3-52558584-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558584
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558584
    reference: chr 3
allele count: 4
allele frequency: 3.33028057613854e-5
allele num: 120110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.408C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.487C>T
  hgvsp: ENSP00000418780.1:p.Arg163Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1217C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1533C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1576C>T
  hgvsp: ENSP00000406933.2:p.Arg526Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1501C>T
  hgvsp: ENSP00000419547.1:p.Arg501Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1465C>T
  hgvsp: ENSP00000302468.4:p.Arg489Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1452C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1288C>T
  hgvsp: ENSP00000306017.4:p.Arg430Cys
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg526Cys
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ

3-52558585-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558585
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558585
    reference: chr 3
allele count: 11
allele frequency: 9.156899307405435e-5
allele num: 120128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1500C>A
  hgvsp: ENST00000459839.1:c.1500C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.486C>A
  hgvsp: ENST00000463947.1:c.486C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1532C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1464C>A
  hgvsp: ENST00000307076.4:c.1464C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1216C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1575C>A
  hgvsp: ENST00000422318.2:c.1575C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.407C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1287C>A
  hgvsp: ENST00000307092.4:c.1287C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1451C>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg525Arg
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-52558586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558586
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558586
    reference: chr 3
allele count: 2
allele frequency: 1.665029387768694e-5
allele num: 120118
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1574G>A
  hgvsp: ENSP00000406933.2:p.Arg525His
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1286G>A
  hgvsp: ENSP00000306017.4:p.Arg429His
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.485G>A
  hgvsp: ENSP00000418780.1:p.Arg162His
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1499G>A
  hgvsp: ENSP00000419547.1:p.Arg500His
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1463G>A
  hgvsp: ENSP00000302468.4:p.Arg488His
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.406G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1450G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1215G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1531G>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg525His
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

3-52558587-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558587
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558587
    reference: chr 3
allele count: 6
allele frequency: 4.994755506717946e-5
allele num: 120126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1449C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1214C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1462C>T
  hgvsp: ENSP00000302468.4:p.Arg488Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.484C>T
  hgvsp: ENSP00000418780.1:p.Arg162Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1285C>T
  hgvsp: ENSP00000306017.4:p.Arg429Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.405C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1573C>T
  hgvsp: ENSP00000406933.2:p.Arg525Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1498C>T
  hgvsp: ENSP00000419547.1:p.Arg500Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1530C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 24890
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg525Cys
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

3-52558587-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558587
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558587
    reference: chr 3
allele count: 1
allele frequency: 8.324592511196577e-6
allele num: 120126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.405C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1530C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1498C>A
  hgvsp: ENSP00000419547.1:p.Arg500Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1573C>A
  hgvsp: ENSP00000406933.2:p.Arg525Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.484C>A
  hgvsp: ENSP00000418780.1:p.Arg162Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1285C>A
  hgvsp: ENSP00000306017.4:p.Arg429Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1449C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1214C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1462C>A
  hgvsp: ENSP00000302468.4:p.Arg488Ser
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18818
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24890
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg525Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

3-52558594-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558594
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558594
    reference: chr 3
allele count: 1
allele frequency: 8.326256015719971e-6
allele num: 120102
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1491C>G
  hgvsp: ENSP00000419547.1:p.Phe497Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.477C>G
  hgvsp: ENSP00000418780.1:p.Phe159Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1523C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1455C>G
  hgvsp: ENSP00000302468.4:p.Phe485Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1442C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1278C>G
  hgvsp: ENSP00000306017.4:p.Phe426Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1566C>G
  hgvsp: ENSP00000406933.2:p.Phe522Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.398C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1207C>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24883
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe522Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

3-52558600-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558600
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558600
    reference: chr 3
allele count: 2
allele frequency: 1.665528555487084e-5
allele num: 120082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1449C>A
  hgvsp: ENSP00000302468.4:p.Phe483Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1560C>A
  hgvsp: ENSP00000406933.2:p.Phe520Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1485C>A
  hgvsp: ENSP00000419547.1:p.Phe495Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1201C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1272C>A
  hgvsp: ENSP00000306017.4:p.Phe424Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1436C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1517C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.392C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.471C>A
  hgvsp: ENSP00000418780.1:p.Phe157Leu
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe520Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-52558609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558609
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558609
    reference: chr 3
allele count: 1
allele frequency: 8.329723786359244e-6
allele num: 120052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1440C>T
  hgvsp: ENST00000307076.4:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1427C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1551C>T
  hgvsp: ENST00000422318.2:c.1551C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1192C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.462C>T
  hgvsp: ENST00000463947.1:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1263C>T
  hgvsp: ENST00000307092.4:c.1263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1476C>T
  hgvsp: ENST00000459839.1:c.1476C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.383C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1508C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg517Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

