5-180219513-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219513
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219513
    reference: chr 5
allele count: 1
allele frequency: 8.542919628212137e-6
allele num: 117056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.459C>T
  hgvsp: ENST00000333055.3:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.459C>T
  hgvsp: ENST00000446023.2:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.459C>T
  hgvsp: ENST00000506889.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.459C>T
  hgvsp: ENST00000427865.2:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.459C>T
  hgvsp: ENST00000393340.3:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.459C>T
  hgvsp: ENST00000307826.4:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.459C>T
  hgvsp: ENST00000504671.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala153Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ

5-180219516-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219516
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219516
    reference: chr 5
allele count: 15
allele frequency: 1.281613123718387e-4
allele num: 117040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.456C>T
  hgvsp: ENST00000307826.4:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.456C>T
  hgvsp: ENST00000393340.3:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.456C>T
  hgvsp: ENST00000427865.2:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.456C>T
  hgvsp: ENST00000504671.1:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.456C>T
  hgvsp: ENST00000446023.2:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.456C>T
  hgvsp: ENST00000506889.1:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.456C>T
  hgvsp: ENST00000333055.3:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 16418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile152Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

5-180219519-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219519
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219519
    reference: chr 5
allele count: 1
allele frequency: 8.54481756814492e-6
allele num: 117030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.453C>T
  hgvsp: ENST00000333055.3:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.453C>T
  hgvsp: ENST00000393340.3:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.453C>T
  hgvsp: ENST00000506889.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.453C>T
  hgvsp: ENST00000427865.2:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.453C>T
  hgvsp: ENST00000504671.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.453C>T
  hgvsp: ENST00000446023.2:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.453C>T
  hgvsp: ENST00000307826.4:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6994
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala151Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

5-180219525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219525
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219525
    reference: chr 5
allele count: 112
allele frequency: 9.568887445961417e-4
allele num: 117046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.447C>T
  hgvsp: ENST00000393340.3:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.447C>T
  hgvsp: ENST00000427865.2:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.447C>T
  hgvsp: ENST00000506889.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.447C>T
  hgvsp: ENST00000333055.3:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.447C>T
  hgvsp: ENST00000504671.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.447C>T
  hgvsp: ENST00000446023.2:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.447C>T
  hgvsp: ENST00000307826.4:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 30551
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala149Ala
num of homozygotes: 1
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

5-180219525-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219525
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219525
    reference: chr 5
allele count: 1
allele frequency: 8.543649505322693e-6
allele num: 117046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.447C>A
  hgvsp: ENST00000506889.1:c.447C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.447C>A
  hgvsp: ENST00000446023.2:c.447C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.447C>A
  hgvsp: ENST00000427865.2:c.447C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.447C>A
  hgvsp: ENST00000393340.3:c.447C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.447C>A
  hgvsp: ENST00000504671.1:c.447C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.447C>A
  hgvsp: ENST00000333055.3:c.447C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.447C>A
  hgvsp: ENST00000307826.4:c.447C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47068
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala149Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

5-180219528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219528
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219528
    reference: chr 5
allele count: 96
allele frequency: 8.205268466127626e-4
allele num: 116998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.444G>A
  hgvsp: ENST00000427865.2:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.444G>A
  hgvsp: ENST00000307826.4:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.444G>A
  hgvsp: ENST00000333055.3:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.444G>A
  hgvsp: ENST00000393340.3:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.444G>A
  hgvsp: ENST00000446023.2:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.444G>A
  hgvsp: ENST00000504671.1:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.444G>A
  hgvsp: ENST00000506889.1:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9081
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 16373
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 30560
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr148Thr
num of homozygotes: 1
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

5-180219531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219531
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219531
    reference: chr 5
allele count: 1
allele frequency: 8.544087491455912e-6
allele num: 117040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.441G>A
  hgvsp: ENST00000504671.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.441G>A
  hgvsp: ENST00000333055.3:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.441G>A
  hgvsp: ENST00000307826.4:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.441G>A
  hgvsp: ENST00000427865.2:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.441G>A
  hgvsp: ENST00000446023.2:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.441G>A
  hgvsp: ENST00000393340.3:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.441G>A
  hgvsp: ENST00000506889.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu147Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

5-180219534-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219534
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219534
    reference: chr 5
allele count: 1
allele frequency: 8.544671542825894e-6
allele num: 117032
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.438G>C
  hgvsp: ENSP00000404718.2:p.Glu146Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.438G>C
  hgvsp: ENSP00000377010.3:p.Glu146Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.438G>C
  hgvsp: ENSP00000424891.1:p.Glu146Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.438G>C
  hgvsp: ENSP00000332073.3:p.Glu146Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.438G>C
  hgvsp: ENSP00000425988.1:p.Glu146Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.438G>C
  hgvsp: ENSP00000402838.2:p.Glu146Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.438G>C
  hgvsp: ENSP00000311888.4:p.Glu146Asp
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30574
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu146Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

5-180219537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219537
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219537
    reference: chr 5
allele count: 5
allele frequency: 4.273723438808828e-5
allele num: 116994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.435C>T
  hgvsp: ENST00000504671.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.435C>T
  hgvsp: ENST00000427865.2:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.435C>T
  hgvsp: ENST00000393340.3:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.435C>T
  hgvsp: ENST00000446023.2:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.435C>T
  hgvsp: ENST00000307826.4:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.435C>T
  hgvsp: ENST00000506889.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.435C>T
  hgvsp: ENST00000333055.3:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6954
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His145His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

5-180219546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219546
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219546
    reference: chr 5
allele count: 50
allele frequency: 4.277452691373234e-4
allele num: 116892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.426C>T
  hgvsp: ENST00000393340.3:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.426C>T
  hgvsp: ENST00000427865.2:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.426C>T
  hgvsp: ENST00000504671.1:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.426C>T
  hgvsp: ENST00000446023.2:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.426C>T
  hgvsp: ENST00000307826.4:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.426C>T
  hgvsp: ENST00000506889.1:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.426C>T
  hgvsp: ENST00000333055.3:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16405
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9031
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 30569
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47099
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp142Asp
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

5-180219550-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219550
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219550
    reference: chr 5
allele count: 1
allele frequency: 8.568539749455898e-6
allele num: 116706
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.422A>G
  hgvsp: ENSP00000402838.2:p.Gln141Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.422A>G
  hgvsp: ENSP00000311888.4:p.Gln141Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.422A>G
  hgvsp: ENSP00000424891.1:p.Gln141Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.422A>G
  hgvsp: ENSP00000425988.1:p.Gln141Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.422A>G
  hgvsp: ENSP00000404718.2:p.Gln141Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.422A>G
  hgvsp: ENSP00000377010.3:p.Gln141Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.422A>G
  hgvsp: ENSP00000332073.3:p.Gln141Arg
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln141Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

5-180219557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219557
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219557
    reference: chr 5
allele count: 1
allele frequency: 8.582217645039478e-6
allele num: 116520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.415G>A
  hgvsp: ENSP00000424891.1:p.Val139Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.415G>A
  hgvsp: ENSP00000332073.3:p.Val139Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.415G>A
  hgvsp: ENSP00000425988.1:p.Val139Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.415G>A
  hgvsp: ENSP00000404718.2:p.Val139Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.415G>A
  hgvsp: ENSP00000402838.2:p.Val139Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.415G>A
  hgvsp: ENSP00000377010.3:p.Val139Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.415G>A
  hgvsp: ENSP00000311888.4:p.Val139Ile
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val139Ile
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

5-180219558-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219558
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219558
    reference: chr 5
allele count: 1
allele frequency: 8.587819037477242e-6
allele num: 116444
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.414C>T
  hgvsp: ENST00000307826.4:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.414C>T
  hgvsp: ENST00000506889.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.414C>T
  hgvsp: ENST00000504671.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.414C>T
  hgvsp: ENST00000446023.2:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.414C>T
  hgvsp: ENST00000427865.2:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.414C>T
  hgvsp: ENST00000333055.3:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.414C>T
  hgvsp: ENST00000393340.3:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6863
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile138Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

5-180219579-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219579
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219579
    reference: chr 5
allele count: 2
allele frequency: 1.74076524039968e-5
allele num: 114892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.393G>A
  hgvsp: ENST00000506889.1:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.393G>A
  hgvsp: ENST00000333055.3:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.393G>A
  hgvsp: ENST00000393340.3:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.393G>A
  hgvsp: ENST00000504671.1:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.393G>A
  hgvsp: ENST00000446023.2:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.393G>A
  hgvsp: ENST00000307826.4:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.393G>A
  hgvsp: ENST00000427865.2:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29906
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3660
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser131Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

