GenotypeQuality
all individuals: 949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7521
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42098
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.792639249104607e-4
allele num: 16194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.030945958233565e-5
allele num: 65986
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.96e0

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.759754e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.102e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7481
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 943
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variant carriers: 0

GenotypeQuality
all individuals: 487
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 121
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3395
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517128379403465e-5
allele num: 65914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 9.425000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

DP
type: SiteQuality
SIO_000300: 1.755926e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.718e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

QD
type: SiteQuality
SIO_000300: 1.441e1

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
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variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
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variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523043650431021e-5
allele num: 65658
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.239003840911907e-4
allele num: 16142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

FS
type: SiteQuality
SIO_000300: 5.42e-1

DP
type: SiteQuality
SIO_000300: 1.744302e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

QD
type: SiteQuality
SIO_000300: 1.099e1

GenotypeQuality
all individuals: 333
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3378
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 295
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variant carriers: 0

GenotypeQuality
all individuals: 40318
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variant carriers: 0

GenotypeQuality
all individuals: 2578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
all individuals: 476
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variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7074
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.246105919003115e-4
allele num: 16050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65268
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.062e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.38e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 9.512e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 7.09e0

VQSLOD
type: SiteQuality
SIO_000300: -1.621e0

DP
type: SiteQuality
SIO_000300: 1.724814e6

GenotypeQuality
all individuals: 584
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4933
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 874
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 316
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variant carriers: 0

GenotypeQuality
all individuals: 378
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 196
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variant carriers: 0

GenotypeQuality
all individuals: 454
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variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3393
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variant carriers: 61

GenotypeQuality
all individuals: 6428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 57
allele frequency: 8.929410658896513e-4
allele num: 63834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.972386587771203e-4
allele num: 10140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.534212948757288e-4
allele num: 6518
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.892050506846879e-5
allele num: 11246
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

QD
type: SiteQuality
SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 1.656109e6

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
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GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
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variant carriers: 0

GenotypeQuality
all individuals: 291
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variant carriers: 0

GenotypeQuality
all individuals: 1448
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variant carriers: 0

GenotypeQuality
all individuals: 913
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GenotypeQuality
all individuals: 5951
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GenotypeQuality
all individuals: 34493
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variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 8.25e1
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GenotypeQuality
all individuals: 3337
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 450
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variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.965400676078744e-4
allele num: 10058
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.023641941887746e-5
allele num: 11082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15716
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.459e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 1.603126e6

GenotypeQuality
all individuals: 1072
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
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variant carriers: 0

GenotypeQuality
all individuals: 1380
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variant carriers: 0

GenotypeQuality
all individuals: 7776
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GenotypeQuality
all individuals: 808
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GenotypeQuality
all individuals: 121
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GenotypeQuality
all individuals: 5731
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 1975
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GenotypeQuality
all individuals: 3328
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GenotypeQuality
all individuals: 445
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 486
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.400409626216078e-5
allele num: 15624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10978
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

DP
type: SiteQuality
SIO_000300: 1.570005e6

VQSLOD
type: SiteQuality
SIO_000300: 9.05e-1

QD
type: SiteQuality
SIO_000300: 1.535e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.152e0

FS
type: SiteQuality
SIO_000300: 1.969e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2101
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 378
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 7.5e0
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GenotypeQuality
all individuals: 4475
bin: 9.75e1
variant carriers: 1217

GenotypeQuality
all individuals: 99
bin: 1.75e1
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GenotypeQuality
all individuals: 1279
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GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 643
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 435
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 483
bin: 4.75e1
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GenotypeQuality
all individuals: 2331
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29987
bin: 6.25e1
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GenotypeQuality
all individuals: 4981
bin: 6.75e1
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GenotypeQuality
all individuals: 761
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1242
bin: 7.25e1
variant carriers: 1

Latino
type: Population
allele count: 9
allele frequency: 8.350343291890889e-4
allele num: 10778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 37
allele frequency: 5.839646464646465e-3
allele num: 6336
num of homozygotes: 0

African
type: Population
allele count: 37
allele frequency: 3.730590844928413e-3
allele num: 9918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1141
allele frequency: 1.868408986703347e-2
allele num: 61068
num of homozygotes: 14

Other
type: Population
allele count: 5
allele frequency: 5.85480093676815e-3
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.163241566498643e-3
allele num: 15474
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