3-52558610-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558610
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558610
    reference: chr 3
allele count: 3
allele frequency: 2.49925022493252e-5
allele num: 120036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1191G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1426G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.382G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1439G>A
  hgvsp: ENSP00000302468.4:p.Arg480His
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1475G>A
  hgvsp: ENSP00000419547.1:p.Arg492His
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1550G>A
  hgvsp: ENSP00000406933.2:p.Arg517His
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1262G>A
  hgvsp: ENSP00000306017.4:p.Arg421His
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1507G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.461G>A
  hgvsp: ENSP00000418780.1:p.Arg154His
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg517His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

3-52558611-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558611
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558611
    reference: chr 3
allele count: 8
allele frequency: 6.665888979619045e-5
allele num: 120014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1438C>T
  hgvsp: ENSP00000302468.4:p.Arg480Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.381C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1549C>T
  hgvsp: ENSP00000406933.2:p.Arg517Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1261C>T
  hgvsp: ENSP00000306017.4:p.Arg421Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1506C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1474C>T
  hgvsp: ENSP00000419547.1:p.Arg492Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.460C>T
  hgvsp: ENSP00000418780.1:p.Arg154Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1190C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1425C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg517Cys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-52558616-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558616
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558616
    reference: chr 3
allele count: 1
allele frequency: 8.333194446759221e-6
allele num: 120002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1256A>G
  hgvsp: ENSP00000306017.4:p.Asn419Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1501A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.455A>G
  hgvsp: ENSP00000418780.1:p.Asn152Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.376A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1469A>G
  hgvsp: ENSP00000419547.1:p.Asn490Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1185A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1544A>G
  hgvsp: ENSP00000406933.2:p.Asn515Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1433A>G
  hgvsp: ENSP00000302468.4:p.Asn478Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1420A>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18803
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn515Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

3-52558618-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558618
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558618
    reference: chr 3
allele count: 1
allele frequency: 8.333472224537076e-6
allele num: 119998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1183C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1254C>T
  hgvsp: ENST00000307092.4:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1499C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1467C>T
  hgvsp: ENST00000459839.1:c.1467C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1418C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.374C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.453C>T
  hgvsp: ENST00000463947.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1542C>T
  hgvsp: ENST00000422318.2:c.1542C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1431C>T
  hgvsp: ENST00000307076.4:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu514Leu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-52558625-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558625
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558625
    reference: chr 3
allele count: 1
allele frequency: 8.339031671642289e-6
allele num: 119918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1176G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1460G>A
  hgvsp: ENSP00000419547.1:p.Cys487Tyr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.446G>A
  hgvsp: ENSP00000418780.1:p.Cys149Tyr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1247G>A
  hgvsp: ENSP00000306017.4:p.Cys416Tyr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1424G>A
  hgvsp: ENSP00000302468.4:p.Cys475Tyr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1535G>A
  hgvsp: ENSP00000406933.2:p.Cys512Tyr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1411G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1492G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.367G>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys512Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/3-52558626-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558626
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558626
    reference: chr 3
allele count: 1
allele frequency: 8.340005337603416e-6
allele num: 119904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.445T>G
  hgvsp: ENSP00000418780.1:p.Cys149Gly
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1491T>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1175T>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1459T>G
  hgvsp: ENSP00000419547.1:p.Cys487Gly
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1246T>G
  hgvsp: ENSP00000306017.4:p.Cys416Gly
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1534T>G
  hgvsp: ENSP00000406933.2:p.Cys512Gly
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1423T>G
  hgvsp: ENSP00000302468.4:p.Cys475Gly
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1410T>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.366T>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys512Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

3-52558630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558630
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558630
    reference: chr 3
allele count: 4
allele frequency: 3.336892685531233e-5
allele num: 119872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-3C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.362C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1242C>T
  hgvsp: ENST00000307092.4:c.1242C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.886C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1419C>T
  hgvsp: ENST00000307076.4:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1171C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1406C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1530C>T
  hgvsp: ENST00000422318.2:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-3C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1455C>T
  hgvsp: ENST00000459839.1:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14088
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
hgvs: n.1490-3C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

3-52558640-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558640
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558640
    reference: chr 3
allele count: 2
allele frequency: 1.669365474183263e-5
allele num: 119806
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1161T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1520T>C
  hgvsp: ENSP00000406933.2:p.Met507Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1445T>C
  hgvsp: ENSP00000419547.1:p.Met482Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1396T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.352T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-13T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1409T>C
  hgvsp: ENSP00000302468.4:p.Met470Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1232T>C
  hgvsp: ENSP00000306017.4:p.Met411Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.876T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-13T>C
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14086
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met507Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

