9-4125834-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125834
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125834
    reference: chr 9
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.496C>A
  hgvsp: ENSP00000417883.1:p.Pro166Thr
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.31C>A
  hgvsp: ENSP00000325494.10:p.Pro11Thr
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-6953C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.496C>A
  hgvsp: ENSP00000371398.3:p.Pro166Thr
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-6953C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.31C>A
  hgvsp: ENSP00000418671.1:p.Pro11Thr
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.31C>A
  hgvsp: ENSP00000418995.1:p.Pro11Thr
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.31C>A
  hgvsp: ENSP00000418005.1:p.Pro11Thr
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.496C>A
  hgvsp: ENSP00000417794.1:p.Pro166Thr
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-6953C>A
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37465
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro166Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

9-4125841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125841
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125841
    reference: chr 9
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.489C>T
  hgvsp: ENST00000481827.1:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.489C>T
  hgvsp: ENST00000477901.1:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.24C>T
  hgvsp: ENST00000324333.10:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.24C>T
  hgvsp: ENST00000462164.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.24C>T
  hgvsp: ENST00000478315.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-6960C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-6960C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.489C>T
  hgvsp: ENST00000381971.3:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-6960C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.24C>T
  hgvsp: ENST00000478844.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu163Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

9-4125849-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125849
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125849
    reference: chr 9
allele count: 18
allele frequency: 1.482994990772476e-4
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.481C>A
  hgvsp: ENSP00000417883.1:p.Leu161Met
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.16C>A
  hgvsp: ENSP00000325494.10:p.Leu6Met
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.481C>A
  hgvsp: ENSP00000417794.1:p.Leu161Met
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.16C>A
  hgvsp: ENSP00000418671.1:p.Leu6Met
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.16C>A
  hgvsp: ENSP00000418005.1:p.Leu6Met
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-6968C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-6968C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-6968C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.481C>A
  hgvsp: ENSP00000371398.3:p.Leu161Met
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.16C>A
  hgvsp: ENSP00000418995.1:p.Leu6Met
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu161Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

9-4125851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125851
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125851
    reference: chr 9
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-6970G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.14G>A
  hgvsp: ENSP00000325494.10:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.14G>A
  hgvsp: ENSP00000418671.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.14G>A
  hgvsp: ENSP00000418005.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.479G>A
  hgvsp: ENSP00000417794.1:p.Arg160Gln
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-6970G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.479G>A
  hgvsp: ENSP00000371398.3:p.Arg160Gln
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.479G>A
  hgvsp: ENSP00000417883.1:p.Arg160Gln
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.14G>A
  hgvsp: ENSP00000418995.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-6970G>A
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8286
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg160Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

9-4125852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125852
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125852
    reference: chr 9
allele count: 2
allele frequency: 1.647962294622699e-5
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.478C>T
  hgvsp: ENSP00000417883.1:p.Arg160Ter
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.13C>T
  hgvsp: ENSP00000325494.10:p.Arg5Ter
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-6971C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.13C>T
  hgvsp: ENSP00000418005.1:p.Arg5Ter
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.13C>T
  hgvsp: ENSP00000418995.1:p.Arg5Ter
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.478C>T
  hgvsp: ENSP00000417794.1:p.Arg160Ter
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.13C>T
  hgvsp: ENSP00000418671.1:p.Arg5Ter
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-6971C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-6971C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.478C>T
  hgvsp: ENSP00000371398.3:p.Arg160Ter
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg160Ter
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/9-4125858-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125858
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125858
    reference: chr 9
allele count: 9
allele frequency: 7.41485277397881e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-6977G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.7G>T
  hgvsp: ENSP00000418995.1:p.Val3Phe
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.7G>T
  hgvsp: ENSP00000325494.10:p.Val3Phe
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-6977G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.7G>T
  hgvsp: ENSP00000418671.1:p.Val3Phe
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.7G>T
  hgvsp: ENSP00000418005.1:p.Val3Phe
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-6977G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.472G>T
  hgvsp: ENSP00000371398.3:p.Val158Phe
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.472G>T
  hgvsp: ENSP00000417794.1:p.Val158Phe
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.472G>T
  hgvsp: ENSP00000417883.1:p.Val158Phe
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11773
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37484
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val158Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

9-4125858-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125858
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125858
    reference: chr 9
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-6977G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.472G>C
  hgvsp: ENSP00000417794.1:p.Val158Leu
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-6977G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.472G>C
  hgvsp: ENSP00000371398.3:p.Val158Leu
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.7G>C
  hgvsp: ENSP00000418995.1:p.Val3Leu
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.472G>C
  hgvsp: ENSP00000417883.1:p.Val158Leu
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.7G>C
  hgvsp: ENSP00000325494.10:p.Val3Leu
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.7G>C
  hgvsp: ENSP00000418671.1:p.Val3Leu
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-6977G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.7G>C
  hgvsp: ENSP00000418005.1:p.Val3Leu
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8285
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val158Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/9-4125862-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125862
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125862
    reference: chr 9
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.3G>T
  hgvsp: ENSP00000418671.1:p.Met1?
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.3G>T
  hgvsp: ENSP00000325494.10:p.Met1?
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.468G>T
  hgvsp: ENSP00000371398.3:p.Met156Ile
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.468G>T
  hgvsp: ENSP00000417794.1:p.Met156Ile
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-6981G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.3G>T
  hgvsp: ENSP00000418995.1:p.Met1?
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-6981G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.3G>T
  hgvsp: ENSP00000418005.1:p.Met1?
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.468G>T
  hgvsp: ENSP00000417883.1:p.Met156Ile
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-6981G>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

