11-12237886-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12237886
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12237886
    reference: chr 11
allele count: 3
allele frequency: 2.51454243709453e-5
allele num: 119306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.948+20G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000524730
  gene symbol: MICAL2
  hgvsc: ENST00000524730.1:n.277G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.948+20G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.948+20G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.948+20G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.774+20G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.948+20G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.948+20G>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8887
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22254
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7389
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-12237888-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12237888
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12237888
    reference: chr 11
allele count: 1
allele frequency: 8.386306838194597e-6
allele num: 119242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.948+22T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.948+22T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000524730
  gene symbol: MICAL2
  hgvsc: ENST00000524730.1:n.279T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.948+22T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.774+22T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.948+22T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.948+22T>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.948+22T>G
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21475
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29016
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7319
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

11-12237891-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12237891
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12237891
    reference: chr 11
allele count: 3
allele frequency: 2.523043800040369e-5
allele num: 118904
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.948+25C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.948+25C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.948+25C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.948+25C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.948+25C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.774+25C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.948+25C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000524730
  gene symbol: MICAL2
  hgvsc: ENST00000524730.1:n.282C>G
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11453
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25010
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

11-12237893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12237893
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12237893
    reference: chr 11
allele count: 5
allele frequency: 4.217629692113033e-5
allele num: 118550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000524730
  gene symbol: MICAL2
  hgvsc: ENST00000524730.1:n.284C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.948+27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.948+27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.948+27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.948+27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.948+27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.948+27C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.774+27C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7136
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5544
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3535
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum

11-12237894-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12237894
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12237894
    reference: chr 11
allele count: 3
allele frequency: 2.528743383121481e-5
allele num: 118636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.948+28G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000524730
  gene symbol: MICAL2
  hgvsc: ENST00000524730.1:n.285G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.948+28G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.948+28G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.948+28G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.948+28G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.774+28G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.948+28G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18968
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-12237897-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12237897
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12237897
    reference: chr 11
allele count: 3
allele frequency: 2.529596276434281e-5
allele num: 118596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.948+31T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.948+31T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.948+31T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.948+31T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.948+31T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.774+31T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000524730
  gene symbol: MICAL2
  hgvsc: ENST00000524730.1:n.288T>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.948+31T>A
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7479
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3861
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4279
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22765
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

11-12237899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12237899
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12237899
    reference: chr 11
allele count: 1
allele frequency: 8.449799739746167e-6
allele num: 118346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.948+33C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.948+33C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.948+33C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000524730
  gene symbol: MICAL2
  hgvsc: ENST00000524730.1:n.290C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.948+33C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.948+33C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.774+33C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.948+33C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9079
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4005
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5536
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4357
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4196
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

11-12237900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12237900
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12237900
    reference: chr 11
allele count: 1
allele frequency: 8.460666362082677e-6
allele num: 118194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.948+34G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.948+34G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.948+34G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.948+34G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000524730
  gene symbol: MICAL2
  hgvsc: ENST00000524730.1:n.291G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.948+34G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.774+34G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.948+34G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4343
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

11-12237901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12237901
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12237901
    reference: chr 11
allele count: 5
allele frequency: 4.233126756747604e-5
allele num: 118116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.774+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.948+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.948+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000524730
  gene symbol: MICAL2
  hgvsc: ENST00000524730.1:n.292C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.948+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.948+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.948+35C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.948+35C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16010
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10066
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4361
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

11-12237902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12237902
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12237902
    reference: chr 11
allele count: 7
allele frequency: 5.938343032626954e-5
allele num: 117878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000524730
  gene symbol: MICAL2
  hgvsc: ENST00000524730.1:n.293G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.774+36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.948+36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.948+36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.948+36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.948+36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.948+36G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.948+36G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5541
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4570
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

11-12237910-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12237910
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12237910
    reference: chr 11
allele count: 12
allele frequency: 1.026026881904306e-4
allele num: 116956
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.774+44C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.948+44C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000524730
  gene symbol: MICAL2
  hgvsc: ENST00000524730.1:n.301C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.948+44C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.948+44C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.948+44C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.948+44C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.948+44C>G
  variant of: http://identifiers.org/hgnc/24693
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5476
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12992
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12982
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11704
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2991
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5541
  bin: 9.75e1
  variant carriers: 12
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

11-12241697-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241697
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241697
    reference: chr 11
allele count: 5
allele frequency: 4.16382138871771e-5
allele num: 120082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-51G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-51G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-51G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-51G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-51G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-51G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-51G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17242
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19774
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

11-12241697-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241697
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241697
    reference: chr 11
allele count: 2
allele frequency: 1.665528555487084e-5
allele num: 120082
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-51G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-51G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-51G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-51G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-51G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-51G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-51G>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4359
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3013
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

11-12241697-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241697
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241697
    reference: chr 11
allele count: 1
allele frequency: 8.327642777435419e-6
allele num: 120082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-51G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-51G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-51G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-51G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-51G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-51G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-51G>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19774
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3013
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP

11-12241698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241698
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241698
    reference: chr 11
allele count: 50
allele frequency: 4.168820557287932e-4
allele num: 119938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-50C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-50C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-50C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-50C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-50C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-50C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-50C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17277
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11959
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10285
  bin: 9.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20257
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD

11-12241701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241701
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241701
    reference: chr 11
allele count: 1
allele frequency: 8.324592511196577e-6
allele num: 120126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-47G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-47G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4324
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7275
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3383
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

11-12241707-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241707
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241707
    reference: chr 11
allele count: 1
allele frequency: 8.316008316008316e-6
allele num: 120250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-41T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-41T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-41T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-41T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-41T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-41T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-41T>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10033
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10238
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