QD
type: SiteQuality
SIO_000300: 1.817e1

MQ
type: SiteQuality
SIO_000300: 6.017e1

DP
type: SiteQuality
SIO_000300: 1.512049e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
all individuals: 1000
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4304
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.31891321551042e-4
allele num: 7582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.524e0

VQSLOD
type: SiteQuality
SIO_000300: -1.218e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.58e0

DP
type: SiteQuality
SIO_000300: 1.343524e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.785181164337088e-5
allele num: 14738
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.221e0

BaseQRankSum
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SIO_000300: -1.92e0

VQSLOD
type: SiteQuality
SIO_000300: -4.442e-1

DP
type: SiteQuality
SIO_000300: 1.199082e6

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.001e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1557
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GenotypeQuality
all individuals: 791
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.13063320022818e-5
allele num: 14024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6660
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.78e0

DP
type: SiteQuality
SIO_000300: 1.08347e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

GenotypeDepth
all individuals: 152
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 113
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variant carriers: 0

GenotypeDepth
all individuals: 289
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 610
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variant carriers: 0

GenotypeQuality
all individuals: 303
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.767221574240978e-5
allele num: 56586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.35e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

FS
type: SiteQuality
SIO_000300: 4.783e0

DP
type: SiteQuality
SIO_000300: 1.178108e6

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.874e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeDepth
all individuals: 97
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 5183
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variant carriers: 0

GenotypeQuality
all individuals: 2528
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 948
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.745261614716046e-5
allele num: 57298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5326
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.457e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.975e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.008e1

FS
type: SiteQuality
SIO_000300: 3.197e0

BaseQRankSum
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SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 1.209237e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14114
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.357378595002357e-4
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57078
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.671e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

MQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.2273e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 22

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

East Asian
type: Population
allele count: 22
allele frequency: 2.985884907709012e-3
allele num: 7368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5468
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.712e0

MQ
type: SiteQuality
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VQSLOD
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QD
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ClippingRankSum
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DP
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.4e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8826
num of homozygotes: 0

South Asian
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allele frequency: 6.899406651028011e-5
allele num: 14494
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59122
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7550
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.037e1

DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.84e-1

InbreedingCoeff
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SIO_000300: -9.0e-4

ClippingRankSum
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SIO_000300: 1.33e0

VQSLOD
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SIO_000300: 1.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

BaseQRankSum
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SIO_000300: 8.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.684465855877101e-5
allele num: 59366
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.809627216793341e-4
allele num: 5526
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -8.01e-1

DP
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MQ
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -9.0e-4

FS
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.202e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 4.11e-1

MQRankSum
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BaseQRankSum
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SIO_000300: 1.83e0

VQSLOD
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SIO_000300: -4.858e-1

InbreedingCoeff
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SIO_000300: -7.0e-4

MQ
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SIO_000300: 6.0e1

DP
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SIO_000300: 1.370259e6

QD
type: SiteQuality
SIO_000300: 1.53e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.75e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1908
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variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8896
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.926411096127914e-4
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
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MQRankSum
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SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.89e-1

InbreedingCoeff
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SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.37955e6

VQSLOD
type: SiteQuality
SIO_000300: 5.42e-1

GenotypeDepth
all individuals: 152
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 843
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 44205
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.089427496865859e-4
allele num: 9572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63702
num of homozygotes: 0

VQSLOD
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SIO_000300: 1.95e0

DP
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 6.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.78853601859024e-4
allele num: 64550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.931761343336905e-5
allele num: 11196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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SIO_000300: 5.952e1

BaseQRankSum
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QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.724154977445467e-5
allele num: 64732
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.262307498106539e-4
allele num: 15844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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VQSLOD
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.432e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeDepth
all individuals: 412
bin: 5.75e1
variant carriers: 6

GenotypeDepth
all individuals: 237
bin: 7.25e1
variant carriers: 4

GenotypeDepth
all individuals: 215
bin: 7.75e1
variant carriers: 4

GenotypeDepth
all individuals: 460
bin: 9.75e1
variant carriers: 40

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3637
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46053
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4093
bin: 9.75e1
variant carriers: 237