5-180219623-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219623
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219623
    reference: chr 5
allele count: 1
allele frequency: 9.508595770576601e-6
allele num: 105168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.349A>T
  hgvsp: ENSP00000402838.2:p.Thr117Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.349A>T
  hgvsp: ENSP00000425988.1:p.Thr117Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.349A>T
  hgvsp: ENSP00000332073.3:p.Thr117Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.349A>T
  hgvsp: ENSP00000377010.3:p.Thr117Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.349A>T
  hgvsp: ENSP00000424891.1:p.Thr117Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.349A>T
  hgvsp: ENSP00000404718.2:p.Thr117Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.349A>T
  hgvsp: ENSP00000311888.4:p.Thr117Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.349A>T
  hgvsp: ENSP00000424382.1:p.Thr117Ser
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr117Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

5-180219639-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219639
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219639
    reference: chr 5
allele count: 2
allele frequency: 2.097007570197329e-5
allele num: 95374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.333C>T
  hgvsp: ENST00000333055.3:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.333C>T
  hgvsp: ENST00000506269.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.333C>T
  hgvsp: ENST00000512695.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.333C>T
  hgvsp: ENST00000427865.2:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.333C>T
  hgvsp: ENST00000504671.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.333C>T
  hgvsp: ENST00000307826.4:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.333C>T
  hgvsp: ENST00000514283.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.333C>T
  hgvsp: ENST00000446023.2:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.333C>T
  hgvsp: ENST00000506889.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.333C>T
  hgvsp: ENST00000393340.3:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28135
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile111Ile
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-180219641-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219641
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219641
    reference: chr 5
allele count: 1
allele frequency: 1.047954393024816e-5
allele num: 95424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.331A>G
  hgvsp: ENSP00000311888.4:p.Ile111Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.331A>G
  hgvsp: ENSP00000402838.2:p.Ile111Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.331A>G
  hgvsp: ENSP00000377010.3:p.Ile111Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.331A>G
  hgvsp: ENSP00000424891.1:p.Ile111Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.331A>G
  hgvsp: ENSP00000404718.2:p.Ile111Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.331A>G
  hgvsp: ENSP00000332073.3:p.Ile111Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.331A>G
  hgvsp: ENSP00000422906.1:p.Ile111Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.331A>G
  hgvsp: ENSP00000424382.1:p.Ile111Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.331A>G
  hgvsp: ENSP00000425988.1:p.Ile111Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.331A>G
  hgvsp: ENSP00000427116.1:p.Ile111Val
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile111Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

5-180219642-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219642
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219642
    reference: chr 5
allele count: 1
allele frequency: 1.054852320675105e-5
allele num: 94800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.330C>T
  hgvsp: ENST00000506889.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.330C>T
  hgvsp: ENST00000427865.2:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.330C>T
  hgvsp: ENST00000307826.4:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.330C>T
  hgvsp: ENST00000512695.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.330C>T
  hgvsp: ENST00000504671.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.330C>T
  hgvsp: ENST00000446023.2:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.330C>T
  hgvsp: ENST00000393340.3:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.330C>T
  hgvsp: ENST00000514283.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.330C>T
  hgvsp: ENST00000506269.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.330C>T
  hgvsp: ENST00000333055.3:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11004
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val110Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

5-180219648-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219648
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219648
    reference: chr 5
allele count: 121
allele frequency: 1.334362593736215e-3
allele num: 90680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.324C>T
  hgvsp: ENST00000506269.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.324C>T
  hgvsp: ENST00000393340.3:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.324C>T
  hgvsp: ENST00000514283.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.324C>T
  hgvsp: ENST00000427865.2:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.324C>T
  hgvsp: ENST00000333055.3:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.324C>T
  hgvsp: ENST00000512695.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.324C>T
  hgvsp: ENST00000504671.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.324C>T
  hgvsp: ENST00000446023.2:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.324C>T
  hgvsp: ENST00000307826.4:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.324C>T
  hgvsp: ENST00000506889.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15842
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13112
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 2.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 11973
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile108Ile
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

5-180219653-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219653
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219653
    reference: chr 5
allele count: 1
allele frequency: 1.18999452602518e-5
allele num: 84034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.319C>G
  hgvsp: ENSP00000311888.4:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.319C>G
  hgvsp: ENSP00000422906.1:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.319C>G
  hgvsp: ENSP00000404718.2:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.319C>G
  hgvsp: ENSP00000425988.1:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.319C>G
  hgvsp: ENSP00000377010.3:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.319C>G
  hgvsp: ENSP00000427116.1:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.319C>G
  hgvsp: ENSP00000402838.2:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.319C>G
  hgvsp: ENSP00000332073.3:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.319C>G
  hgvsp: ENSP00000424891.1:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.319C>G
  hgvsp: ENSP00000424382.1:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro107Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-180219660-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219660
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219660
    reference: chr 5
allele count: 2
allele frequency: 2.727843094465206e-5
allele num: 73318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.312G>T
  hgvsp: ENST00000427865.2:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.312G>T
  hgvsp: ENST00000514438.1:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.312G>T
  hgvsp: ENST00000333055.3:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.312G>T
  hgvsp: ENST00000504671.1:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.312G>T
  hgvsp: ENST00000393340.3:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.312G>T
  hgvsp: ENST00000446023.2:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.312G>T
  hgvsp: ENST00000307826.4:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.312G>T
  hgvsp: ENST00000506269.1:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.312G>T
  hgvsp: ENST00000512695.1:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.312G>T
  hgvsp: ENST00000514283.1:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.312G>T
  hgvsp: ENST00000506889.1:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala104Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

5-180219660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219660
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219660
    reference: chr 5
allele count: 1
allele frequency: 1.363921547232603e-5
allele num: 73318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.312G>A
  hgvsp: ENST00000307826.4:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.312G>A
  hgvsp: ENST00000393340.3:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.312G>A
  hgvsp: ENST00000446023.2:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.312G>A
  hgvsp: ENST00000506889.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.312G>A
  hgvsp: ENST00000514283.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.312G>A
  hgvsp: ENST00000512695.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.312G>A
  hgvsp: ENST00000333055.3:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.312G>A
  hgvsp: ENST00000427865.2:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.312G>A
  hgvsp: ENST00000504671.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.312G>A
  hgvsp: ENST00000514438.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.312G>A
  hgvsp: ENST00000506269.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala104Ala
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/5-180219662-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219662
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219662
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 71478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.310G>T
  hgvsp: ENSP00000422906.1:p.Ala104Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.310G>T
  hgvsp: ENSP00000424382.1:p.Ala104Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.310G>T
  hgvsp: ENSP00000332073.3:p.Ala104Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.310G>T
  hgvsp: ENSP00000311888.4:p.Ala104Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.310G>T
  hgvsp: ENSP00000404718.2:p.Ala104Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.310G>T
  hgvsp: ENSP00000427116.1:p.Ala104Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.310G>T
  hgvsp: ENSP00000424891.1:p.Ala104Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.310G>T
  hgvsp: ENST00000502678.1:c.310G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.310G>T
  hgvsp: ENSP00000402838.2:p.Ala104Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.310G>T
  hgvsp: ENSP00000377010.3:p.Ala104Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.310G>T
  hgvsp: ENSP00000425988.1:p.Ala104Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.310G>T
  hgvsp: ENSP00000421738.1:p.Ala104Ser
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18584
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala104Ser
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-180219666-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219666
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219666
    reference: chr 5
allele count: 11
allele frequency: 1.639002294603212e-4
allele num: 67114
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.306G>T
  hgvsp: ENST00000446023.2:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.306G>T
  hgvsp: ENST00000514438.1:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.306G>T
  hgvsp: ENST00000502678.1:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.306G>T
  hgvsp: ENST00000514283.1:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.306G>T
  hgvsp: ENST00000506889.1:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.306G>T
  hgvsp: ENST00000393340.3:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.306G>T
  hgvsp: ENST00000427865.2:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.306G>T
  hgvsp: ENST00000506269.1:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.306G>T
  hgvsp: ENST00000307826.4:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.306G>T
  hgvsp: ENST00000512695.1:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.306G>T
  hgvsp: ENST00000333055.3:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.306G>T
  hgvsp: ENST00000504671.1:c.306G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19940
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19829
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala102Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

5-180219666-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219666
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219666
    reference: chr 5
allele count: 1
allele frequency: 1.49000208600292e-5
allele num: 67114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.306G>A
  hgvsp: ENST00000504671.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.306G>A
  hgvsp: ENST00000514283.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.306G>A
  hgvsp: ENST00000307826.4:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.306G>A
  hgvsp: ENST00000427865.2:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.306G>A
  hgvsp: ENST00000506889.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.306G>A
  hgvsp: ENST00000393340.3:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.306G>A
  hgvsp: ENST00000502678.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.306G>A
  hgvsp: ENST00000514438.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.306G>A
  hgvsp: ENST00000512695.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.306G>A
  hgvsp: ENST00000506269.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.306G>A
  hgvsp: ENST00000333055.3:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.306G>A
  hgvsp: ENST00000446023.2:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19829
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala102Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