11-12241711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241711
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241711
    reference: chr 11
allele count: 1
allele frequency: 8.310893919750009e-6
allele num: 120324
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-37G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-37G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-37G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-37G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-37G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-37G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-37G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4295
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10238
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP

11-12241711-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241711
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241711
    reference: chr 11
allele count: 2
allele frequency: 1.662178783950002e-5
allele num: 120324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-37G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-37G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-37G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-37G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-37G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-37G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-37G>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7426
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4295
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

11-12241715-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241715
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241715
    reference: chr 11
allele count: 6
allele frequency: 4.982147305488665e-5
allele num: 120430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-33G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-33G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-33G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-33G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-33G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-33G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-33G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7521
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

11-12241717-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241717
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241717
    reference: chr 11
allele count: 1
allele frequency: 8.299306178003518e-6
allele num: 120492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-31G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-31G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-31G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-31G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-31G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-31G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-31G>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4317
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

11-12241722-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241722
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241722
    reference: chr 11
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-26C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-26C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-26C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-26C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-26C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-26C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-26C>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18613
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10232
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26089
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

11-12241723-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241723
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241723
    reference: chr 11
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-25T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-25T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-25T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-25T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-25T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-25T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-25T>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7709
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-12241724-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241724
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241724
    reference: chr 11
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-24G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-24G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-24G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-24G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-24G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-24G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-24G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

11-12241730-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241730
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241730
    reference: chr 11
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-18T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-18T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-18T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-18T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-18T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-18T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-18T>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4356
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7778
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

11-12241739-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241739
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241739
    reference: chr 11
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-9C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-9C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-9C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-9C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-9C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-9C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-9C>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12465
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3443
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

11-12241743-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241743
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241743
    reference: chr 11
allele count: 2
allele frequency: 1.649484536082474e-5
allele num: 121250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-5C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-5C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-5C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-5C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-5C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-5C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-5C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3442
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.949-5C>T
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

11-12241746-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241746
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241746
    reference: chr 11
allele count: 2
allele frequency: 1.648967746190884e-5
allele num: 121288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.949-2A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.949-2A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.775-2A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.949-2A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.949-2A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.949-2A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.949-2A>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
hgvs: c.949-2A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

11-12241752-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241752
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241752
    reference: chr 11
allele count: 15
allele frequency: 1.236236566229314e-4
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.953A>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.779A>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.953A>T
  hgvsp: ENSP00000433965.1:p.Tyr318Phe
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.953A>T
  hgvsp: ENSP00000256194.4:p.Tyr318Phe
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.953A>T
  hgvsp: ENSP00000441689.1:p.Tyr318Phe
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.953A>T
  hgvsp: ENSP00000368932.3:p.Tyr318Phe
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.953A>T
  hgvsp: ENSP00000344894.5:p.Tyr318Phe
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10240
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3442
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr318Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

11-12241756-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241756
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241756
    reference: chr 11
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.957C>T
  hgvsp: ENST00000379612.3:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.957C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.957C>T
  hgvsp: ENST00000537344.1:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.783C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.957C>T
  hgvsp: ENST00000342902.5:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.957C>T
  hgvsp: ENST00000527546.1:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.957C>T
  hgvsp: ENST00000256194.4:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10230
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile319Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

11-12241757-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241757
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241757
    reference: chr 11
allele count: 3
allele frequency: 2.472024918011174e-5
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.784G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.958G>A
  hgvsp: ENSP00000433965.1:p.Asp320Asn
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.958G>A
  hgvsp: ENSP00000256194.4:p.Asp320Asn
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.958G>A
  hgvsp: ENSP00000344894.5:p.Asp320Asn
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.958G>A
  hgvsp: ENSP00000441689.1:p.Asp320Asn
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.958G>A
  hgvsp: ENSP00000368932.3:p.Asp320Asn
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.958G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp320Asn
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

11-12241772-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241772
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241771
    reference: chr 11
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.974delT
  hgvsp: ENSP00000344894.5:p.Leu325ArgfsTer6
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.974delT
  hgvsp: ENSP00000368932.3:p.Leu325ArgfsTer6
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.800delT
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.974delT
  hgvsp: ENSP00000441689.1:p.Leu325ArgfsTer6
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.974delT
  hgvsp: ENSP00000256194.4:p.Leu325ArgfsTer6
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.974delT
  hgvsp: ENSP00000433965.1:p.Leu325ArgfsTer6
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.974delT
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27464
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu325ArgfsTer6
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CT
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

11-12241778-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241778
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241778
    reference: chr 11
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.805G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.979G>A
  hgvsp: ENSP00000256194.4:p.Ala327Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.979G>A
  hgvsp: ENSP00000344894.5:p.Ala327Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.979G>A
  hgvsp: ENSP00000441689.1:p.Ala327Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.979G>A
  hgvsp: ENSP00000368932.3:p.Ala327Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.979G>A
  hgvsp: ENSP00000433965.1:p.Ala327Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.979G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27473
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4375
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala327Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

11-12241779-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241779
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241779
    reference: chr 11
allele count: 9
allele frequency: 7.413631196560076e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.980C>T
  hgvsp: ENSP00000433965.1:p.Ala327Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.980C>T
  hgvsp: ENSP00000441689.1:p.Ala327Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.980C>T
  hgvsp: ENSP00000368932.3:p.Ala327Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.980C>T
  hgvsp: ENSP00000256194.4:p.Ala327Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.980C>T
  hgvsp: ENSP00000344894.5:p.Ala327Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.806C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.980C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10234
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala327Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