9-4125867-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125867
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125867
    reference: chr 9
allele count: 2
allele frequency: 1.648016612007449e-5
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-3C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-3C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-3C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-6986C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.463C>G
  hgvsp: ENSP00000417883.1:p.Pro155Ala
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-6986C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.463C>G
  hgvsp: ENSP00000371398.3:p.Pro155Ala
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-3C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.463C>G
  hgvsp: ENSP00000417794.1:p.Pro155Ala
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-6986C>G
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro155Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

9-4125875-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125875
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125875
    reference: chr 9
allele count: 2
allele frequency: 1.648043772042586e-5
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-6994C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-6994C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.455C>T
  hgvsp: ENSP00000417883.1:p.Thr152Ile
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.455C>T
  hgvsp: ENSP00000371398.3:p.Thr152Ile
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.455C>T
  hgvsp: ENSP00000417794.1:p.Thr152Ile
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-6994C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-11C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr152Ile
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

9-4125875-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125875
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125875
    reference: chr 9
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.455C>G
  hgvsp: ENSP00000417794.1:p.Thr152Ser
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-11C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.455C>G
  hgvsp: ENSP00000371398.3:p.Thr152Ser
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-11C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-6994C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-11C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.455C>G
  hgvsp: ENSP00000417883.1:p.Thr152Ser
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-11C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-6994C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-6994C>G
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37482
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr152Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

9-4125890-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125890
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125890
    reference: chr 9
allele count: 2
allele frequency: 1.64836976230508e-5
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.440A>G
  hgvsp: ENSP00000371398.3:p.Asn147Ser
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.440A>G
  hgvsp: ENSP00000417883.1:p.Asn147Ser
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-26A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-26A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7009A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-26A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7009A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.440A>G
  hgvsp: ENSP00000417794.1:p.Asn147Ser
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7009A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-26A>G
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn147Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/9-4125896-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125896
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125896
    reference: chr 9
allele count: 4
allele frequency: 3.297174321606383e-5
allele num: 121316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.434G>T
  hgvsp: ENSP00000417883.1:p.Ser145Ile
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7015G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-32G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-32G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7015G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-32G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.434G>T
  hgvsp: ENSP00000417794.1:p.Ser145Ile
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-32G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.434G>T
  hgvsp: ENSP00000371398.3:p.Ser145Ile
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7015G>T
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37442
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser145Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

9-4125908-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125908
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125908
    reference: chr 9
allele count: 22
allele frequency: 1.814313282422603e-4
allele num: 121258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.422T>C
  hgvsp: ENSP00000417883.1:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.422T>C
  hgvsp: ENSP00000371398.3:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-44T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7027T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-44T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-44T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7027T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.422T>C
  hgvsp: ENSP00000417794.1:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-44T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7027T>C
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile141Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

9-4125915-T-TAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125915
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125918
    reference: chr 9
allele count: 2
allele frequency: 1.649593375233005e-5
allele num: 121242
alternate allele: TAGG
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-52_-51insCCT
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-52_-51insCCT
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.414_415insCCT
  hgvsp: ENSP00000371398.3:p.Cys138_Lys139insPro
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.414_415insCCT
  hgvsp: ENSP00000417794.1:p.Cys138_Lys139insPro
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.414_415insCCT
  hgvsp: ENSP00000417883.1:p.Cys138_Lys139insPro
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7035_417-7034insCCT
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7035_356-7034insCCT
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-52_-51insCCT
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-52_-51insCCT
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7035_389-7034insCCT
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys138_Lys139insPro
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

9-4125921-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125921
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125921
    reference: chr 9
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-57C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-57C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7040C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.409C>T
  hgvsp: ENSP00000417794.1:p.Gln137Ter
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.409C>T
  hgvsp: ENSP00000417883.1:p.Gln137Ter
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.409C>T
  hgvsp: ENSP00000371398.3:p.Gln137Ter
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-57C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7040C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-57C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7040C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln137Ter
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-4125925-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125925
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125925
    reference: chr 9
allele count: 1
allele frequency: 8.258183860205463e-6
allele num: 121092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-61G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7044G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-61G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-61G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-61G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.405G>C
  hgvsp: ENST00000381971.3:c.405G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7044G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.405G>C
  hgvsp: ENST00000481827.1:c.405G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.405G>C
  hgvsp: ENST00000477901.1:c.405G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7044G>C
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly135Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

9-4125932-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125932
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125932
    reference: chr 9
allele count: 4
allele frequency: 3.312629399585921e-5
allele num: 120750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7051G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7051G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-68G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.398G>C
  hgvsp: ENSP00000371398.3:p.Gly133Ala
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.398G>C
  hgvsp: ENSP00000417883.1:p.Gly133Ala
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-68G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.398G>C
  hgvsp: ENSP00000417794.1:p.Gly133Ala
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-68G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-68G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7051G>C
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11565
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly133Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

9-4125954-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125954
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125954
    reference: chr 9
allele count: 1
allele frequency: 8.404773911581778e-6
allele num: 118980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-77-13C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7073C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.389-13C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-77-13C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-77-13C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-77-13C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7073C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.389-13C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.389-13C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7073C>A
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

9-4125956-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125956
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125956
    reference: chr 9
allele count: 1
allele frequency: 8.42133629764371e-6
allele num: 118746
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7075T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-77-15T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7075T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-77-15T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.389-15T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-77-15T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.389-15T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-77-15T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7075T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.389-15T>C
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

9-4125960-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125960
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125960
    reference: chr 9
allele count: 57
allele frequency: 4.817688523758811e-4
allele num: 118314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7079C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7079C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-77-19C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-77-19C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-77-19C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-77-19C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.389-19C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7079C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.389-19C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.389-19C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9396
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23333
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7428
  bin: 9.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 6720
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