5-180219667-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219667
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219667
    reference: chr 5
allele count: 1
allele frequency: 1.503804625703029e-5
allele num: 66498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.305C>T
  hgvsp: ENSP00000427116.1:p.Ala102Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.305C>T
  hgvsp: ENSP00000332073.3:p.Ala102Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.305C>T
  hgvsp: ENSP00000422588.1:p.Ala102Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.305C>T
  hgvsp: ENSP00000404718.2:p.Ala102Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.305C>T
  hgvsp: ENSP00000421738.1:p.Ala102Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.305C>T
  hgvsp: ENSP00000425988.1:p.Ala102Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.305C>T
  hgvsp: ENSP00000424891.1:p.Ala102Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.305C>T
  hgvsp: ENSP00000377010.3:p.Ala102Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.305C>T
  hgvsp: ENSP00000424382.1:p.Ala102Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.305C>T
  hgvsp: ENSP00000402838.2:p.Ala102Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.305C>T
  hgvsp: ENSP00000311888.4:p.Ala102Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.305C>T
  hgvsp: ENSP00000422906.1:p.Ala102Val
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala102Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-180219669-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219669
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219669
    reference: chr 5
allele count: 3
allele frequency: 4.747736912071912e-5
allele num: 63188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.303C>T
  hgvsp: ENST00000307826.4:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.303C>T
  hgvsp: ENST00000502678.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.303C>T
  hgvsp: ENST00000504671.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.303C>T
  hgvsp: ENST00000393340.3:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.303C>T
  hgvsp: ENST00000506269.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.303C>T
  hgvsp: ENST00000514283.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.303C>T
  hgvsp: ENST00000333055.3:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.303C>T
  hgvsp: ENST00000446023.2:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.303C>T
  hgvsp: ENST00000427865.2:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.303C>T
  hgvsp: ENST00000512695.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.303C>T
  hgvsp: ENST00000506889.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.303C>T
  hgvsp: ENST00000514438.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20079
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro101Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

5-180219672-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219672
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219672
    reference: chr 5
allele count: 1
allele frequency: 1.600102406554019e-5
allele num: 62496
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.300C>G
  hgvsp: ENST00000506889.1:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.300C>G
  hgvsp: ENST00000393340.3:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.300C>G
  hgvsp: ENST00000446023.2:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.300C>G
  hgvsp: ENST00000333055.3:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.300C>G
  hgvsp: ENST00000502678.1:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.300C>G
  hgvsp: ENST00000427865.2:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.300C>G
  hgvsp: ENST00000307826.4:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.300C>G
  hgvsp: ENST00000506269.1:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.300C>G
  hgvsp: ENST00000512695.1:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.300C>G
  hgvsp: ENST00000514283.1:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.300C>G
  hgvsp: ENST00000504671.1:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.300C>G
  hgvsp: ENST00000514438.1:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr100Thr
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

5-180219673-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219673
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219673
    reference: chr 5
allele count: 1
allele frequency: 1.624220374220374e-5
allele num: 61568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.299C>T
  hgvsp: ENSP00000421738.1:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.299C>T
  hgvsp: ENSP00000311888.4:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.299C>T
  hgvsp: ENSP00000377010.3:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.299C>T
  hgvsp: ENSP00000422588.1:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.299C>T
  hgvsp: ENSP00000424382.1:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.299C>T
  hgvsp: ENSP00000404718.2:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.299C>T
  hgvsp: ENSP00000422906.1:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.299C>T
  hgvsp: ENSP00000427116.1:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.299C>T
  hgvsp: ENSP00000402838.2:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.299C>T
  hgvsp: ENSP00000424891.1:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.299C>T
  hgvsp: ENSP00000332073.3:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.299C>T
  hgvsp: ENSP00000425988.1:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20303
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr100Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

5-180219677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219677
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219677
    reference: chr 5
allele count: 1
allele frequency: 1.84202770409667e-5
allele num: 54288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.295G>A
  hgvsp: ENSP00000421738.1:p.Val99Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.295G>A
  hgvsp: ENSP00000402838.2:p.Val99Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.295G>A
  hgvsp: ENSP00000311888.4:p.Val99Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.295G>A
  hgvsp: ENSP00000422588.1:p.Val99Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.295G>A
  hgvsp: ENSP00000404718.2:p.Val99Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.295G>A
  hgvsp: ENSP00000377010.3:p.Val99Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.295G>A
  hgvsp: ENSP00000422906.1:p.Val99Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.295G>A
  hgvsp: ENSP00000427116.1:p.Val99Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.295G>A
  hgvsp: ENSP00000424891.1:p.Val99Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.295G>A
  hgvsp: ENSP00000425988.1:p.Val99Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.295G>A
  hgvsp: ENSP00000424382.1:p.Val99Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.295G>A
  hgvsp: ENSP00000332073.3:p.Val99Met
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20302
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val99Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS

5-180219684-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219684
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219684
    reference: chr 5
allele count: 2
allele frequency: 4.396377385034731e-5
allele num: 45492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.288T>C
  hgvsp: ENST00000514283.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.288T>C
  hgvsp: ENST00000427865.2:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.288T>C
  hgvsp: ENST00000307826.4:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.288T>C
  hgvsp: ENST00000506889.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.288T>C
  hgvsp: ENST00000446023.2:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.288T>C
  hgvsp: ENST00000393340.3:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.288T>C
  hgvsp: ENST00000512695.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.288T>C
  hgvsp: ENST00000504671.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.288T>C
  hgvsp: ENST00000333055.3:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.288T>C
  hgvsp: ENST00000502678.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.288T>C
  hgvsp: ENST00000506269.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.288T>C
  hgvsp: ENST00000514438.1:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18446
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg96Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

5-180219687-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219687
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219687
    reference: chr 5
allele count: 4
allele frequency: 1.013222554334059e-4
allele num: 39478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.285G>A
  hgvsp: ENST00000393340.3:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.285G>A
  hgvsp: ENST00000307826.4:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.285G>A
  hgvsp: ENST00000514438.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.285G>A
  hgvsp: ENST00000504671.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.285G>A
  hgvsp: ENST00000427865.2:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.285G>A
  hgvsp: ENST00000502678.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.285G>A
  hgvsp: ENST00000446023.2:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.285G>A
  hgvsp: ENST00000506889.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.285G>A
  hgvsp: ENST00000333055.3:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.285G>A
  hgvsp: ENST00000514283.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.285G>A
  hgvsp: ENST00000506269.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.285G>A
  hgvsp: ENST00000513431.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.285G>A
  hgvsp: ENST00000512695.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16786
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12950
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro95Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

5-180219696-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219696
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219696
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 28676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.276C>T
  hgvsp: ENST00000427865.2:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.276C>T
  hgvsp: ENST00000506889.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.276C>T
  hgvsp: ENST00000506269.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.276C>T
  hgvsp: ENST00000513431.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.276C>T
  hgvsp: ENST00000446023.2:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.276C>T
  hgvsp: ENST00000502678.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.276C>T
  hgvsp: ENST00000307826.4:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.276C>T
  hgvsp: ENST00000514438.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.276C>T
  hgvsp: ENST00000504671.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.276C>T
  hgvsp: ENST00000393340.3:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.276C>T
  hgvsp: ENST00000512695.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.276C>T
  hgvsp: ENST00000333055.3:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.276C>T
  hgvsp: ENST00000514283.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25313
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro92Pro
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

5-180219701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219701
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219701
    reference: chr 5
allele count: 29
allele frequency: 1.400830837600232e-3
allele num: 20702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.271C>T
  hgvsp: ENSP00000377010.3:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.271C>T
  hgvsp: ENSP00000427116.1:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.271C>T
  hgvsp: ENSP00000404718.2:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.271C>T
  hgvsp: ENSP00000424382.1:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.271C>T
  hgvsp: ENSP00000402838.2:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.271C>T
  hgvsp: ENSP00000424891.1:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.271C>T
  hgvsp: ENSP00000422906.1:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.271C>T
  hgvsp: ENSP00000421738.1:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.271C>T
  hgvsp: ENSP00000311888.4:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.271C>T
  hgvsp: ENSP00000332073.3:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.271C>T
  hgvsp: ENSP00000422588.1:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.271C>T
  hgvsp: ENSP00000425988.1:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.271C>T
  hgvsp: ENSP00000423401.1:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9783
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21001
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24977
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro91Ser
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