11-12241780-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241780
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241780
    reference: chr 11
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.981G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.981G>A
  hgvsp: ENST00000537344.1:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.981G>A
  hgvsp: ENST00000379612.3:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.981G>A
  hgvsp: ENST00000256194.4:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.807G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.981G>A
  hgvsp: ENST00000342902.5:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.981G>A
  hgvsp: ENST00000527546.1:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3442
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4378
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala327Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

11-12241786-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241786
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241786
    reference: chr 11
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.987C>T
  hgvsp: ENST00000256194.4:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.987C>T
  hgvsp: ENST00000527546.1:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.987C>T
  hgvsp: ENST00000537344.1:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.987C>T
  hgvsp: ENST00000342902.5:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.987C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.987C>T
  hgvsp: ENST00000379612.3:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.813C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7911
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn329Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-12241793-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241793
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241793
    reference: chr 11
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.994C>G
  hgvsp: ENSP00000433965.1:p.Gln332Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.994C>G
  hgvsp: ENSP00000344894.5:p.Gln332Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.994C>G
  hgvsp: ENSP00000441689.1:p.Gln332Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.994C>G
  hgvsp: ENSP00000256194.4:p.Gln332Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.820C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.994C>G
  hgvsp: ENSP00000368932.3:p.Gln332Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.994C>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27481
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln332Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

11-12241817-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241817
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241817
    reference: chr 11
allele count: 5
allele frequency: 4.118276912939626e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1018C>T
  hgvsp: ENSP00000344894.5:p.Arg340Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1018C>T
  hgvsp: ENSP00000433965.1:p.Arg340Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1018C>T
  hgvsp: ENSP00000256194.4:p.Arg340Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1018C>T
  hgvsp: ENSP00000441689.1:p.Arg340Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1018C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1018C>T
  hgvsp: ENSP00000368932.3:p.Arg340Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.844C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12524
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27485
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7903
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10229
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg340Trp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum

11-12241818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241818
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241818
    reference: chr 11
allele count: 54
allele frequency: 4.447665799097289e-4
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1019G>A
  hgvsp: ENSP00000441689.1:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1019G>A
  hgvsp: ENSP00000256194.4:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.845G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1019G>A
  hgvsp: ENSP00000433965.1:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1019G>A
  hgvsp: ENSP00000344894.5:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1019G>A
  hgvsp: ENSP00000368932.3:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1019G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7901
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg340Gln
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS

11-12241831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241831
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241831
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1032C>T
  hgvsp: ENST00000527546.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1032C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1032C>T
  hgvsp: ENST00000537344.1:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1032C>T
  hgvsp: ENST00000342902.5:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1032C>T
  hgvsp: ENST00000256194.4:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1032C>T
  hgvsp: ENST00000379612.3:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.858C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp344Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

11-12241842-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241842
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241842
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1043A>G
  hgvsp: ENSP00000256194.4:p.Asn348Ser
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.869A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1043A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1043A>G
  hgvsp: ENSP00000433965.1:p.Asn348Ser
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1043A>G
  hgvsp: ENSP00000368932.3:p.Asn348Ser
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1043A>G
  hgvsp: ENSP00000441689.1:p.Asn348Ser
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1043A>G
  hgvsp: ENSP00000344894.5:p.Asn348Ser
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn348Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

11-12241845-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241845
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241845
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1046A>G
  hgvsp: ENSP00000368932.3:p.Tyr349Cys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1046A>G
  hgvsp: ENSP00000441689.1:p.Tyr349Cys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.872A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1046A>G
  hgvsp: ENSP00000344894.5:p.Tyr349Cys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1046A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1046A>G
  hgvsp: ENSP00000433965.1:p.Tyr349Cys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1046A>G
  hgvsp: ENSP00000256194.4:p.Tyr349Cys
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27503
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr349Cys
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

11-12241852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241852
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241852
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1053G>A
  hgvsp: ENST00000379612.3:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1053G>A
  hgvsp: ENST00000527546.1:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1053G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1053G>A
  hgvsp: ENST00000342902.5:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1053G>A
  hgvsp: ENST00000537344.1:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1053G>A
  hgvsp: ENST00000256194.4:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.879G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27500
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4377
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu351Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-12241857-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241857
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241857
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.884C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1058C>A
  hgvsp: ENSP00000344894.5:p.Ser353Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1058C>A
  hgvsp: ENSP00000441689.1:p.Ser353Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1058C>A
  hgvsp: ENSP00000368932.3:p.Ser353Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1058C>A
  hgvsp: ENSP00000433965.1:p.Ser353Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1058C>A
  hgvsp: ENSP00000256194.4:p.Ser353Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1058C>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27500
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser353Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-12241872-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241872
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241872
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1073T>C
  hgvsp: ENSP00000441689.1:p.Met358Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1073T>C
  hgvsp: ENSP00000256194.4:p.Met358Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.899T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1073T>C
  hgvsp: ENSP00000433965.1:p.Met358Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1073T>C
  hgvsp: ENSP00000344894.5:p.Met358Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1073T>C
  hgvsp: ENSP00000368932.3:p.Met358Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1073T>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10204
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met358Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/11-12241877-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241877
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241877
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1078C>A
  hgvsp: ENSP00000441689.1:p.His360Asn
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1078C>A
  hgvsp: ENSP00000256194.4:p.His360Asn
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.904C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1078C>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1078C>A
  hgvsp: ENSP00000368932.3:p.His360Asn
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1078C>A
  hgvsp: ENSP00000433965.1:p.His360Asn
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1078C>A
  hgvsp: ENSP00000344894.5:p.His360Asn
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His360Asn
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