GenotypeQuality
all individuals: 2231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 306
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 254
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 888
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 305
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 232
allele frequency: 2.347227842978551e-2
allele num: 9884
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.62877244954638e-5
allele num: 64812
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.763891354518019e-4
allele num: 11266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

DP
type: SiteQuality
SIO_000300: 1.543341e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

GenotypeDepth
all individuals: 1588
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 488
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 780
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3908
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.264094211976948e-5
allele num: 15964
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.140000000000001e0

FS
type: SiteQuality
SIO_000300: 1.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

DP
type: SiteQuality
SIO_000300: 1.549112e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.248e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: -1.501e0

GenotypeDepth
all individuals: 527
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 287
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 783
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 488
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 47183
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.260956674179814e-5
allele num: 15972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.844861135680169e-5
allele num: 11306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

FS
type: SiteQuality
SIO_000300: 6.745e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.106e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.549978e6

GenotypeDepth
all individuals: 488
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 338
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 214
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 435
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3771
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3907
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 246
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47003
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
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variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528771479239283e-5
allele num: 65412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.36e-1

DP
type: SiteQuality
SIO_000300: 1.552034e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

QD
type: SiteQuality
SIO_000300: 1.275e1

FS
type: SiteQuality
SIO_000300: 2.621e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.412e0

MQRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQ
type: SiteQuality
SIO_000300: 5.84e1

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 214
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 533
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 436
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 224
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3767
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3953
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 202
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.000200040008002e-4
allele num: 9998
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.45e-1

DP
type: SiteQuality
SIO_000300: 1.558625e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

GenotypeDepth
all individuals: 675
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 214
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 436
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 47147
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3767
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3953
bin: 9.75e1
variant carriers: 49

GenotypeQuality
all individuals: 338
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16052
num of homozygotes: 0

Latino
type: Population
allele count: 49
allele frequency: 4.314899612539626e-3
allele num: 11356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.000600120024005e-4
allele num: 9998
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.558625e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

FS
type: SiteQuality
SIO_000300: 5.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
all individuals: 437
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 95
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 451
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3761
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
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GenotypeQuality
all individuals: 930
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 47149
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3920
bin: 9.75e1
variant carriers: 16

Latino
type: Population
allele count: 1
allele frequency: 8.804366966015144e-5
allele num: 11358
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.000200040008002e-4
allele num: 9998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.585288522511097e-4
allele num: 6308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
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allele count: 12
allele frequency: 1.830831197363603e-4
allele num: 65544
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.165772907437631e-4
allele num: 8578
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.225874735400324e-5
allele num: 16062
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.558646e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 1.12e-1

ReadPosRankSum
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SIO_000300: 5.590000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

QD
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SIO_000300: 9.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.759633996128805e-4
allele num: 11366
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.149e0

FS
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SIO_000300: 1.1693e1

InbreedingCoeff
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SIO_000300: 6.7e-3

MQRankSum
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ClippingRankSum
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MQ
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SIO_000300: 5.904e1

VQSLOD
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SIO_000300: -1.404e0

ReadPosRankSum
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SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.559676e6

QD
type: SiteQuality
SIO_000300: 1.262e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170686022008897e-4
allele num: 8542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64992
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15920
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

MQRankSum
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SIO_000300: 1.18e0

InbreedingCoeff
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SIO_000300: -3.0e-4

QD
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ReadPosRankSum
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SIO_000300: 6.39e-1

VQSLOD
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SIO_000300: -2.081e0

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.131e0

DP
type: SiteQuality
SIO_000300: 1.549018e6

MQ
type: SiteQuality
SIO_000300: 5.781e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 19

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.583439815997955e-4
allele num: 15652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.254495418582106e-5
allele num: 63954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

QD
type: SiteQuality
SIO_000300: 1.119e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.518626e6

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-2

FS
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.691898654989052e-5
allele num: 63940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 1.518154e6

InbreedingCoeff
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SIO_000300: -4.0e-4

VQSLOD
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BaseQRankSum
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SIO_000300: -1.103e0

MQRankSum
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ReadPosRankSum
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QD
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SIO_000300: 1.123e1