5-180219708-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219708
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219708
    reference: chr 5
allele count: 2
allele frequency: 1.072501072501073e-4
allele num: 18648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.264C>T
  hgvsp: ENST00000504671.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.264C>T
  hgvsp: ENST00000333055.3:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.264C>T
  hgvsp: ENST00000307826.4:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.264C>T
  hgvsp: ENST00000427865.2:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.264C>T
  hgvsp: ENST00000514283.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.264C>T
  hgvsp: ENST00000393340.3:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.264C>T
  hgvsp: ENST00000506889.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.264C>T
  hgvsp: ENST00000502678.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.264C>T
  hgvsp: ENST00000446023.2:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.264C>T
  hgvsp: ENST00000506269.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.264C>T
  hgvsp: ENST00000513431.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.264C>T
  hgvsp: ENST00000512695.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.264C>T
  hgvsp: ENST00000514438.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8459
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr88Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/5-180219735-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219735
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219735
    reference: chr 5
allele count: 1
allele frequency: 9.801999607920016e-5
allele num: 10202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.237G>T
  hgvsp: ENST00000333055.3:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.237G>T
  hgvsp: ENST00000512695.1:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.237G>T
  hgvsp: ENST00000393340.3:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.237G>T
  hgvsp: ENST00000513431.1:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.237G>T
  hgvsp: ENST00000514283.1:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.237G>T
  hgvsp: ENST00000502678.1:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.237G>T
  hgvsp: ENST00000427865.2:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.237G>T
  hgvsp: ENST00000506269.1:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.237G>T
  hgvsp: ENST00000446023.2:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.237G>T
  hgvsp: ENST00000514438.1:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.237G>T
  hgvsp: ENST00000307826.4:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.237G>T
  hgvsp: ENST00000504671.1:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.237G>T
  hgvsp: ENST00000506889.1:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu79Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

5-180219739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219739
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219739
    reference: chr 5
allele count: 1
allele frequency: 1.026272577996716e-4
allele num: 9744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.233C>T
  hgvsp: ENSP00000332073.3:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.233C>T
  hgvsp: ENSP00000422588.1:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.233C>T
  hgvsp: ENSP00000377010.3:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.233C>T
  hgvsp: ENSP00000421738.1:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.233C>T
  hgvsp: ENSP00000424891.1:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.233C>T
  hgvsp: ENSP00000404718.2:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.233C>T
  hgvsp: ENSP00000402838.2:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.233C>T
  hgvsp: ENSP00000422906.1:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.233C>T
  hgvsp: ENSP00000425988.1:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.233C>T
  hgvsp: ENSP00000423401.1:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.233C>T
  hgvsp: ENSP00000427116.1:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.233C>T
  hgvsp: ENSP00000424382.1:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.233C>T
  hgvsp: ENSP00000311888.4:p.Ala78Val
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30594
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala78Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

5-180219746-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219746
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219746
    reference: chr 5
allele count: 1
allele frequency: 1.069061364122301e-4
allele num: 9354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.226G>A
  hgvsp: ENSP00000425988.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.226G>A
  hgvsp: ENSP00000311888.4:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.226G>A
  hgvsp: ENSP00000424382.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.226G>A
  hgvsp: ENSP00000421738.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.226G>A
  hgvsp: ENSP00000424891.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.226G>A
  hgvsp: ENSP00000422906.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.226G>A
  hgvsp: ENSP00000377010.3:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.226G>A
  hgvsp: ENSP00000404718.2:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.226G>A
  hgvsp: ENSP00000332073.3:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.226G>A
  hgvsp: ENSP00000422588.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.226G>A
  hgvsp: ENSP00000402838.2:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.226G>A
  hgvsp: ENSP00000427116.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.226G>A
  hgvsp: ENSP00000423401.1:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18511
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31356
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly76Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-180219747-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219747
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219747
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 9480
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.225C>T
  hgvsp: ENST00000446023.2:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.225C>T
  hgvsp: ENST00000506269.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.225C>T
  hgvsp: ENST00000427865.2:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.225C>T
  hgvsp: ENST00000514283.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.225C>T
  hgvsp: ENST00000333055.3:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.225C>T
  hgvsp: ENST00000393340.3:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.225C>T
  hgvsp: ENST00000307826.4:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.225C>T
  hgvsp: ENST00000506889.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.225C>T
  hgvsp: ENST00000504671.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.225C>T
  hgvsp: ENST00000514438.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.225C>T
  hgvsp: ENST00000502678.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.225C>T
  hgvsp: ENST00000513431.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.225C>T
  hgvsp: ENST00000512695.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18576
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile75Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

5-180219761-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219761
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219761
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 9222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.211C>G
  hgvsp: ENSP00000424382.1:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.211C>G
  hgvsp: ENSP00000311888.4:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.211C>G
  hgvsp: ENSP00000425988.1:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.211C>G
  hgvsp: ENSP00000423401.1:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.211C>G
  hgvsp: ENSP00000404718.2:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.211C>G
  hgvsp: ENSP00000424891.1:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.211C>G
  hgvsp: ENSP00000332073.3:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.211C>G
  hgvsp: ENSP00000427116.1:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.211C>G
  hgvsp: ENSP00000402838.2:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.211C>G
  hgvsp: ENSP00000377010.3:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.211C>G
  hgvsp: ENSP00000422588.1:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.211C>G
  hgvsp: ENSP00000422906.1:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.211C>G
  hgvsp: ENSP00000421738.1:p.Leu71Val
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16924
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu71Val
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

5-180219763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219763
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219763
    reference: chr 5
allele count: 18
allele frequency: 1.893939393939394e-3
allele num: 9504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.209G>A
  hgvsp: ENSP00000332073.3:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.209G>A
  hgvsp: ENSP00000402838.2:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.209G>A
  hgvsp: ENSP00000427116.1:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.209G>A
  hgvsp: ENSP00000311888.4:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.209G>A
  hgvsp: ENSP00000404718.2:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.209G>A
  hgvsp: ENSP00000422588.1:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.209G>A
  hgvsp: ENSP00000424382.1:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.209G>A
  hgvsp: ENSP00000422906.1:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.209G>A
  hgvsp: ENSP00000423401.1:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.209G>A
  hgvsp: ENSP00000377010.3:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.209G>A
  hgvsp: ENSP00000424891.1:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.209G>A
  hgvsp: ENSP00000421738.1:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.209G>A
  hgvsp: ENSP00000425988.1:p.Gly70Glu
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32368
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16945
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly70Glu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

5-180219792-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219792
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219792
    reference: chr 5
allele count: 130
allele frequency: 9.875417806137952e-3
allele num: 13164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.180C>T
  hgvsp: ENST00000333055.3:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.180C>T
  hgvsp: ENST00000504671.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.180C>T
  hgvsp: ENST00000514438.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.180C>T
  hgvsp: ENST00000512695.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.180C>T
  hgvsp: ENST00000427865.2:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.180C>T
  hgvsp: ENST00000307826.4:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.180C>T
  hgvsp: ENST00000446023.2:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.180C>T
  hgvsp: ENST00000513431.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.180C>T
  hgvsp: ENST00000393340.3:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.180C>T
  hgvsp: ENST00000506269.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.180C>T
  hgvsp: ENST00000514283.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.180C>T
  hgvsp: ENST00000502678.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.180C>T
  hgvsp: ENST00000506889.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 30824
  bin: 2.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 1.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp60Asp
num of homozygotes: 1
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

5-180219805-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219805
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219805
    reference: chr 5
allele count: 5
allele frequency: 3.404603023287485e-4
allele num: 14686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.167G>A
  hgvsp: ENSP00000377010.3:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.167G>A
  hgvsp: ENSP00000404718.2:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.167G>A
  hgvsp: ENSP00000422588.1:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.167G>A
  hgvsp: ENSP00000402838.2:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.167G>A
  hgvsp: ENSP00000421738.1:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.167G>A
  hgvsp: ENSP00000423401.1:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.167G>A
  hgvsp: ENSP00000332073.3:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.167G>A
  hgvsp: ENSP00000427116.1:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.167G>A
  hgvsp: ENSP00000424382.1:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.167G>A
  hgvsp: ENSP00000422906.1:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.167G>A
  hgvsp: ENSP00000424891.1:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.167G>A
  hgvsp: ENSP00000425988.1:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.167G>A
  hgvsp: ENSP00000311888.4:p.Arg56His
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29004
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21210
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg56His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/5-180219807-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219807
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219807
    reference: chr 5
allele count: 1
allele frequency: 6.502796202367018e-5
allele num: 15378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.165T>G
  hgvsp: ENSP00000332073.3:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.165T>G
  hgvsp: ENSP00000422588.1:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.165T>G
  hgvsp: ENSP00000424891.1:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.165T>G
  hgvsp: ENSP00000311888.4:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.165T>G
  hgvsp: ENSP00000424382.1:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.165T>G
  hgvsp: ENSP00000427116.1:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.165T>G
  hgvsp: ENSP00000404718.2:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.165T>G
  hgvsp: ENSP00000421738.1:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.165T>G
  hgvsp: ENSP00000423401.1:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.165T>G
  hgvsp: ENSP00000402838.2:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.165T>G
  hgvsp: ENSP00000425988.1:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.165T>G
  hgvsp: ENSP00000422906.1:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.165T>G
  hgvsp: ENSP00000377010.3:p.Ile55Met
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21932
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile55Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-180219815-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219815
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219815
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 16400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.157G>T
  hgvsp: ENSP00000422588.1:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.157G>T
  hgvsp: ENSP00000404718.2:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.157G>T
  hgvsp: ENSP00000377010.3:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.157G>T
  hgvsp: ENSP00000424891.1:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.157G>T
  hgvsp: ENSP00000421738.1:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.157G>T
  hgvsp: ENSP00000311888.4:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.157G>T
  hgvsp: ENSP00000423401.1:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.157G>T
  hgvsp: ENSP00000332073.3:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.157G>T
  hgvsp: ENSP00000422906.1:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.157G>T
  hgvsp: ENSP00000402838.2:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.157G>T
  hgvsp: ENSP00000425988.1:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.157G>T
  hgvsp: ENSP00000424382.1:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.157G>T
  hgvsp: ENSP00000427116.1:p.Glu53Ter
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: stop gained
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27078
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22876
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu53Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