9-4125972-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125972
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125972
    reference: chr 9
allele count: 2
allele frequency: 1.706339049569149e-5
allele num: 117210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7091A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7091A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7091A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.389-31A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.389-31A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-77-31A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-77-31A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-77-31A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-77-31A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.389-31A>C
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17287
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4576
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

9-4125973-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125973
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125973
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 116708
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.389-32C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-77-32C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7092C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-77-32C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-77-32C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7092C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7092C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.389-32C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-77-32C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.389-32C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9864
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6148
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4983
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

9-4125975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125975
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125975
    reference: chr 9
allele count: 1
allele frequency: 8.566631257924135e-6
allele num: 116732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-77-34G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-77-34G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-77-34G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.389-34G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7094G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7094G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-77-34G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.389-34G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7094G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.389-34G>A
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

9-4125979-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125979
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125979
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 116086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-77-38A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.389-38A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.389-38A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7098A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7098A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-77-38A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-77-38A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-77-38A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7098A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.389-38A>T
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

9-4125979-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125979
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125979
    reference: chr 9
allele count: 6
allele frequency: 5.168581913409025e-5
allele num: 116086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7098A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-77-38A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.389-38A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7098A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-77-38A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-77-38A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-77-38A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.389-38A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.389-38A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7098A>C
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13420
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

9-4125981-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125981
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125981
    reference: chr 9
allele count: 5
allele frequency: 4.336964818541392e-5
allele num: 115288
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.389-40G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.389-40G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7100G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.389-40G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7100G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7100G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-77-40G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-77-40G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-77-40G>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-77-40G>A
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15277
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/9-4125982-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125982
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125982
    reference: chr 9
allele count: 1
allele frequency: 8.681912104321855e-6
allele num: 115182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-77-41T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.389-41T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.389-41T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7101T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-77-41T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7101T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-77-41T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7101T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.389-41T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-77-41T>G
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15224
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7375
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-4125986-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125986
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125986
    reference: chr 9
allele count: 16
allele frequency: 1.396696812039527e-4
allele num: 114556
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.389-45C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7105C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-77-45C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-77-45C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-77-45C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-77-45C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7105C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7105C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.389-45C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.389-45C>G
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9126
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15099
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10139
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4825
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3420
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

9-4125993-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4125993
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4125993
    reference: chr 9
allele count: 4
allele frequency: 3.540073633531577e-5
allele num: 112992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.389-7112C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-77-52C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000325494
  ensembl transcript: ENST00000324333
  gene symbol: GLIS3
  hgvsc: ENST00000324333.10:c.-77-52C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.389-52C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000473846
  gene symbol: GLIS3
  hgvsc: ENST00000473846.1:n.356-7112C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.389-52C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418671
  ensembl transcript: ENST00000462164
  gene symbol: GLIS3
  hgvsc: ENST00000462164.1:c.-77-52C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418995
  ensembl transcript: ENST00000478315
  gene symbol: GLIS3
  hgvsc: ENST00000478315.1:c.-77-52C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.417-7112C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.389-52C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14929
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9931
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4799
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

9-4285905-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285905
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285905
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 71864
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12479T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+133T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+133T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+133T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+133T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1115T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1203T>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13516T>C
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18316
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16346
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8765
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6269
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3824
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-4285906-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285906
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285906
    reference: chr 9
allele count: 1
allele frequency: 1.389429222475407e-5
allele num: 71972
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+132A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1202A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+132A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12478A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13515A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+132A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1114A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+132A>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8656
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3770
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5480
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-4285907-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285907
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285907
    reference: chr 9
allele count: 1
allele frequency: 1.390511151899438e-5
allele num: 71916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1113G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+131G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+131G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1201G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+131G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+131G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12477G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13514G>C
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19374
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5950
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

9-4285909-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285909
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285909
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 72704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13512A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+129A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1199A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+129A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+129A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+129A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12475A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1111A>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18414
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5386
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5561
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

9-4285913-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285913
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285913
    reference: chr 9
allele count: 11
allele frequency: 1.491727691890426e-4
allele num: 73740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+125C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1107C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12471C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+125C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1195C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13508C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+125C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+125C>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16344
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17599
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

9-4285915-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285915
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285915
    reference: chr 9
allele count: 1
allele frequency: 1.336862650731264e-5
allele num: 74802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+123C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13506C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1193C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12469C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+123C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+123C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1105C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+123C>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18149
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4810
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

9-4285915-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285915
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285915
    reference: chr 9
allele count: 1
allele frequency: 1.336862650731264e-5
allele num: 74802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+123C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+123C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12469C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1193C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+123C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13506C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1105C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+123C>A
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18149
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

9-4285921-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285921
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285921
    reference: chr 9
allele count: 15
allele frequency: 1.89379592455117e-4
allele num: 79206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+117G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13500G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1187G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1099G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+117G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12463G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+117G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+117G>C
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22478
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10971
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5061
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16340
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-4285924-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285924
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285924
    reference: chr 9
allele count: 45
allele frequency: 5.463817387081107e-4
allele num: 82360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+114G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+114G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1184G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12460G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+114G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1096G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+114G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13497G>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8795
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 26052
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15532
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4004
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

9-4285925-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285925
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285925
    reference: chr 9
allele count: 1
allele frequency: 1.195943360122465e-5
allele num: 83616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1183A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1095A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13496A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+113A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12459A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+113A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+113A>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+113A>C
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14879
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