11-12241881-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241881
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241881
    reference: chr 11
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.908A>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1082A>T
  hgvsp: ENSP00000256194.4:p.Tyr361Phe
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1082A>T
  hgvsp: ENSP00000433965.1:p.Tyr361Phe
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1082A>T
  hgvsp: ENSP00000441689.1:p.Tyr361Phe
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1082A>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1082A>T
  hgvsp: ENSP00000344894.5:p.Tyr361Phe
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1082A>T
  hgvsp: ENSP00000368932.3:p.Tyr361Phe
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12058
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7916
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr361Phe
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

11-12241884-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241884
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241884
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1085G>A
  hgvsp: ENSP00000344894.5:p.Gly362Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1085G>A
  hgvsp: ENSP00000368932.3:p.Gly362Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1085G>A
  hgvsp: ENSP00000441689.1:p.Gly362Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1085G>A
  hgvsp: ENSP00000433965.1:p.Gly362Glu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1085G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.911G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1085G>A
  hgvsp: ENSP00000256194.4:p.Gly362Glu
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7915
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27503
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly362Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

11-12241885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241885
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241885
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1086G>A
  hgvsp: ENST00000527546.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1086G>A
  hgvsp: ENST00000379612.3:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1086G>A
  hgvsp: ENST00000537344.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1086G>A
  hgvsp: ENST00000256194.4:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1086G>A
  hgvsp: ENST00000342902.5:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.912G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1086G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27506
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2487
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly362Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

11-12241886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241886
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241886
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1087C>T
  hgvsp: ENSP00000256194.4:p.Gln363Ter
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1087C>T
  hgvsp: ENSP00000344894.5:p.Gln363Ter
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1087C>T
  hgvsp: ENSP00000441689.1:p.Gln363Ter
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1087C>T
  hgvsp: ENSP00000433965.1:p.Gln363Ter
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.913C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1087C>T
  hgvsp: ENSP00000368932.3:p.Gln363Ter
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1087C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7915
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln363Ter
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

11-12241894-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241894
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241894
    reference: chr 11
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1095T>C
  hgvsp: ENST00000342902.5:c.1095T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1095T>C
  hgvsp: ENST00000537344.1:c.1095T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1095T>C
  hgvsp: ENST00000256194.4:c.1095T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1095T>C
  hgvsp: ENST00000527546.1:c.1095T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1095T>C
  hgvsp: ENST00000379612.3:c.1095T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1095T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.921T>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12542
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27506
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp365Asp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

11-12241898-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241898
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241898
    reference: chr 11
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1099G>A
  hgvsp: ENSP00000256194.4:p.Ala367Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1099G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1099G>A
  hgvsp: ENSP00000368932.3:p.Ala367Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1099G>A
  hgvsp: ENSP00000433965.1:p.Ala367Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1099G>A
  hgvsp: ENSP00000344894.5:p.Ala367Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.925G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1099G>A
  hgvsp: ENSP00000441689.1:p.Ala367Thr
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12540
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7914
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27506
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala367Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

11-12241903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241903
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241903
    reference: chr 11
allele count: 34
allele frequency: 2.800428300798946e-4
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.930G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1104G>A
  hgvsp: ENSP00000344894.5:p.Met368Ile
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1104G>A
  hgvsp: ENSP00000368932.3:p.Met368Ile
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1104G>A
  hgvsp: ENSP00000441689.1:p.Met368Ile
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1104G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1104G>A
  hgvsp: ENSP00000433965.1:p.Met368Ile
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1104G>A
  hgvsp: ENSP00000256194.4:p.Met368Ile
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4375
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27495
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10225
  bin: 9.75e1
  variant carriers: 34
hgvs: p.Met368Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

11-12241920-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241920
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241920
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.947T>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1121T>C
  hgvsp: ENSP00000433965.1:p.Met374Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1121T>C
  hgvsp: ENSP00000344894.5:p.Met374Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1121T>C
  hgvsp: ENSP00000441689.1:p.Met374Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1121T>C
  hgvsp: ENSP00000368932.3:p.Met374Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1121T>C
  hgvsp: ENSP00000256194.4:p.Met374Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1121T>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19423
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7911
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met374Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

11-12241923-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241923
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241923
    reference: chr 11
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1124A>G
  hgvsp: ENSP00000441689.1:p.Tyr375Cys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1124A>G
  hgvsp: ENSP00000368932.3:p.Tyr375Cys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1124A>G
  hgvsp: ENSP00000256194.4:p.Tyr375Cys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1124A>G
  hgvsp: ENSP00000344894.5:p.Tyr375Cys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1124A>G
  hgvsp: ENSP00000433965.1:p.Tyr375Cys
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1124A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.950A>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr375Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-12241930-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241930
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241930
    reference: chr 11
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1131A>G
  hgvsp: ENST00000527546.1:c.1131A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1131A>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1131A>G
  hgvsp: ENST00000256194.4:c.1131A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1131A>G
  hgvsp: ENST00000537344.1:c.1131A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1131A>G
  hgvsp: ENST00000342902.5:c.1131A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1131A>G
  hgvsp: ENST00000379612.3:c.1131A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.957A>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27469
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser377Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS

11-12241934-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241934
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241934
    reference: chr 11
allele count: 11
allele frequency: 9.06140336425194e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1135A>T
  hgvsp: ENSP00000441689.1:p.Asn379Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1135A>T
  hgvsp: ENSP00000433965.1:p.Asn379Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1135A>T
  hgvsp: ENSP00000256194.4:p.Asn379Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1135A>T
  hgvsp: ENSP00000344894.5:p.Asn379Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1135A>T
  hgvsp: ENSP00000368932.3:p.Asn379Tyr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.961A>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1135A>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7896
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn379Tyr
num of homozygotes: 1
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