5-180219821-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219821
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219821
    reference: chr 5
allele count: 1
allele frequency: 5.751092707614447e-5
allele num: 17388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.151A>G
  hgvsp: ENSP00000402838.2:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.151A>G
  hgvsp: ENSP00000404718.2:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.151A>G
  hgvsp: ENSP00000424891.1:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.151A>G
  hgvsp: ENSP00000424382.1:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.151A>G
  hgvsp: ENSP00000377010.3:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.151A>G
  hgvsp: ENSP00000332073.3:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.151A>G
  hgvsp: ENSP00000427116.1:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.151A>G
  hgvsp: ENSP00000311888.4:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.151A>G
  hgvsp: ENSP00000422906.1:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.151A>G
  hgvsp: ENSP00000422588.1:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.151A>G
  hgvsp: ENSP00000421738.1:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.151A>G
  hgvsp: ENSP00000425988.1:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.151A>G
  hgvsp: ENSP00000423401.1:p.Thr51Ala
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr51Ala
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

5-180219821-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219821
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219821
    reference: chr 5
allele count: 1
allele frequency: 5.751092707614447e-5
allele num: 17388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.151A>C
  hgvsp: ENSP00000311888.4:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.151A>C
  hgvsp: ENSP00000332073.3:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.151A>C
  hgvsp: ENSP00000424891.1:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.151A>C
  hgvsp: ENSP00000422906.1:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.151A>C
  hgvsp: ENSP00000377010.3:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.151A>C
  hgvsp: ENSP00000422588.1:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.151A>C
  hgvsp: ENSP00000404718.2:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.151A>C
  hgvsp: ENSP00000402838.2:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.151A>C
  hgvsp: ENSP00000423401.1:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.151A>C
  hgvsp: ENSP00000427116.1:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.151A>C
  hgvsp: ENSP00000424382.1:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.151A>C
  hgvsp: ENSP00000425988.1:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.151A>C
  hgvsp: ENSP00000421738.1:p.Thr51Pro
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr51Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

5-180219827-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219827
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219827
    reference: chr 5
allele count: 1
allele frequency: 5.661231884057971e-5
allele num: 17664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.145A>G
  hgvsp: ENSP00000311888.4:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.145A>G
  hgvsp: ENSP00000424891.1:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.145A>G
  hgvsp: ENSP00000427116.1:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.145A>G
  hgvsp: ENSP00000332073.3:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.145A>G
  hgvsp: ENSP00000404718.2:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.145A>G
  hgvsp: ENSP00000422906.1:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.145A>G
  hgvsp: ENSP00000402838.2:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.145A>G
  hgvsp: ENSP00000423401.1:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.145A>G
  hgvsp: ENSP00000421738.1:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.145A>G
  hgvsp: ENSP00000377010.3:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.145A>G
  hgvsp: ENSP00000422588.1:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.145A>G
  hgvsp: ENSP00000425988.1:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.145A>G
  hgvsp: ENSP00000424382.1:p.Ser49Gly
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22074
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser49Gly
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

5-180219827-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219827
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219827
    reference: chr 5
allele count: 10
allele frequency: 5.661231884057971e-4
allele num: 17664
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.145A>C
  hgvsp: ENSP00000404718.2:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.145A>C
  hgvsp: ENSP00000311888.4:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.145A>C
  hgvsp: ENSP00000402838.2:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.145A>C
  hgvsp: ENSP00000424891.1:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.145A>C
  hgvsp: ENSP00000377010.3:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.145A>C
  hgvsp: ENSP00000427116.1:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.145A>C
  hgvsp: ENSP00000425988.1:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.145A>C
  hgvsp: ENSP00000422906.1:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.145A>C
  hgvsp: ENSP00000421738.1:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.145A>C
  hgvsp: ENSP00000423401.1:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.145A>C
  hgvsp: ENSP00000424382.1:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.145A>C
  hgvsp: ENSP00000332073.3:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.145A>C
  hgvsp: ENSP00000422588.1:p.Ser49Arg
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22074
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25919
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Ser49Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

5-180219829-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219829
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219829
    reference: chr 5
allele count: 1
allele frequency: 5.538938739337543e-5
allele num: 18054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.143C>G
  hgvsp: ENSP00000424891.1:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.143C>G
  hgvsp: ENSP00000332073.3:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.143C>G
  hgvsp: ENSP00000377010.3:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.143C>G
  hgvsp: ENSP00000311888.4:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.143C>G
  hgvsp: ENSP00000425988.1:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.143C>G
  hgvsp: ENSP00000404718.2:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.143C>G
  hgvsp: ENSP00000424382.1:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.143C>G
  hgvsp: ENSP00000402838.2:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.143C>G
  hgvsp: ENSP00000422906.1:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.143C>G
  hgvsp: ENSP00000421738.1:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.143C>G
  hgvsp: ENSP00000422588.1:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.143C>G
  hgvsp: ENSP00000423401.1:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.143C>G
  hgvsp: ENSP00000427116.1:p.Ala48Gly
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22237
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala48Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

5-180219830-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219830
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219830
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 17806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.142G>A
  hgvsp: ENSP00000332073.3:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.142G>A
  hgvsp: ENSP00000402838.2:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.142G>A
  hgvsp: ENSP00000427116.1:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.142G>A
  hgvsp: ENSP00000311888.4:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.142G>A
  hgvsp: ENSP00000424891.1:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.142G>A
  hgvsp: ENSP00000421738.1:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.142G>A
  hgvsp: ENSP00000423401.1:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.142G>A
  hgvsp: ENSP00000377010.3:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.142G>A
  hgvsp: ENSP00000422588.1:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.142G>A
  hgvsp: ENSP00000424382.1:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.142G>A
  hgvsp: ENSP00000422906.1:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.142G>A
  hgvsp: ENSP00000425988.1:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.142G>A
  hgvsp: ENSP00000404718.2:p.Ala48Thr
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25658
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala48Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

5-180219831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219831
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219831
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 18814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.141C>T
  hgvsp: ENST00000506269.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.141C>T
  hgvsp: ENST00000513431.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.141C>T
  hgvsp: ENST00000512695.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.141C>T
  hgvsp: ENST00000307826.4:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.141C>T
  hgvsp: ENST00000333055.3:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.141C>T
  hgvsp: ENST00000514283.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.141C>T
  hgvsp: ENST00000502678.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.141C>T
  hgvsp: ENST00000514438.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.141C>T
  hgvsp: ENST00000446023.2:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.141C>T
  hgvsp: ENST00000504671.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.141C>T
  hgvsp: ENST00000393340.3:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.141C>T
  hgvsp: ENST00000427865.2:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.141C>T
  hgvsp: ENST00000506889.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22560
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro47Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

5-180219833-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219833
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219833
    reference: chr 5
allele count: 3
allele frequency: 1.582612365477949e-4
allele num: 18956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.139C>G
  hgvsp: ENSP00000332073.3:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.139C>G
  hgvsp: ENSP00000427116.1:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.139C>G
  hgvsp: ENSP00000311888.4:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.139C>G
  hgvsp: ENSP00000424382.1:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.139C>G
  hgvsp: ENSP00000422588.1:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.139C>G
  hgvsp: ENSP00000404718.2:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.139C>G
  hgvsp: ENSP00000422906.1:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.139C>G
  hgvsp: ENSP00000421738.1:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.139C>G
  hgvsp: ENSP00000377010.3:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.139C>G
  hgvsp: ENSP00000402838.2:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.139C>G
  hgvsp: ENSP00000424891.1:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.139C>G
  hgvsp: ENSP00000423401.1:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.139C>G
  hgvsp: ENSP00000425988.1:p.Pro47Ala
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22878
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25322
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro47Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