9-4285926-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285926
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285926
    reference: chr 9
allele count: 1
allele frequency: 1.185339718363283e-5
allele num: 84364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1094A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+112A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+112A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12458A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1182A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13495A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+112A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+112A>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25675
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-4285931-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285931
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285931
    reference: chr 9
allele count: 1
allele frequency: 1.107051920735082e-5
allele num: 90330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12453G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+107G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+107G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+107G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1089G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1177G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+107G>C
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13490G>C
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29925
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/9-4285932-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285932
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285932
    reference: chr 9
allele count: 24
allele frequency: 2.623811085601837e-4
allele num: 91470
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+106G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+106G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13489G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12452G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+106G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1088G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+106G>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1176G>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11646
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33011
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

9-4285933-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285933
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285933
    reference: chr 9
allele count: 1
allele frequency: 1.079517239890321e-5
allele num: 92634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+105A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+105A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12451A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+105A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1087A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1175A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+105A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13488A>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11017
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

9-4285933-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285933
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285933
    reference: chr 9
allele count: 4
allele frequency: 4.318068959561284e-5
allele num: 92634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+105A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1175A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+105A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1087A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+105A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12451A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13488A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+105A>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

9-4285934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285934
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285934
    reference: chr 9
allele count: 2
allele frequency: 2.132741852926122e-5
allele num: 93776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1086C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+104C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12450C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13487C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+104C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1174C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+104C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+104C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34176
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/9-4285937-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285937
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285937
    reference: chr 9
allele count: 1
allele frequency: 1.026377912347326e-5
allele num: 97430
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12447T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+101T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1083T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+101T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1171T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+101T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+101T>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13484T>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

9-4285940-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285940
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285940
    reference: chr 9
allele count: 7
allele frequency: 6.953964753332936e-5
allele num: 100662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1080C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13481C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+98C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1168C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+98C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12444C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+98C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+98C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38120
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7477
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4475
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

9-4285943-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285943
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285943
    reference: chr 9
allele count: 1
allele frequency: 9.699132897518961e-6
allele num: 103102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+95A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13478A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1165A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12441A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+95A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+95A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+95A>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1077A>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39426
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

9-4285946-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285946
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285946
    reference: chr 9
allele count: 1
allele frequency: 9.494692466910997e-6
allele num: 105322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+92A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1162A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13475A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+92A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12438A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1074A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+92A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+92A>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5488
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

9-4285947-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285947
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285947
    reference: chr 9
allele count: 1
allele frequency: 9.445189564954569e-6
allele num: 105874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12437C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1161C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1073C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+91C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+91C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13474C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+91C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+91C>A
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

9-4285948-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285948
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285948
    reference: chr 9
allele count: 5
allele frequency: 4.704199909679362e-5
allele num: 106288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13473A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12436A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+90A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1072A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+90A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1160A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+90A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+90A>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5004
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

9-4285949-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285949
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285948
    reference: chr 9
allele count: 1
allele frequency: 9.366453111535724e-6
allele num: 106764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1070delA
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1158delA
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+88delA
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13471delA
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+88delA
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+88delA
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12434delA
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+88delA
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7287
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: AT
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum

9-4285958-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285958
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285958
    reference: chr 9
allele count: 2
allele frequency: 1.813565469713457e-5
allele num: 110280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+80A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1062A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1150A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12426A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+80A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+80A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+80A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13463A>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42068
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

9-4285960-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285960
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285960
    reference: chr 9
allele count: 2
allele frequency: 1.802873780806606e-5
allele num: 110934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+78C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12424C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1060C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1148C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13461C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+78C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+78C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+78C>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

9-4285961-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285961
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285961
    reference: chr 9
allele count: 1
allele frequency: 8.9850488786659e-6
allele num: 111296
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+77C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1059C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12423C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+77C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1147C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+77C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+77C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13460C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5566
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS

9-4285966-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285966
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285966
    reference: chr 9
allele count: 1
allele frequency: 8.892999430848037e-6
allele num: 112448
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1054C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+72C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12418C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+72C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+72C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13455C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+72C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1142C>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42790
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41608
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-4285968-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285968
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285968
    reference: chr 9
allele count: 1
allele frequency: 8.855827134254339e-6
allele num: 112920
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+70A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1140A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13453A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+70A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12416A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1052A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+70A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+70A>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5720
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

9-4285973-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285973
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285973
    reference: chr 9
allele count: 1
allele frequency: 8.796312585764048e-6
allele num: 113684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13448C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+65C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+65C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+65C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12411C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+65C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1047C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1135C>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

9-4285981-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285981
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285981
    reference: chr 9
allele count: 3
allele frequency: 2.619126608580259e-5
allele num: 114542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1039C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+57C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+57C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1127C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13440C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12403C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+57C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+57C>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

9-4285983-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285983
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285983
    reference: chr 9
allele count: 2
allele frequency: 1.742858636735974e-5
allele num: 114754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1037A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+55A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13438A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+55A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1125A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12401A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+55A>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+55A>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

9-4285984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285984
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285984
    reference: chr 9
allele count: 1
allele frequency: 8.705038476270064e-6
allele num: 114876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13437C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1036C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+54C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+54C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12400C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+54C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1124C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+54C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

9-4285985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285985
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285985
    reference: chr 9
allele count: 1
allele frequency: 8.697769891799743e-6
allele num: 114972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1035C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+53C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1123C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12399C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13436C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+53C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+53C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+53C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

9-4285986-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285986
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285986
    reference: chr 9
allele count: 1
allele frequency: 8.57030218885518e-6
allele num: 116682
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+52C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+52C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+52C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1122C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13435C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12398C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1034C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+52C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