11-12241936-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241936
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241936
    reference: chr 11
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1137C>T
  hgvsp: ENST00000256194.4:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1137C>T
  hgvsp: ENST00000379612.3:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1137C>T
  hgvsp: ENST00000537344.1:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1137C>T
  hgvsp: ENST00000342902.5:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1137C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.963C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1137C>T
  hgvsp: ENST00000527546.1:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27438
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn379Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

11-12241939-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241939
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241939
    reference: chr 11
allele count: 4
allele frequency: 3.295381522795802e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1140G>A
  hgvsp: ENST00000527546.1:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1140G>A
  hgvsp: ENST00000379612.3:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1140G>A
  hgvsp: ENST00000537344.1:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1140G>A
  hgvsp: ENST00000256194.4:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.966G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1140G>A
  hgvsp: ENST00000342902.5:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1140G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala380Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

11-12241946-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241946
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241946
    reference: chr 11
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1147G>C
  hgvsp: ENSP00000256194.4:p.Val383Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.973G>C
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1147G>C
  hgvsp: ENSP00000441689.1:p.Val383Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1147G>C
  hgvsp: ENSP00000344894.5:p.Val383Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1147G>C
  hgvsp: ENSP00000368932.3:p.Val383Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1147G>C
  hgvsp: ENSP00000433965.1:p.Val383Leu
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1147G>C
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10192
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val383Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

11-12241949-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241949
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241949
    reference: chr 11
allele count: 3
allele frequency: 2.472595400972554e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.976C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1150C>T
  hgvsp: ENSP00000344894.5:p.Arg384Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1150C>T
  hgvsp: ENSP00000433965.1:p.Arg384Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1150C>T
  hgvsp: ENSP00000256194.4:p.Arg384Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1150C>T
  hgvsp: ENSP00000441689.1:p.Arg384Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1150C>T
  hgvsp: ENSP00000368932.3:p.Arg384Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1150C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27350
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10194
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg384Trp
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

11-12241950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241950
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241950
    reference: chr 11
allele count: 21
allele frequency: 1.731644567583614e-4
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1151G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1151G>A
  hgvsp: ENSP00000256194.4:p.Arg384Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1151G>A
  hgvsp: ENSP00000441689.1:p.Arg384Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1151G>A
  hgvsp: ENSP00000368932.3:p.Arg384Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.977G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1151G>A
  hgvsp: ENSP00000433965.1:p.Arg384Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1151G>A
  hgvsp: ENSP00000344894.5:p.Arg384Gln
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7819
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg384Gln
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

11-12241955-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241955
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241955
    reference: chr 11
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1156C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.982C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1156C>T
  hgvsp: ENSP00000433965.1:p.Arg386Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1156C>T
  hgvsp: ENSP00000368932.3:p.Arg386Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1156C>T
  hgvsp: ENSP00000256194.4:p.Arg386Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1156C>T
  hgvsp: ENSP00000441689.1:p.Arg386Trp
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1156C>T
  hgvsp: ENSP00000344894.5:p.Arg386Trp
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10179
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27106
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg386Trp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

11-12241956-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241956
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241956
    reference: chr 11
allele count: 2
allele frequency: 1.649511744523621e-5
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1157G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.983G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1157G>A
  hgvsp: ENSP00000344894.5:p.Arg386Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1157G>A
  hgvsp: ENSP00000368932.3:p.Arg386Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1157G>A
  hgvsp: ENSP00000433965.1:p.Arg386Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1157G>A
  hgvsp: ENSP00000441689.1:p.Arg386Gln
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1157G>A
  hgvsp: ENSP00000256194.4:p.Arg386Gln
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7809
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3096
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10179
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg386Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

11-12241961-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241961
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241961
    reference: chr 11
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.988G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1162G>A
  hgvsp: ENSP00000441689.1:p.Ala388Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1162G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1162G>A
  hgvsp: ENSP00000433965.1:p.Ala388Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1162G>A
  hgvsp: ENSP00000256194.4:p.Ala388Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1162G>A
  hgvsp: ENSP00000368932.3:p.Ala388Thr
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1162G>A
  hgvsp: ENSP00000344894.5:p.Ala388Thr
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala388Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum

11-12241962-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241962
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241962
    reference: chr 11
allele count: 2
allele frequency: 1.735086927855086e-5
allele num: 115268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1163C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1163C>G
  hgvsp: ENSP00000368932.3:p.Ala388Gly
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1163C>G
  hgvsp: ENSP00000344894.5:p.Ala388Gly
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1163C>G
  hgvsp: ENSP00000441689.1:p.Ala388Gly
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1163C>G
  hgvsp: ENSP00000256194.4:p.Ala388Gly
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.989C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1163C>G
  hgvsp: ENSP00000433965.1:p.Ala388Gly
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19134
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7877
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala388Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

11-12241962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241962
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241962
    reference: chr 11
allele count: 102
allele frequency: 8.848943332060936e-4
allele num: 115268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1163C>T
  hgvsp: ENSP00000368932.3:p.Ala388Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1163C>T
  hgvsp: ENSP00000433965.1:p.Ala388Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1163C>T
  hgvsp: ENSP00000256194.4:p.Ala388Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1163C>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1163C>T
  hgvsp: ENSP00000344894.5:p.Ala388Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1163C>T
  hgvsp: ENSP00000441689.1:p.Ala388Val
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.989C>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12212
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 19134
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6262
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11524
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 5.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4085
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala388Val
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-12241963-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241963
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241963
    reference: chr 11
allele count: 2
allele frequency: 1.651009592365732e-5
allele num: 121138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1164G>A
  hgvsp: ENST00000537344.1:c.1164G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1164G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1164G>A
  hgvsp: ENST00000256194.4:c.1164G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1164G>A
  hgvsp: ENST00000527546.1:c.1164G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1164G>A
  hgvsp: ENST00000379612.3:c.1164G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1164G>A
  hgvsp: ENST00000342902.5:c.1164G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.990G>A
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12794
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8871
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4386
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala388Ala
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