5-180219834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219834
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219834
    reference: chr 5
allele count: 214
allele frequency: 1.105371900826446e-2
allele num: 19360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.138C>T
  hgvsp: ENST00000513431.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.138C>T
  hgvsp: ENST00000514283.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.138C>T
  hgvsp: ENST00000393340.3:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.138C>T
  hgvsp: ENST00000446023.2:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.138C>T
  hgvsp: ENST00000504671.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.138C>T
  hgvsp: ENST00000307826.4:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.138C>T
  hgvsp: ENST00000506269.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.138C>T
  hgvsp: ENST00000333055.3:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.138C>T
  hgvsp: ENST00000427865.2:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.138C>T
  hgvsp: ENST00000514438.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.138C>T
  hgvsp: ENST00000512695.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.138C>T
  hgvsp: ENST00000506889.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.138C>T
  hgvsp: ENST00000502678.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 1.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 2.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 23059
  bin: 7.5e0
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 25140
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp46Asp
num of homozygotes: 4
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

5-180219835-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219835
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219835
    reference: chr 5
allele count: 11
allele frequency: 6.848462208940356e-4
allele num: 16062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.137A>C
  hgvsp: ENSP00000427116.1:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.137A>C
  hgvsp: ENSP00000311888.4:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.137A>C
  hgvsp: ENSP00000422906.1:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.137A>C
  hgvsp: ENSP00000423401.1:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.137A>C
  hgvsp: ENSP00000424382.1:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.137A>C
  hgvsp: ENSP00000377010.3:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.137A>C
  hgvsp: ENSP00000332073.3:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.137A>C
  hgvsp: ENSP00000422588.1:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.137A>C
  hgvsp: ENSP00000402838.2:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.137A>C
  hgvsp: ENSP00000424891.1:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.137A>C
  hgvsp: ENSP00000421738.1:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.137A>C
  hgvsp: ENSP00000404718.2:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.137A>C
  hgvsp: ENSP00000425988.1:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23130
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25100
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp46Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD

5-180219836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219836
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219836
    reference: chr 5
allele count: 2
allele frequency: 9.971083856815236e-5
allele num: 20058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.136G>A
  hgvsp: ENSP00000425988.1:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.136G>A
  hgvsp: ENSP00000421738.1:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.136G>A
  hgvsp: ENSP00000377010.3:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.136G>A
  hgvsp: ENSP00000424382.1:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.136G>A
  hgvsp: ENSP00000424891.1:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.136G>A
  hgvsp: ENSP00000402838.2:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.136G>A
  hgvsp: ENSP00000423401.1:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.136G>A
  hgvsp: ENSP00000422906.1:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.136G>A
  hgvsp: ENSP00000311888.4:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.136G>A
  hgvsp: ENSP00000404718.2:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.136G>A
  hgvsp: ENSP00000422588.1:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.136G>A
  hgvsp: ENSP00000332073.3:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.136G>A
  hgvsp: ENSP00000427116.1:p.Asp46Asn
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24803
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp46Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-180219837-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219837
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219837
    reference: chr 5
allele count: 1
allele frequency: 4.947555907381753e-5
allele num: 20212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.135C>T
  hgvsp: ENST00000307826.4:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.135C>T
  hgvsp: ENST00000506889.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.135C>T
  hgvsp: ENST00000427865.2:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.135C>T
  hgvsp: ENST00000393340.3:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.135C>T
  hgvsp: ENST00000446023.2:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.135C>T
  hgvsp: ENST00000506269.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.135C>T
  hgvsp: ENST00000504671.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.135C>T
  hgvsp: ENST00000333055.3:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.135C>T
  hgvsp: ENST00000502678.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.135C>T
  hgvsp: ENST00000512695.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.135C>T
  hgvsp: ENST00000513431.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.135C>T
  hgvsp: ENST00000514438.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.135C>T
  hgvsp: ENST00000514283.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly45Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

5-180219838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219838
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219838
    reference: chr 5
allele count: 303
allele frequency: 1.468734852157053e-2
allele num: 20630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.134G>A
  hgvsp: ENSP00000425988.1:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.134G>A
  hgvsp: ENSP00000332073.3:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.134G>A
  hgvsp: ENSP00000402838.2:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.134G>A
  hgvsp: ENSP00000404718.2:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.134G>A
  hgvsp: ENSP00000422906.1:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.134G>A
  hgvsp: ENSP00000424891.1:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.134G>A
  hgvsp: ENSP00000424382.1:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.134G>A
  hgvsp: ENSP00000423401.1:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.134G>A
  hgvsp: ENSP00000377010.3:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.134G>A
  hgvsp: ENSP00000422588.1:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.134G>A
  hgvsp: ENSP00000427116.1:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.134G>A
  hgvsp: ENSP00000311888.4:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.134G>A
  hgvsp: ENSP00000421738.1:p.Gly45Asp
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 1.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 24036
  bin: 2.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 2.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
hgvs: p.Gly45Asp
num of homozygotes: 4
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-180219842-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219842
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219842
    reference: chr 5
allele count: 1
allele frequency: 4.690871563936579e-5
allele num: 21318
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.130G>T
  hgvsp: ENSP00000404718.2:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.130G>T
  hgvsp: ENSP00000424382.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.130G>T
  hgvsp: ENSP00000424891.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.130G>T
  hgvsp: ENSP00000332073.3:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.130G>T
  hgvsp: ENSP00000311888.4:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.130G>T
  hgvsp: ENSP00000377010.3:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.130G>T
  hgvsp: ENSP00000427116.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.130G>T
  hgvsp: ENSP00000425988.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.130G>T
  hgvsp: ENSP00000421738.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.130G>T
  hgvsp: ENSP00000402838.2:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.130G>T
  hgvsp: ENSP00000422906.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.130G>T
  hgvsp: ENSP00000422588.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.130G>T
  hgvsp: ENSP00000423401.1:p.Asp44Tyr
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25800
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp44Tyr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-180219842-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219842
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219842
    reference: chr 5
allele count: 94
allele frequency: 4.409419270100384e-3
allele num: 21318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.130G>A
  hgvsp: ENSP00000424891.1:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.130G>A
  hgvsp: ENSP00000425988.1:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.130G>A
  hgvsp: ENSP00000422588.1:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.130G>A
  hgvsp: ENSP00000427116.1:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.130G>A
  hgvsp: ENSP00000404718.2:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.130G>A
  hgvsp: ENSP00000311888.4:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.130G>A
  hgvsp: ENSP00000422906.1:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.130G>A
  hgvsp: ENSP00000421738.1:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.130G>A
  hgvsp: ENSP00000332073.3:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.130G>A
  hgvsp: ENSP00000423401.1:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.130G>A
  hgvsp: ENSP00000424382.1:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.130G>A
  hgvsp: ENSP00000377010.3:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.130G>A
  hgvsp: ENSP00000402838.2:p.Asp44Asn
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 1.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 22429
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
hgvs: p.Asp44Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

5-180219845-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219845
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219845
    reference: chr 5
allele count: 40
allele frequency: 1.798884691491275e-3
allele num: 22236
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.127C>G
  hgvsp: ENSP00000424891.1:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.127C>G
  hgvsp: ENSP00000421738.1:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.127C>G
  hgvsp: ENSP00000423401.1:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.127C>G
  hgvsp: ENSP00000311888.4:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.127C>G
  hgvsp: ENSP00000422906.1:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.127C>G
  hgvsp: ENSP00000402838.2:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.127C>G
  hgvsp: ENSP00000425988.1:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.127C>G
  hgvsp: ENSP00000377010.3:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.127C>G
  hgvsp: ENSP00000422588.1:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.127C>G
  hgvsp: ENSP00000404718.2:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.127C>G
  hgvsp: ENSP00000332073.3:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.127C>G
  hgvsp: ENSP00000427116.1:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.127C>G
  hgvsp: ENSP00000424382.1:p.Leu43Val
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27632
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20567
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu43Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/5-180219848-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219848
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219848
    reference: chr 5
allele count: 1
allele frequency: 4.430660168365087e-5
allele num: 22570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.124G>T
  hgvsp: ENSP00000424382.1:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.124G>T
  hgvsp: ENSP00000423401.1:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.124G>T
  hgvsp: ENSP00000424891.1:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.124G>T
  hgvsp: ENSP00000311888.4:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.124G>T
  hgvsp: ENSP00000422588.1:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.124G>T
  hgvsp: ENSP00000427116.1:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.124G>T
  hgvsp: ENSP00000377010.3:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.124G>T
  hgvsp: ENSP00000332073.3:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.124G>T
  hgvsp: ENSP00000421738.1:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.124G>T
  hgvsp: ENSP00000402838.2:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.124G>T
  hgvsp: ENSP00000404718.2:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.124G>T
  hgvsp: ENSP00000425988.1:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.124G>T
  hgvsp: ENSP00000422906.1:p.Ala42Ser
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala42Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