9-4285986-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285986
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285986
    reference: chr 9
allele count: 52034
allele frequency: 4.459471040948904e-1
allele num: 116682
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+52C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12398C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1034C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13435C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+52C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1122C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+52C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+52C>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 8.25e1
  variant carriers: 2263
genotype depth: GenotypeDepth
  all individuals: 14384
  bin: 2.25e1
  variant carriers: 510
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 1.25e1
  variant carriers: 698
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 506
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 4.75e1
  variant carriers: 3069
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 5.25e1
  variant carriers: 3579
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 528
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 1028
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 2933
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 2.75e1
  variant carriers: 689
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 5.75e1
  variant carriers: 3962
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 2344
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 6.75e1
  variant carriers: 3986
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 8.75e1
  variant carriers: 1547
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 9.25e1
  variant carriers: 1056
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 6.25e1
  variant carriers: 4028
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 1586
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 7.25e1
  variant carriers: 3364
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 7.75e1
  variant carriers: 2734
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.25e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 7.75e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.75e1
  variant carriers: 138
num of homozygotes: 12190
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-4285986-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285986
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285986
    reference: chr 9
allele count: 1
allele frequency: 8.57030218885518e-6
allele num: 116682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+52C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+52C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1034C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12398C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13435C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+52C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1122C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+52C>A
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

9-4285987-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285987
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285987
    reference: chr 9
allele count: 2
allele frequency: 1.71010329023873e-5
allele num: 116952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+51C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12397C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+51C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1121C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+51C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1033C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13434C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+51C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10536
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

9-4285988-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285988
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285988
    reference: chr 9
allele count: 1
allele frequency: 8.544379507160189e-6
allele num: 117036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+50C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13433C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1032C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1120C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+50C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+50C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+50C>A
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12396C>A
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8107
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5479
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

9-4285990-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285990
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285990
    reference: chr 9
allele count: 5
allele frequency: 4.272700859667413e-5
allele num: 117022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+48C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12394C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+48C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1030C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13431C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+48C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1118C>T
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+48C>T
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18317
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3796
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP

9-4285990-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 4285990
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 4285990
    reference: chr 9
allele count: 1
allele frequency: 8.545401719334827e-6
allele num: 117022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417794
  ensembl transcript: ENST00000477901
  gene symbol: GLIS3
  hgvsc: ENST00000477901.1:c.388+48C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000418005
  ensembl transcript: ENST00000478844
  gene symbol: GLIS3
  hgvsc: ENST00000478844.1:c.-78+12394C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000465708
  gene symbol: GLIS3
  hgvsc: ENST00000465708.1:n.1030C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000417883
  ensembl transcript: ENST00000481827
  gene symbol: GLIS3
  hgvsc: ENST00000481827.1:c.388+48C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000490709
  gene symbol: GLIS3
  hgvsc: ENST00000490709.1:n.416+13431C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107249
  ensembl transcript: ENST00000471664
  gene symbol: GLIS3
  hgvsc: ENST00000471664.1:n.1118C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000371398
  ensembl transcript: ENST00000381971
  gene symbol: GLIS3
  hgvsc: ENST00000381971.3:c.388+48C>G
  variant of: http://identifiers.org/hgnc/28510
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107249
  ensembl protein: ENSP00000419914
  ensembl transcript: ENST00000491889
  gene symbol: GLIS3
  hgvsc: ENST00000491889.1:c.388+48C>G
  variant of: http://identifiers.org/hgnc/28510
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7548
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.473e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

DP
type: SiteQuality
SIO_000300: 1.960616e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.07e-1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37479
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7498
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8287
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.539e0

VQSLOD
type: SiteQuality
SIO_000300: -1.432e0

DP
type: SiteQuality
SIO_000300: 1.954486e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.171e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.467e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.036e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.85e-1

GenotypeQuality
all individuals: 8283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7503
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37467
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 1.729771285796656e-3
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

FS
type: SiteQuality
SIO_000300: 5.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.695e0

QD
type: SiteQuality
SIO_000300: 1.468e1

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

DP
type: SiteQuality
SIO_000300: 1.955458e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7486
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

VQSLOD
type: SiteQuality
SIO_000300: 2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 1.954139e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

QD
type: SiteQuality
SIO_000300: 1.63e1

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37475
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7488
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.102e0

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 1.189e0

DP
type: SiteQuality
SIO_000300: 1.954143e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.58e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7487
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.648856428983279e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.784e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

FS
type: SiteQuality
SIO_000300: 5.86e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.954723e6

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7487
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1340
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.784e0

FS
type: SiteQuality
SIO_000300: 5.86e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.954723e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7477
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 3.112e0

DP
type: SiteQuality
SIO_000300: 1.953797e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.979e0

QD
type: SiteQuality
SIO_000300: 1.331e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7474
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37470
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 1.52e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e-1

DP
type: SiteQuality
SIO_000300: 1.953549e6

GenotypeQuality
all individuals: 2265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7475
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 37482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

FS
type: SiteQuality
SIO_000300: 5.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.953463e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

QD
type: SiteQuality
SIO_000300: 1.363e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7475
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.953463e6

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
SIO_000300: 5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

QD
type: SiteQuality
SIO_000300: 1.363e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 7473
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8278
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37466
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

DP
type: SiteQuality
SIO_000300: 1.953064e6

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.38e-1

FS
type: SiteQuality
SIO_000300: 1.656e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.598e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7471
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 8276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.622140050843541e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.318e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 9.1e0

DP
type: SiteQuality
SIO_000300: 1.952914e6

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7467
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37427
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8266
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.849430113977205e-4
allele num: 66680
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