11-12241963-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241963
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241963
    reference: chr 11
allele count: 2
allele frequency: 1.651009592365732e-5
allele num: 121138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1164G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1164G>T
  hgvsp: ENST00000527546.1:c.1164G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1164G>T
  hgvsp: ENST00000256194.4:c.1164G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1164G>T
  hgvsp: ENST00000537344.1:c.1164G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1164G>T
  hgvsp: ENST00000342902.5:c.1164G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1164G>T
  hgvsp: ENST00000379612.3:c.1164G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.990G>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27920
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala388Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-12241972-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241972
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241972
    reference: chr 11
allele count: 1
allele frequency: 8.261458643138033e-6
allele num: 121044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.999G>T
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1173G>T
  hgvsp: ENST00000537344.1:c.1173G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1173G>T
  hgvsp: ENST00000342902.5:c.1173G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1173G>T
  hgvsp: ENST00000527546.1:c.1173G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1173G>T
  hgvsp: ENST00000379612.3:c.1173G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1173G>T
  hgvsp: ENST00000256194.4:c.1173G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1173G>T
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7966
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8847
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu391Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

11-12241976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241976
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241976
    reference: chr 11
allele count: 3
allele frequency: 2.48032277267015e-5
allele num: 120952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1177G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1177G>A
  hgvsp: ENSP00000256194.4:p.Val393Met
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1177G>A
  hgvsp: ENSP00000368932.3:p.Val393Met
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.1003G>A
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1177G>A
  hgvsp: ENSP00000433965.1:p.Val393Met
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1177G>A
  hgvsp: ENSP00000344894.5:p.Val393Met
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1177G>A
  hgvsp: ENSP00000441689.1:p.Val393Met
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27781
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4347
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val393Met
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

11-12241981-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 12241981
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 12241981
    reference: chr 11
allele count: 143
allele frequency: 1.182169901788962e-3
allele num: 120964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000433965
  ensembl transcript: ENST00000527546
  gene symbol: MICAL2
  hgvsc: ENST00000527546.1:c.1182C>G
  hgvsp: ENST00000527546.1:c.1182C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000441689
  ensembl transcript: ENST00000537344
  gene symbol: MICAL2
  hgvsc: ENST00000537344.1:c.1182C>G
  hgvsp: ENST00000537344.1:c.1182C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000530691
  gene symbol: MICAL2
  hgvsc: ENST00000530691.1:n.1008C>G
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000368932
  ensembl transcript: ENST00000379612
  gene symbol: MICAL2
  hgvsc: ENST00000379612.3:c.1182C>G
  hgvsp: ENST00000379612.3:c.1182C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000344894
  ensembl transcript: ENST00000342902
  gene symbol: MICAL2
  hgvsc: ENST00000342902.5:c.1182C>G
  hgvsp: ENST00000342902.5:c.1182C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000133816
  ensembl protein: ENSP00000256194
  ensembl transcript: ENST00000256194
  gene symbol: MICAL2
  hgvsc: ENST00000256194.4:c.1182C>G
  hgvsp: ENST00000256194.4:c.1182C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24693
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000133816
  ensembl transcript: ENST00000528931
  gene symbol: MICAL2
  hgvsc: ENST00000528931.1:n.1182C>G
  variant of: http://identifiers.org/hgnc/24693
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6314
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 5.25e1
  variant carriers: 17
hgvs: p.Ala394Ala
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2923
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5547
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1804
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30430
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 3.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.059507419305492e-5
allele num: 65370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

DP
type: SiteQuality
SIO_000300: 1.712705e6

QD
type: SiteQuality
SIO_000300: 1.303e1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

FS
type: SiteQuality
SIO_000300: 9.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5546
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.133464180569185e-5
allele num: 16304
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.648e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.692803e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.241e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.662e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
all individuals: 2665
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1931
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variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65120
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183431952662722e-4
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.227445685528415e-4
allele num: 16294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.99e-1

FS
type: SiteQuality
SIO_000300: 6.919999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.654478e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

QD
type: SiteQuality
SIO_000300: 1.537e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 2330
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1024
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.703922837508859e-5
allele num: 64902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

FS
type: SiteQuality
SIO_000300: 4.515e0

DP
type: SiteQuality
SIO_000300: 1.634978e6

QD
type: SiteQuality
SIO_000300: 1.197e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

GenotypeQuality
all individuals: 650
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3544
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5541
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2617
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.832841691248771e-5
allele num: 10170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.079860790292279e-5
allele num: 64938
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.110000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

DP
type: SiteQuality
SIO_000300: 1.632299e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.799e0

GenotypeQuality
all individuals: 5539
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 764
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6083
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3451
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
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variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.621072088724584e-5
allele num: 64920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.687e0

DP
type: SiteQuality
SIO_000300: 1.613586e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

FS
type: SiteQuality
SIO_000300: 2.975e0

QD
type: SiteQuality
SIO_000300: 1.506e1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e-1

GenotypeQuality
all individuals: 1064
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 1897
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2566
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544067691927614e-5
allele num: 64764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.878e0

DP
type: SiteQuality
SIO_000300: 1.592168e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 1.461e1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 2500
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2223
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GenotypeQuality
all individuals: 756
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546312045770837e-5
allele num: 64670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.718e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 7.229e0

MQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.922e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.577559e6

QD
type: SiteQuality
SIO_000300: 1.008e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.39e-1