5-180219848-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219848
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219848
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 22570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.124G>A
  hgvsp: ENSP00000332073.3:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.124G>A
  hgvsp: ENSP00000425988.1:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.124G>A
  hgvsp: ENSP00000402838.2:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.124G>A
  hgvsp: ENSP00000422906.1:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.124G>A
  hgvsp: ENSP00000311888.4:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.124G>A
  hgvsp: ENSP00000424382.1:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.124G>A
  hgvsp: ENSP00000421738.1:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.124G>A
  hgvsp: ENSP00000423401.1:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.124G>A
  hgvsp: ENSP00000404718.2:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.124G>A
  hgvsp: ENSP00000424891.1:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.124G>A
  hgvsp: ENSP00000422588.1:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.124G>A
  hgvsp: ENSP00000427116.1:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.124G>A
  hgvsp: ENSP00000377010.3:p.Ala42Thr
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28749
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala42Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

5-180219849-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219849
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219849
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 22892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.123C>T
  hgvsp: ENST00000502678.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.123C>T
  hgvsp: ENST00000504671.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.123C>T
  hgvsp: ENST00000446023.2:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.123C>T
  hgvsp: ENST00000514438.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.123C>T
  hgvsp: ENST00000513431.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.123C>T
  hgvsp: ENST00000514283.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.123C>T
  hgvsp: ENST00000506269.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.123C>T
  hgvsp: ENST00000307826.4:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.123C>T
  hgvsp: ENST00000393340.3:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.123C>T
  hgvsp: ENST00000427865.2:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.123C>T
  hgvsp: ENST00000333055.3:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.123C>T
  hgvsp: ENST00000512695.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.123C>T
  hgvsp: ENST00000506889.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29347
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser41Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

5-180219855-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219855
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219855
    reference: chr 5
allele count: 229
allele frequency: 9.276513003321721e-3
allele num: 24686
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.117A>G
  hgvsp: ENST00000427865.2:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.117A>G
  hgvsp: ENST00000512695.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.117A>G
  hgvsp: ENST00000502678.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.117A>G
  hgvsp: ENST00000307826.4:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.117A>G
  hgvsp: ENST00000393340.3:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.117A>G
  hgvsp: ENST00000446023.2:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.117A>G
  hgvsp: ENST00000333055.3:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.117A>G
  hgvsp: ENST00000513431.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.117A>G
  hgvsp: ENST00000514283.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.117A>G
  hgvsp: ENST00000504671.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.117A>G
  hgvsp: ENST00000514438.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.117A>G
  hgvsp: ENST00000506889.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.117A>G
  hgvsp: ENST00000506269.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 1.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 15728
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 31689
  bin: 7.5e0
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Ser39Ser
num of homozygotes: 5
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

5-180219856-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219856
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219856
    reference: chr 5
allele count: 2
allele frequency: 8.051529790660226e-5
allele num: 24840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.116C>T
  hgvsp: ENSP00000424891.1:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.116C>T
  hgvsp: ENSP00000402838.2:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.116C>T
  hgvsp: ENSP00000422588.1:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.116C>T
  hgvsp: ENSP00000377010.3:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.116C>T
  hgvsp: ENSP00000425988.1:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.116C>T
  hgvsp: ENSP00000427116.1:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.116C>T
  hgvsp: ENSP00000404718.2:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.116C>T
  hgvsp: ENSP00000311888.4:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.116C>T
  hgvsp: ENSP00000421738.1:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.116C>T
  hgvsp: ENSP00000332073.3:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.116C>T
  hgvsp: ENSP00000423401.1:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.116C>T
  hgvsp: ENSP00000422906.1:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.116C>T
  hgvsp: ENSP00000424382.1:p.Ser39Leu
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4929
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser39Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

5-180219857-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219857
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219857
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 25180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.115T>A
  hgvsp: ENSP00000427116.1:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.115T>A
  hgvsp: ENSP00000402838.2:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.115T>A
  hgvsp: ENSP00000377010.3:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.115T>A
  hgvsp: ENSP00000424382.1:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.115T>A
  hgvsp: ENSP00000311888.4:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.115T>A
  hgvsp: ENSP00000332073.3:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.115T>A
  hgvsp: ENSP00000424891.1:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.115T>A
  hgvsp: ENSP00000421738.1:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.115T>A
  hgvsp: ENSP00000425988.1:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.115T>A
  hgvsp: ENSP00000423401.1:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.115T>A
  hgvsp: ENSP00000404718.2:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.115T>A
  hgvsp: ENSP00000422906.1:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.115T>A
  hgvsp: ENSP00000422588.1:p.Ser39Thr
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32327
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser39Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

5-180219862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180219862
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 180219862
    reference: chr 5
allele count: 1
allele frequency: 3.581661891117478e-5
allele num: 27920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000377010
  ensembl transcript: ENST00000393340
  gene symbol: MGAT1
  hgvsc: ENST00000393340.3:c.110C>T
  hgvsp: ENSP00000377010.3:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000311888
  ensembl transcript: ENST00000307826
  gene symbol: MGAT1
  hgvsc: ENST00000307826.4:c.110C>T
  hgvsp: ENSP00000311888.4:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422906
  ensembl transcript: ENST00000506269
  gene symbol: MGAT1
  hgvsc: ENST00000506269.1:c.110C>T
  hgvsp: ENSP00000422906.1:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000332073
  ensembl transcript: ENST00000333055
  gene symbol: MGAT1
  hgvsc: ENST00000333055.3:c.110C>T
  hgvsp: ENSP00000332073.3:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000402838
  ensembl transcript: ENST00000427865
  gene symbol: MGAT1
  hgvsc: ENST00000427865.2:c.110C>T
  hgvsp: ENSP00000402838.2:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000421738
  ensembl transcript: ENST00000514438
  gene symbol: MGAT1
  hgvsc: ENST00000514438.1:c.110C>T
  hgvsp: ENSP00000421738.1:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424891
  ensembl transcript: ENST00000504671
  gene symbol: MGAT1
  hgvsc: ENST00000504671.1:c.110C>T
  hgvsp: ENSP00000424891.1:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000422588
  ensembl transcript: ENST00000502678
  gene symbol: MGAT1
  hgvsc: ENST00000502678.1:c.110C>T
  hgvsp: ENSP00000422588.1:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000427116
  ensembl transcript: ENST00000512695
  gene symbol: MGAT1
  hgvsc: ENST00000512695.1:c.110C>T
  hgvsp: ENSP00000427116.1:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000425988
  ensembl transcript: ENST00000506889
  gene symbol: MGAT1
  hgvsc: ENST00000506889.1:c.110C>T
  hgvsp: ENSP00000425988.1:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000424382
  ensembl transcript: ENST00000514283
  gene symbol: MGAT1
  hgvsc: ENST00000514283.1:c.110C>T
  hgvsp: ENSP00000424382.1:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000423401
  ensembl transcript: ENST00000513431
  gene symbol: MGAT1
  hgvsc: ENST00000513431.1:c.110C>T
  hgvsp: ENSP00000423401.1:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131446
  ensembl protein: ENSP00000404718
  ensembl transcript: ENST00000446023
  gene symbol: MGAT1
  hgvsc: ENST00000446023.2:c.110C>T
  hgvsp: ENSP00000404718.2:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/7044
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro37Leu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6996
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.185677021579322e-4
allele num: 8434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.58e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.818e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: -2.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

DP
type: SiteQuality
SIO_000300: 1.555409e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 6996
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.352055696678897e-4
allele num: 63774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-2

DP
type: SiteQuality
SIO_000300: 1.555321e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

QD
type: SiteQuality
SIO_000300: 1.279e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e-1

GenotypeQuality
all individuals: 337
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041016031646887e-4
allele num: 9606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 4.048e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.394e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 1.554321e6

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

GenotypeQuality
all individuals: 47068
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 9.75e1
variant carriers: 111

GenotypeQuality
all individuals: 373
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6972
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.03950103950104e-4
allele num: 9620
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.754078231889142e-4
allele num: 11402
num of homozygotes: 0

South Asian
type: Population
allele count: 95
allele frequency: 5.79551000488043e-3
allele num: 16392
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.038256506741925e-4
allele num: 63780
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 1.558027e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
SIO_000300: 1.299e1

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

FS
type: SiteQuality
SIO_000300: 1.135e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

GenotypeQuality
all individuals: 1274
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 968
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6972
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567889620570712e-5
allele num: 63780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

QD
type: SiteQuality
SIO_000300: 1.299e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 1.558027e6

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

FS
type: SiteQuality
SIO_000300: 1.135e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

GenotypeQuality
all individuals: 973
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6953
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46923
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 9.75e1
variant carriers: 93