DP
type: SiteQuality
SIO_000300: 1.952561e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

QD
type: SiteQuality
SIO_000300: 1.34e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.251e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 2401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7447
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999850007499625e-5
allele num: 66670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.391e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.498e0

MQRankSum
type: SiteQuality
SIO_000300: -2.87e0

MQ
type: SiteQuality
SIO_000300: 5.441e1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

DP
type: SiteQuality
SIO_000300: 1.950657e6

FS
type: SiteQuality
SIO_000300: 1.709e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.115e0

GenotypeQuality
all individuals: 8222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7446
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2397
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.948709e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.469e0

MQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

QD
type: SiteQuality
SIO_000300: 9.23e0

VQSLOD
type: SiteQuality
SIO_000300: 2.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7443
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8197
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.162e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.3e-3

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 1.678e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.523e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-1

DP
type: SiteQuality
SIO_000300: 1.946927e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.81e-1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36777
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8106
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7439
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2347
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.492229788720098e-4
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.11e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

FS
type: SiteQuality
SIO_000300: 7.858e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.68e-1

DP
type: SiteQuality
SIO_000300: 1.937951e6

GenotypeQuality
all individuals: 830
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7409
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7164
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.101e0

DP
type: SiteQuality
SIO_000300: 1.863483e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.231e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-3

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

GenotypeQuality
all individuals: 7058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31782
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7408
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 316
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.196744853997128e-4
allele num: 8356
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 9.02e0

VQSLOD
type: SiteQuality
SIO_000300: -6.246e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

DP
type: SiteQuality
SIO_000300: 1.845239e6

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2037
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4377
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1947
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29789
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 57
allele frequency: 8.739918427428011e-4
allele num: 65218
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

FS
type: SiteQuality
SIO_000300: 8.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

QD
type: SiteQuality
SIO_000300: 1.331e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.809113e6

GenotypeQuality
all individuals: 306
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21390
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7391
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5176
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.09377223648795e-5
allele num: 64646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.146000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

DP
type: SiteQuality
SIO_000300: 1.670746e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.275e1

GenotypeQuality
all individuals: 1089
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20503
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3862
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4773
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2876
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7387
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 492
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8066
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.659799e6

VQSLOD
type: SiteQuality
SIO_000300: -4.581e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: -1.485e0

MQ
type: SiteQuality
SIO_000300: 4.238e1

FS
type: SiteQuality
SIO_000300: 2.442e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

QD
type: SiteQuality
SIO_000300: 3.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.89e0

GenotypeQuality
all individuals: 7388
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4406
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3019
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11006
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.240079365079365e-4
allele num: 8064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

QD
type: SiteQuality
SIO_000300: 3.097e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e0

DP
type: SiteQuality
SIO_000300: 1.638307e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.235e0

VQSLOD
type: SiteQuality
SIO_000300: -1.98e0

GenotypeQuality
all individuals: 675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1651
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6311
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5478
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7383
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5762
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2156
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16334
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10936
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.181e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

DP
type: SiteQuality
SIO_000300: 1.597928e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

GenotypeQuality
all individuals: 101
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2220
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6311
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2156
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1651
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5478
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5762
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7383
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 6
allele frequency: 6.171569635877391e-4
allele num: 9722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

DP
type: SiteQuality
SIO_000300: 1.597928e6

QD
type: SiteQuality
SIO_000300: 1.181e1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 1382
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6072
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3703
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6335
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7379
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 481
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.842638658559057e-4
allele num: 10854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.718910246327115e-5
allele num: 63574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.458e1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.563564e6

GenotypeQuality
all individuals: 154
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3385
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3046
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6067
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4014
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3752
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6441
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1582
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.575051189163648e-5
allele num: 63490
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.418e0

MQ
type: SiteQuality
SIO_000300: 5.739e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 3.073e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

DP
type: SiteQuality
SIO_000300: 1.556873e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

GenotypeQuality
all individuals: 635
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5877
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6618
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7386
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 2028
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3268
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10401
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10748
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 2.041858090862685e-3
allele num: 7836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63126
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.483e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

DP
type: SiteQuality
SIO_000300: 1.542123e6

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

GenotypeQuality
all individuals: 5938
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4870
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6777
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3378
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7376
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3489
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5381
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.427767957576732e-5
allele num: 62230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.431e0

QD
type: SiteQuality
SIO_000300: 2.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.431e0

DP
type: SiteQuality
SIO_000300: 1.522646e6

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5503
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

QD
type: SiteQuality
SIO_000300: 9.18e0

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

DP
type: SiteQuality
SIO_000300: 7.37747e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 675
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8712
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16474
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.636157536774398e-5
allele num: 37934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

DP
type: SiteQuality
SIO_000300: 7.4249e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

VQSLOD
type: SiteQuality
SIO_000300: -1.033e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

QD
type: SiteQuality
SIO_000300: 6.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

GenotypeQuality
all individuals: 299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5441
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3740
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16671
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.637965600928564e-5
allele num: 37908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.199e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 7.49991e5

VQSLOD
type: SiteQuality
SIO_000300: -1.973e0

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.098e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

GenotypeQuality
all individuals: 3599
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8341
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

DP
type: SiteQuality
SIO_000300: 7.65195e5

GenotypeQuality
all individuals: 5066
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13018
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7463
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 538
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 10
allele frequency: 2.010454362685967e-3
allele num: 4974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.57360510603253e-5
allele num: 38856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11836
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

QD
type: SiteQuality
SIO_000300: 1.495e1

DP
type: SiteQuality
SIO_000300: 8.05747e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.717e0