ClippingRankSum
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SIO_000300: -6.830000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.33e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.617913538700492e-5
allele num: 61808
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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MQ
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QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.703703703703704e-4
allele num: 8100
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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DP
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MQ
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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East Asian
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allele frequency: 4.303797468354431e-3
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Other
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QD
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DP
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.671737604065666e-5
allele num: 59818
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East Asian
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African
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European (Finnish)
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Latino
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South Asian
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Other
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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African
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East Asian
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South Asian
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European (Finnish)
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Other
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BaseQRankSum
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MQ
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InbreedingCoeff
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DP
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FS
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Non-Finnish)
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allele count: 1
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num of homozygotes: 0

South Asian
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Latino
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Other
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European (Finnish)
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ClippingRankSum
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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QD
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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African
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Other
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European (Finnish)
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FS
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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South Asian
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African
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
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DP
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MQRankSum
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MQ
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 5.156765676567657e-5
allele num: 38784
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3062
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

BaseQRankSum
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FS
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SIO_000300: 2.994e0

VQSLOD
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SIO_000300: 1.03e0

DP
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QD
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: -1.58e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10702
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7990
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

South Asian
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allele frequency: 1.12082492714638e-4
allele num: 8922
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61058
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.123e0

VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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MQRankSum
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SIO_000300: 6.879999999999999e-1

InbreedingCoeff
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SIO_000300: -8.0e-4

ClippingRankSum
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SIO_000300: -8.01e-1

MQ
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SIO_000300: 5.952e1

DP
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SIO_000300: 1.174141e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.201292523701736e-5
allele num: 60966
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -7.1e-1

InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.638e0

FS
type: SiteQuality
SIO_000300: 3.804e0

QD
type: SiteQuality
SIO_000300: 1.195e1

DP
type: SiteQuality
SIO_000300: 1.19122e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.114330287497214e-4
allele num: 8974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.147540983606557e-4
allele num: 61000
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10702
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.204378e6

FS
type: SiteQuality
SIO_000300: 3.203e0

InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -2.03e-1

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.111e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.639344262295082e-5
allele num: 61000
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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QD
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SIO_000300: 1.111e1

ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61380
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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DP
type: SiteQuality
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.479543763947434e-4
allele num: 8066
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South Asian
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African
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Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 61956
num of homozygotes: 0

East Asian
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num of homozygotes: 0

African
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allele frequency: 1.012965964343598e-4
allele num: 9872
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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Latino
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InbreedingCoeff
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SIO_000300: 3.66e-2

VQSLOD
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ClippingRankSum
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FS
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DP
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 4.730551053484603e-2
allele num: 9872
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European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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allele frequency: 1.291238943766544e-4
allele num: 61956
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South Asian
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QD
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FS
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 10992
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East Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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allele num: 6132
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South Asian
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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MQRankSum
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FS
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.044713748432929e-4
allele num: 9572
num of homozygotes: 0

African
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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QD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 62672
num of homozygotes: 0

East Asian
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European (Finnish)
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Latino
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African
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Other
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South Asian
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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MQRankSum
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ReadPosRankSum
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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Latino
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East Asian
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Other
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MQ
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DP
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QD
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ClippingRankSum
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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African
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East Asian
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European (Finnish)
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Other
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FS
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MQRankSum
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1392
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2042
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1026
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6339
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5075
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584233706156332e-5
allele num: 63122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.575e0

FS
type: SiteQuality
SIO_000300: 5.013e0

MQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.107e1

VQSLOD
type: SiteQuality
SIO_000300: 8.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

DP
type: SiteQuality
SIO_000300: 1.369471e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.448e0

GenotypeDepth
all individuals: 123
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4747
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.919015340706386e-5
allele num: 11212
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.163e0

QD
type: SiteQuality
SIO_000300: 1.305e1

FS
type: SiteQuality
SIO_000300: 1.115e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

DP
type: SiteQuality
SIO_000300: 1.393084e6

GenotypeDepth
all individuals: 685
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4747
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63624
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 7.849293563579278e-4
allele num: 10192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 1.115e0

QD
type: SiteQuality
SIO_000300: 1.305e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

DP
type: SiteQuality
SIO_000300: 1.393084e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.163e0

GenotypeDepth
all individuals: 422
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 271
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4241
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36582
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2045
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 721
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.852216748768474e-5
allele num: 10150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559332605644784e-5
allele num: 64130
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.420154e6

QD
type: SiteQuality
SIO_000300: 2.007e1

FS
type: SiteQuality
SIO_000300: 5.051e0

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.299e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.452e0

GenotypeDepth
all individuals: 270
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0