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.775008775008775e-4
allele num: 11396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568627450980392e-5
allele num: 63750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

African
type: Population
allele count: 85
allele frequency: 8.839434276206324e-3
allele num: 9616
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

DP
type: SiteQuality
SIO_000300: 1.5533e6

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 1.122e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6967
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.18427285646613e-4
allele num: 8444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.88e-1

QD
type: SiteQuality
SIO_000300: 1.604e1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.071e0

DP
type: SiteQuality
SIO_000300: 1.549954e6

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568381430363864e-5
allele num: 63760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.67e-1

FS
type: SiteQuality
SIO_000300: 7.315e0

VQSLOD
type: SiteQuality
SIO_000300: 5.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.179e1

DP
type: SiteQuality
SIO_000300: 1.549049e6

GenotypeQuality
all individuals: 1272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47102
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56907048264608e-5
allele num: 63732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.737091425864519e-4
allele num: 8444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

DP
type: SiteQuality
SIO_000300: 1.549315e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.38e-1

FS
type: SiteQuality
SIO_000300: 5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.07e-1

QD
type: SiteQuality
SIO_000300: 1.474e1

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6946
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 48

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

South Asian
type: Population
allele count: 50
allele frequency: 3.057729941291585e-3
allele num: 16352
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.197e0

QD
type: SiteQuality
SIO_000300: 1.251e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.34e0

DP
type: SiteQuality
SIO_000300: 1.548244e6

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46803
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183992422448496e-4
allele num: 8446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63592
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.869e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.678e0

QD
type: SiteQuality
SIO_000300: 6.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.233e0

MQRankSum
type: SiteQuality
SIO_000300: -7.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.543921e6

GenotypeQuality
all individuals: 65
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.575051189163648e-5
allele num: 63490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16254
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.541771e6

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.912e1

FS
type: SiteQuality
SIO_000300: 4.963e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

QD
type: SiteQuality
SIO_000300: 9.84e0

VQSLOD
type: SiteQuality
SIO_000300: -2.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

GenotypeQuality
all individuals: 313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1250
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576193178235924e-5
allele num: 63444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

DP
type: SiteQuality
SIO_000300: 1.540339e6

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.027e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 3.541e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 298
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GenotypeQuality
all individuals: 95
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62862
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.11999152003392e-4
allele num: 9434
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 4.787e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

VQSLOD
type: SiteQuality
SIO_000300: 4.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.515427e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.188e1

GenotypeQuality
all individuals: 279
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 686
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GenotypeQuality
all individuals: 203
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 226
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.970667941973537e-5
allele num: 12546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

FS
type: SiteQuality
SIO_000300: 4.148e0

VQSLOD
type: SiteQuality
SIO_000300: 5.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.340616e6

GenotypeQuality
all individuals: 978
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 14
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.855218730288301e-5
allele num: 53902
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.375137513751375e-4
allele num: 7272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.738e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.88e-1

FS
type: SiteQuality
SIO_000300: 6.645e0

DP
type: SiteQuality
SIO_000300: 1.156317e6

QD
type: SiteQuality
SIO_000300: 8.119999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -3.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29030
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variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.855287569573284e-5
allele num: 53900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

QD
type: SiteQuality
SIO_000300: 7.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e0

VQSLOD
type: SiteQuality
SIO_000300: -3.768e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 7.659e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.091e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.665e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.153384e6

GenotypeQuality
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28316
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4944
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.292657704239917e-4
allele num: 7736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 2.161e0

DP
type: SiteQuality
SIO_000300: 1.144169e6

VQSLOD
type: SiteQuality
SIO_000300: -2.961e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

GenotypeQuality
all individuals: 3166
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 240
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 120

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1779
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variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 5.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4714
num of homozygotes: 0

Latino
type: Population
allele count: 119
allele frequency: 1.265418970650787e-2
allele num: 9404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.879728419010669e-5
allele num: 51550
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.315e1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.096e0

FS
type: SiteQuality
SIO_000300: 1.257e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.076188e6

GenotypeQuality
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19397
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GenotypeQuality
all individuals: 234
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48014
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.72732e5

MQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.71e-1

FS
type: SiteQuality
SIO_000300: 4.742e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.6e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.366639844748426e-5
allele num: 42254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3744
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.771793054571226e-4
allele num: 5644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.53e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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FS
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DP
type: SiteQuality
SIO_000300: 8.11727e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.088e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.366639844748426e-5
allele num: 42254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.53e-1

QD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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MQ
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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MQ
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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ClippingRankSum
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MQ
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QD
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FS
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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European (Finnish)
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Other
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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DP
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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African
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South Asian
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MQ
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VQSLOD
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DP
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FS
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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MQ
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FS
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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MQ
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DP
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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African
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East Asian
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South Asian
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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MQ
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FS
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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Latino
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Other
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QD
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FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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ReadPosRankSum
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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East Asian
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Other
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DP
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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FS
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Other
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African
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Latino
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South Asian
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East Asian
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BaseQRankSum
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MQ
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FS
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VQSLOD
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DP
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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allele num: 3658
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East Asian
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Latino
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Other
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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DP
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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European (Finnish)
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Other
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East Asian
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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VQSLOD
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FS
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

African
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European (Finnish)
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num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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South Asian
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MQ
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FS
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QD
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

Other
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East Asian
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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MQ
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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FS
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DP
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ReadPosRankSum
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QD
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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QD
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 1456
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East Asian
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Latino
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allele num: 312
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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VQSLOD
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BaseQRankSum
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MQ
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FS
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QD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5642
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 7.974481658692185e-4
allele num: 6270
num of homozygotes: 0

East Asian
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ReadPosRankSum
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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DP
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1742
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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QD
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.40016802016242e-4
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 6892
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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South Asian
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Finnish)
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Latino
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African
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South Asian
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European (Non-Finnish)
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MQRankSum
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FS
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DP
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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African
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East Asian
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ClippingRankSum
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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East Asian
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Other
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European (Non-Finnish)
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QD
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ReadPosRankSum
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VQSLOD
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FS
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DP
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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European (Finnish)
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African
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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MQRankSum
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DP
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FS
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MQ
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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African
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Latino
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East Asian
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South Asian
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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FS
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QD
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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DP
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BaseQRankSum
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QD
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MQ
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GenotypeQuality
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East Asian
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South Asian
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African
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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DP
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MQ
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FS
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.083333333333333e-3
allele num: 960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
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SIO_000300: 4.26464e5

QD
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.0351966873706e-3
allele num: 966
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 1.39e0

MQ
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InbreedingCoeff
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SIO_000300: -4.57e-2

VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
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SIO_000300: 5.46e-1

GenotypeDepth
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variant carriers: 7

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1000
num of homozygotes: 0

African
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allele frequency: 3.831948291782087e-2
allele num: 2166
num of homozygotes: 0

South Asian
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allele count: 215
allele frequency: 2.733977619532045e-2
allele num: 7864
num of homozygotes: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.164556962025316e-3
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.485130111524163e-4
allele num: 8608
num of homozygotes: 0

MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.25e-1

InbreedingCoeff
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SIO_000300: -4.12e-2

QD
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SIO_000300: 1.931e1

VQSLOD
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SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 9.541984732824427e-4
allele num: 1048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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DP
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SIO_000300: 4.5925e5

MQRankSum
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FS
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.84e-2

GenotypeDepth
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variant carriers: 71

GenotypeDepth
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variant carriers: 16

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.248439450686642e-4
allele num: 8010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 2
allele frequency: 3.095975232198143e-3
allele num: 646
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Other
type: Population
allele count: 0
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African
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allele count: 89
allele frequency: 3.969669937555754e-2
allele num: 2242
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.22568439795237e-4
allele num: 8986
num of homozygotes: 0

East Asian
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VQSLOD
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MQRankSum
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QD
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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SIO_000300: 3.84e-2

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 4.26e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9498
num of homozygotes: 0

African
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allele count: 36
allele frequency: 1.530612244897959e-2
allele num: 2352
num of homozygotes: 0

Latino
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allele frequency: 2.857142857142857e-3
allele num: 700
num of homozygotes: 0

East Asian
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South Asian
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Other
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European (Finnish)
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
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European (Non-Finnish)
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Latino
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East Asian
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African
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Other
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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InbreedingCoeff
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DP
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

Other
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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DP
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MQ
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ReadPosRankSum
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SIO_000300: 5.5e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 5
allele frequency: 4.627915586819697e-4
allele num: 10804
num of homozygotes: 1

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 8474
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 1.196172248803828e-2
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num of homozygotes: 0

African
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allele frequency: 7.790782735918068e-2
allele num: 2734
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Other
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MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
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QD
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FS
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SIO_000300: 5.82e-1

MQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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African
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Other
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VQSLOD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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ClippingRankSum
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FS
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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East Asian
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African
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QD
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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