GenotypeQuality
all individuals: 17509
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14773
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 520
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6911
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.977066034005536e-4
allele num: 5058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39468
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.245e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

QD
type: SiteQuality
SIO_000300: 1.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 8.29477e5

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

GenotypeQuality
all individuals: 6911
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4810
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1631
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3934
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39468
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.834862385321101e-4
allele num: 5450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

QD
type: SiteQuality
SIO_000300: 1.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.29477e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.245e0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
all individuals: 650
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20093
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12454
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 2.753303964757709e-3
allele num: 5448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

FS
type: SiteQuality
SIO_000300: 2.095e0

DP
type: SiteQuality
SIO_000300: 9.1207e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.521e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

GenotypeQuality
all individuals: 23938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2018
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 9.75e1
variant carriers: 42

GenotypeQuality
all individuals: 508
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

South Asian
type: Population
allele count: 39
allele frequency: 3.054989816700611e-3
allele num: 12766
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.379564057757749e-4
allele num: 43492
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.35e1

FS
type: SiteQuality
SIO_000300: 3.099e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.204e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

DP
type: SiteQuality
SIO_000300: 9.60906e5

GenotypeQuality
all individuals: 262
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3664
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2760
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5408
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.718213058419244e-4
allele num: 5820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: -5.331e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.079e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.432e1

DP
type: SiteQuality
SIO_000300: 9.76849e5

GenotypeQuality
all individuals: 489
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2432
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14565
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2880
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.621796951021732e-4
allele num: 6166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

FS
type: SiteQuality
SIO_000300: 4.247e0

QD
type: SiteQuality
SIO_000300: 1.573e1

DP
type: SiteQuality
SIO_000300: 9.86305e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

GenotypeQuality
all individuals: 502
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 546
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3371
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12004
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083680613435573e-5
allele num: 47992
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

DP
type: SiteQuality
SIO_000300: 1.066977e6

VQSLOD
type: SiteQuality
SIO_000300: -1.258e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.587e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

QD
type: SiteQuality
SIO_000300: 1.651e1

GenotypeQuality
all individuals: 3569
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1892
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30457
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 2132
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.495215311004785e-4
allele num: 6688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5804
num of homozygotes: 0

East Asian
type: Population
allele count: 23
allele frequency: 3.576982892690513e-3
allele num: 6430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

DP
type: SiteQuality
SIO_000300: 1.080961e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.29e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeQuality
all individuals: 232
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.025931928687196e-5
allele num: 49360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.94e-1

FS
type: SiteQuality
SIO_000300: 2.017e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 1.096253e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

QD
type: SiteQuality
SIO_000300: 1.498e1

GenotypeQuality
all individuals: 262
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11017
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2013
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.880599164626242e-4
allele num: 13886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.017e0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

DP
type: SiteQuality
SIO_000300: 1.096253e6

QD
type: SiteQuality
SIO_000300: 1.498e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

GenotypeQuality
all individuals: 231
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10511
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 563
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3824
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.13063320022818e-5
allele num: 14024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.999840012798976e-5
allele num: 50004
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.06e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.44e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.856e0

DP
type: SiteQuality
SIO_000300: 1.110581e6

GenotypeQuality
all individuals: 210
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8970
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.920491645861341e-5
allele num: 52070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7108
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.989e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

MQRankSum
type: SiteQuality
SIO_000300: -1.704e0

QD
type: SiteQuality
SIO_000300: 1.413e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.151948e6

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1016
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.403568520026653e-5
allele num: 54028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14844
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.360914534567229e-4
allele num: 7348
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.934610176049526e-4
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.538e0

VQSLOD
type: SiteQuality
SIO_000300: 3.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

QD
type: SiteQuality
SIO_000300: 1.12e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.190452e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

GenotypeQuality
all individuals: 1817
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37307
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.801607033473859e-5
allele num: 55506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.952e-1

DP
type: SiteQuality
SIO_000300: 1.216115e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

QD
type: SiteQuality
SIO_000300: 1.021e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

GenotypeQuality
all individuals: 658
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 200
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4905
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.34517083669626e-4
allele num: 7434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.801e1

DP
type: SiteQuality
SIO_000300: 1.240981e6

MQRankSum
type: SiteQuality
SIO_000300: 5.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

QD
type: SiteQuality
SIO_000300: 2.146e1

VQSLOD
type: SiteQuality
SIO_000300: -1.771e0

GenotypeQuality
all individuals: 4935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5240
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.748679746791173e-5
allele num: 57186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15490
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.99e0

MQRankSum
type: SiteQuality
SIO_000300: -1.266e0

VQSLOD
type: SiteQuality
SIO_000300: -1.009e0

DP
type: SiteQuality
SIO_000300: 1.247999e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

QD
type: SiteQuality
SIO_000300: 1.818e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4998
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.257544899092761e-5
allele num: 10802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.965000870625109e-5
allele num: 57430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

FS
type: SiteQuality
SIO_000300: 1.765e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 1.432e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

VQSLOD
type: SiteQuality
SIO_000300: 2.72e0

DP
type: SiteQuality
SIO_000300: 1.253491e6

GenotypeQuality
all individuals: 486
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2038
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5075
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38912
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.73238167833137e-5
allele num: 57724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10850
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

DP
type: SiteQuality
SIO_000300: 1.2593e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

QD
type: SiteQuality
SIO_000300: 1.06e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e0

VQSLOD
type: SiteQuality
SIO_000300: 8.03e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

GenotypeQuality
all individuals: 321
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40623
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.338006542492823e-5
allele num: 59916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

DP
type: SiteQuality
SIO_000300: 1.301012e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