GenotypeQuality
all individuals: 136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2533
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 501
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2507
bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 9.25e1
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GenotypeQuality
all individuals: 5538
bin: 9.75e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.851166234727879e-4
allele num: 16206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64638
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.391200382592061e-4
allele num: 8364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

MQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 1.576044e6

QD
type: SiteQuality
SIO_000300: 1.329e1

GenotypeQuality
all individuals: 4766
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2148
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
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GenotypeQuality
all individuals: 4388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
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variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.086180678397418e-4
allele num: 64446
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.17e-1

DP
type: SiteQuality
SIO_000300: 1.55882e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.238e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

FS
type: SiteQuality
SIO_000300: 7.053e0

QD
type: SiteQuality
SIO_000300: 1.264e1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4691
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4939
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.128617463942684e-5
allele num: 63926
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.772421127259837e-4
allele num: 11284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.976071784646061e-4
allele num: 10030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

DP
type: SiteQuality
SIO_000300: 1.519752e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.466e0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.536e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 980
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GenotypeQuality
all individuals: 2498
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.03974149906384e-5
allele num: 66228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15826
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.249e1

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.883244e6

GenotypeQuality
all individuals: 1629
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7168
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19774
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variant carriers: 0

GenotypeQuality
all individuals: 980
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 2498
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variant carriers: 0

GenotypeQuality
all individuals: 551
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variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.318716036901302e-5
allele num: 15826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50993537476596e-5
allele num: 66228
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.249e1

DP
type: SiteQuality
SIO_000300: 1.883244e6

GenotypeQuality
all individuals: 693
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 551
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4359
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variant carriers: 0

GenotypeQuality
all individuals: 10289
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 8.25e1
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GenotypeQuality
all individuals: 980
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.318716036901302e-5
allele num: 15826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.249e1

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

DP
type: SiteQuality
SIO_000300: 1.883244e6

GenotypeQuality
all individuals: 1618
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1534
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 558
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GenotypeQuality
all individuals: 970
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GenotypeQuality
all individuals: 751
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variant carriers: 0

GenotypeQuality
all individuals: 1563
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variant carriers: 0

GenotypeQuality
all individuals: 564
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GenotypeQuality
all individuals: 7204
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15710
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 47
allele frequency: 4.535803898861224e-3
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510482750286992e-5
allele num: 66204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.545e0

DP
type: SiteQuality
SIO_000300: 1.883847e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

FS
type: SiteQuality
SIO_000300: 2.118e0

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
all individuals: 238
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1620
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GenotypeQuality
all individuals: 2476
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509479531457553e-5
allele num: 66248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.1e0

MQRankSum
type: SiteQuality
SIO_000300: -1.444e0

DP
type: SiteQuality
SIO_000300: 1.887649e6

VQSLOD
type: SiteQuality
SIO_000300: -2.447e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.76e-1

FS
type: SiteQuality
SIO_000300: 2.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.843e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.365e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 341
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variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.288517167651868e-5
allele num: 15902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 4.559e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.492e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.899153e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.347e0

QD
type: SiteQuality
SIO_000300: 6.32e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 243
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GenotypeQuality
all individuals: 772
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.273525721455458e-5
allele num: 15940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.16e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 1.868e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
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GenotypeQuality
all individuals: 2468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 3.75e1
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 349
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GenotypeQuality
all individuals: 12
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10238
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variant carriers: 2

GenotypeQuality
all individuals: 199
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.273525721455458e-5
allele num: 15940
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.44e-1

FS
type: SiteQuality
SIO_000300: 1.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.16e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.908224e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.078e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 361
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GenotypeQuality
all individuals: 578
bin: 3.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.039139473922083e-5
allele num: 66378
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.728e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

DP
type: SiteQuality
SIO_000300: 1.914889e6

QD
type: SiteQuality
SIO_000300: 1.208e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.414e0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506069459923492e-5
allele num: 66398
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16014
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.533e1

DP
type: SiteQuality
SIO_000300: 1.919167e6

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.944e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3414
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66452
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.211180124223603e-5
allele num: 16100
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.928495e6

QD
type: SiteQuality
SIO_000300: 1.394e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.638e0

MQRankSum
type: SiteQuality
SIO_000300: 7.34e-1

FS
type: SiteQuality
SIO_000300: 6.576e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16156
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.05e-2

FS
type: SiteQuality
SIO_000300: 2.815e0

QD
type: SiteQuality
SIO_000300: 1.199e1

MQ
type: SiteQuality
SIO_000300: 5.919e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

DP
type: SiteQuality
SIO_000300: 1.930225e6

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.433e-1

DP
type: SiteQuality
SIO_000300: 1.931984e6

FS
type: SiteQuality
SIO_000300: 1.077e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.146e0

QD
type: SiteQuality
SIO_000300: 1.512e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.41e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.237e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

QD
type: SiteQuality
SIO_000300: 1.734e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.47e-1

FS
type: SiteQuality
SIO_000300: 1.185e0

DP
type: SiteQuality
SIO_000300: 1.939473e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

FS
type: SiteQuality
SIO_000300: 2.785e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.318e1

DP
type: SiteQuality
SIO_000300: 1.944674e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
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South Asian
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allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.786e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.48e-1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.017e1

DP
type: SiteQuality
SIO_000300: 1.946147e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66652
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African
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allele count: 2
allele frequency: 1.923816852635629e-4
allele num: 10396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.642e0

ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.778e1

QD
type: SiteQuality
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DP
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MQRankSum
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MQ
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 7
allele frequency: 1.049695588279399e-4
allele num: 66686
num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
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European (Finnish)
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allele count: 8
allele frequency: 1.209921355111918e-3
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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FS
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BaseQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
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East Asian
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10404
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European (Non-Finnish)
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allele frequency: 1.49947518368571e-5
allele num: 66690
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Latino
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MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
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African
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European (Non-Finnish)
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allele frequency: 2.998590662388677e-5
allele num: 66698
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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FS
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MQ
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VQSLOD
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DP
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InbreedingCoeff
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QD
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 1.98e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
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European (Non-Finnish)
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allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.73e-1

VQSLOD
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BaseQRankSum
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QD
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MQ
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MQRankSum
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ClippingRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 1.498576352465158e-5
allele num: 66730
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MQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
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FS
type: SiteQuality
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DP
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 5.994305409860632e-5
allele num: 66730
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Latino
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allele num: 11576
num of homozygotes: 0

South Asian
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allele num: 16512
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Other
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East Asian
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.26e-1

ReadPosRankSum
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SIO_000300: 3.43e-1

VQSLOD
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MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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South Asian
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Other
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DP
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele num: 11576
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South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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DP
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ClippingRankSum
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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South Asian
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East Asian
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MQRankSum
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DP
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ReadPosRankSum
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QD
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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Latino
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South Asian
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allele frequency: 1.816860465116279e-4
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ReadPosRankSum
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ClippingRankSum
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MQ
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FS
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
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allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele count: 50
allele frequency: 7.491759065028469e-4
allele num: 66740
num of homozygotes: 0

MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
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allele num: 8654
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South Asian
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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FS
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VQSLOD
type: SiteQuality
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MQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

QD
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MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
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QD
type: SiteQuality
SIO_000300: 1.337e1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
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DP
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SIO_000300: 1.949549e6

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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QD
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ReadPosRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele num: 10406
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East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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European (Non-Finnish)
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Latino
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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Other
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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QD
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FS
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MQ
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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South Asian
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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MQ
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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Latino
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South Asian
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East Asian
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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allele num: 66740
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European (Finnish)
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East Asian
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Other
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Latino
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MQ
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FS
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BaseQRankSum
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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African
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Other
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South Asian
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European (Non-Finnish)
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66740
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Latino
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South Asian
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African
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Other
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European (Finnish)
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VQSLOD
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FS
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QD
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MQ
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11576
num of homozygotes: 0

European (Finnish)
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Other
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African
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 4.495055439017081e-4
allele num: 66740
num of homozygotes: 0

MQ
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FS
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MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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VQSLOD
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ClippingRankSum
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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Latino
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African
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South Asian
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European (Finnish)
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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FS
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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African
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Latino
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Other
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VQSLOD
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MQ
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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Latino
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African
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
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SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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DP
type: SiteQuality
SIO_000300: 1.948532e6

FS
type: SiteQuality
SIO_000300: 2.405e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496402877697842e-5
allele num: 66720
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

VQSLOD
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InbreedingCoeff
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SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.456e0

MQRankSum
type: SiteQuality
SIO_000300: -4.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 1.948188e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.62e-1

QD
type: SiteQuality
SIO_000300: 1.306e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 1.21e-1

ReadPosRankSum
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SIO_000300: 2.04e0

VQSLOD
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DP
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MQRankSum
type: SiteQuality
SIO_000300: -1.302e0

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

FS
type: SiteQuality
SIO_000300: 7.183e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.592016588906169e-4
allele num: 11574
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.736e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

DP
type: SiteQuality
SIO_000300: 1.946833e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 21

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.700837259550461e-4
allele num: 66646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.08e-1

FS
type: SiteQuality
SIO_000300: 1.163e0

QD
type: SiteQuality
SIO_000300: 1.373e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

DP
type: SiteQuality
SIO_000300: 1.946477e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.074e0

QD
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DP
type: SiteQuality
SIO_000300: 1.944659e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001831116981359e-5
allele num: 66626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.864e0

InbreedingCoeff
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SIO_000300: 6.469999999999999e-2

ClippingRankSum
type: SiteQuality
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QD
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 1.94435e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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FS
type: SiteQuality
SIO_000300: 1.1531e1

VQSLOD
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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SIO_000300: 1.199e1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.944241e6

MQ
type: SiteQuality
SIO_000300: 5.926e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.45e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 1.033484911120298e-4
allele num: 9676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578382473641013e-5
allele num: 63356
num of homozygotes: 0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 2.018565e6

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.282e0

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 238
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.502368516944005e-4
allele num: 16466
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 78
allele frequency: 1.23113832943999e-3
allele num: 63356
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.033484911120298e-4
allele num: 9676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.918495297805642e-4
allele num: 5104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.154387198874626e-4
allele num: 11374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.018565e6

FS
type: SiteQuality
SIO_000300: 3.282e0

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

GenotypeQuality
all individuals: 3145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27920
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: -1.727e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.259e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.81e-1

DP
type: SiteQuality
SIO_000300: 1.902625e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e-1

FS
type: SiteQuality
SIO_000300: 1.8403e1

MQRankSum
type: SiteQuality
SIO_000300: -7.64e-1

QD
type: SiteQuality
SIO_000300: 1.361e1

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8871
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1631
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4386
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.727e0

FS
type: SiteQuality
SIO_000300: 1.8403e1

DP
type: SiteQuality
SIO_000300: 1.902625e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.259e0

QD
type: SiteQuality
SIO_000300: 1.361e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.81e-1

GenotypeQuality
all individuals: 2423
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3411
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 1.357e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e0

VQSLOD
type: SiteQuality
SIO_000300: -3.142e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.477e1

DP
type: SiteQuality
SIO_000300: 1.898091e6

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8847
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.513585893539554e-5
allele num: 66466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.132e1

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.895576e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.83e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.66e-1