GenotypeQuality
all individuals: 40882
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5512
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.790510295434199e-4
allele num: 11170
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.466e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.741e0

DP
type: SiteQuality
SIO_000300: 1.309836e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

QD
type: SiteQuality
SIO_000300: 2.818e1

GenotypeQuality
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1784
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.651636772041093e-5
allele num: 60546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.19e-1

DP
type: SiteQuality
SIO_000300: 1.31428e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.87e0

QD
type: SiteQuality
SIO_000300: 1.393e1

FS
type: SiteQuality
SIO_000300: 3.804e0

GenotypeQuality
all individuals: 1828
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5656
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.631374596234787e-5
allele num: 61298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

MQ
type: SiteQuality
SIO_000300: 5.889e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.363e0

QD
type: SiteQuality
SIO_000300: 1.438e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.327989e6

VQSLOD
type: SiteQuality
SIO_000300: 1.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

GenotypeQuality
all individuals: 1867
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.623640201331385e-5
allele num: 61590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

QD
type: SiteQuality
SIO_000300: 1.295e1

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-1

DP
type: SiteQuality
SIO_000300: 1.334047e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.798e0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5795
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.611863313990974e-5
allele num: 62040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.365e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.345204e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.578e0

QD
type: SiteQuality
SIO_000300: 1.499e1

VQSLOD
type: SiteQuality
SIO_000300: -1.911e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.224e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.632040708896297e-4
allele num: 11398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.005e0

DP
type: SiteQuality
SIO_000300: 1.356141e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
SIO_000300: 2.765e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.549e0

VQSLOD
type: SiteQuality
SIO_000300: -3.04e0

FS
type: SiteQuality
SIO_000300: 1.104e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

GenotypeQuality
all individuals: 789
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2480
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105006105006105e-5
allele num: 16380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.610000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.505e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

DP
type: SiteQuality
SIO_000300: 1.358909e6

GenotypeQuality
all individuals: 5892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2482
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5927624872579e-5
allele num: 62784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.269e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.3604e6

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

FS
type: SiteQuality
SIO_000300: 1.786e0

QD
type: SiteQuality
SIO_000300: 2.255e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

GenotypeQuality
all individuals: 1792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2489
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42241
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5890
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.52114390021296e-4
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.017e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 1.223e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.351e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

DP
type: SiteQuality
SIO_000300: 1.361954e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.442e0

GenotypeQuality
all individuals: 38919
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.148633126579371e-4
allele num: 8706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.99e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

DP
type: SiteQuality
SIO_000300: 2.970301e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 2.194e1

GenotypeQuality
all individuals: 344
bin: 7.5e0
variant carriers: 33

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 70

GenotypeQuality
all individuals: 14739
bin: 6.25e1
variant carriers: 104

GenotypeQuality
all individuals: 232
bin: 2.5e0
variant carriers: 10

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 102

GenotypeQuality
all individuals: 545
bin: 7.25e1
variant carriers: 70

GenotypeQuality
all individuals: 137
bin: 3.25e1
variant carriers: 87

GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 192

GenotypeQuality
all individuals: 38919
bin: 9.75e1
variant carriers: 38741

GenotypeQuality
all individuals: 451
bin: 8.25e1
variant carriers: 135

GenotypeQuality
all individuals: 1843
bin: 6.75e1
variant carriers: 105

GenotypeQuality
all individuals: 128
bin: 1.75e1
variant carriers: 83

Latino
type: Population
allele count: 4284
allele frequency: 3.741484716157205e-1
allele num: 11450
num of homozygotes: 767

South Asian
type: Population
allele count: 7220
allele frequency: 4.388524191587649e-1
allele num: 16452
num of homozygotes: 1645

European (Finnish)
type: Population
allele count: 3202
allele frequency: 4.869221411192214e-1
allele num: 6576
num of homozygotes: 777

East Asian
type: Population
allele count: 4419
allele frequency: 5.260714285714285e-1
allele num: 8400
num of homozygotes: 1182

Other
type: Population
allele count: 380
allele frequency: 4.308390022675737e-1
allele num: 882
num of homozygotes: 86

European (Non-Finnish)
type: Population
allele count: 31531
allele frequency: 4.910147003861966e-1
allele num: 64216
num of homozygotes: 7659

African
type: Population
allele count: 998
allele frequency: 1.146335860326212e-1
allele num: 8706
num of homozygotes: 74

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 2.970301e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

QD
type: SiteQuality
SIO_000300: 2.194e1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.99e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 38919
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 928
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55724430048586e-5
allele num: 64216
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

DP
type: SiteQuality
SIO_000300: 2.970301e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.99e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

QD
type: SiteQuality
SIO_000300: 2.194e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

GenotypeQuality
all individuals: 1167
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3805
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8099
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5489
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3141
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.106168851338759e-5
allele num: 64388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.731e0

DP
type: SiteQuality
SIO_000300: 1.717584e6

QD
type: SiteQuality
SIO_000300: 2.487e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

FS
type: SiteQuality
SIO_000300: 8.672000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.75e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 356
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31168
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552120196187993e-5
allele num: 64428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.717658e6

QD
type: SiteQuality
SIO_000300: 1.324e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.492e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

GenotypeQuality
all individuals: 8109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3131
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5473
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1505
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.039144176999757e-4
allele num: 16452
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.378e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

FS
type: SiteQuality
SIO_000300: 2.937e0

QD
type: SiteQuality
SIO_000300: 1.074e1

MQRankSum
type: SiteQuality
SIO_000300: 4.26e-1

DP
type: SiteQuality
SIO_000300: 1.718561e6