3-52558641-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558641
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558641
    reference: chr 3
allele count: 1
allele frequency: 8.347245409015026e-6
allele num: 119800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1408A>G
  hgvsp: ENSP00000302468.4:p.Met470Val
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-14A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.875A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1519A>G
  hgvsp: ENSP00000406933.2:p.Met507Val
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.351A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1444A>G
  hgvsp: ENSP00000419547.1:p.Met482Val
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1395A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1160A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-14A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1231A>G
  hgvsp: ENSP00000306017.4:p.Met411Val
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met507Val
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

3-52558659-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558659
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558659
    reference: chr 3
allele count: 1
allele frequency: 8.368200836820084e-6
allele num: 119500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-32C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.857C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1142C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1426C>T
  hgvsp: ENSP00000419547.1:p.Arg476Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1377C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1501C>T
  hgvsp: ENSP00000406933.2:p.Arg501Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-32C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1390C>T
  hgvsp: ENSP00000302468.4:p.Arg464Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1213C>T
  hgvsp: ENSP00000306017.4:p.Arg405Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.333C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg501Cys
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

3-52558662-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558662
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558662
    reference: chr 3
allele count: 1
allele frequency: 8.36946150884652e-6
allele num: 119482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1374G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1498G>A
  hgvsp: ENSP00000406933.2:p.Val500Met
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.854G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1423G>A
  hgvsp: ENSP00000419547.1:p.Val475Met
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1387G>A
  hgvsp: ENSP00000302468.4:p.Val463Met
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.330G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1210G>A
  hgvsp: ENSP00000306017.4:p.Val404Met
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1139G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-35G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-35G>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18484
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5340
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val500Met
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

3-52558666-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558666
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558666
    reference: chr 3
allele count: 3
allele frequency: 2.512226167347759e-5
allele num: 119416
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.326C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.850C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-39C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1383C>G
  hgvsp: ENST00000307076.4:c.1383C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1135C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1206C>G
  hgvsp: ENST00000307092.4:c.1206C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1419C>G
  hgvsp: ENST00000459839.1:c.1419C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1370C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1494C>G
  hgvsp: ENST00000422318.2:c.1494C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-39C>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg498Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

3-52558666-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558666
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558666
    reference: chr 3
allele count: 1
allele frequency: 8.37408722449253e-6
allele num: 119416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1206C>A
  hgvsp: ENST00000307092.4:c.1206C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1370C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.850C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1383C>A
  hgvsp: ENST00000307076.4:c.1383C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1419C>A
  hgvsp: ENST00000459839.1:c.1419C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-39C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1135C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1494C>A
  hgvsp: ENST00000422318.2:c.1494C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.326C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-39C>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg498Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

3-52558678-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558678
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558678
    reference: chr 3
allele count: 1
allele frequency: 8.383916294979712e-6
allele num: 119276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1194C>T
  hgvsp: ENST00000307092.4:c.1194C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.314C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.838C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1358C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1123C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-51C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1371C>T
  hgvsp: ENST00000307076.4:c.1371C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1482C>T
  hgvsp: ENST00000422318.2:c.1482C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-51C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1407C>T
  hgvsp: ENST00000459839.1:c.1407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr494Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

3-52558686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558686
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558686
    reference: chr 3
allele count: 2
allele frequency: 1.678866429386878e-5
allele num: 119128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1115C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.830C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-59C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1186C>T
  hgvsp: ENSP00000306017.4:p.Pro396Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1474C>T
  hgvsp: ENSP00000406933.2:p.Pro492Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.306C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1399C>T
  hgvsp: ENSP00000419547.1:p.Pro467Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-59C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1350C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1363C>T
  hgvsp: ENSP00000302468.4:p.Pro455Ser
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro492Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

3-52558691-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558691
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558691
    reference: chr 3
allele count: 1
allele frequency: 8.397010664203544e-6
allele num: 119090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1394A>T
  hgvsp: ENSP00000419547.1:p.His465Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1469A>T
  hgvsp: ENSP00000406933.2:p.His490Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-64A>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1110A>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.301A>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1345A>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-64A>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1181A>T
  hgvsp: ENSP00000306017.4:p.His394Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1358A>T
  hgvsp: ENSP00000302468.4:p.His453Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.825A>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His490Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

3-52558691-TGGAAGGTGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558691
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558682
    reference: chr 3
allele count: 1
allele frequency: 8.397010664203544e-6
allele num: 119090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.292_300delGCACCTTCC
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsp: ENSP00000419547.1:p.Arg462_Phe464del
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsp: ENSP00000306017.4:p.Arg391_Phe393del
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsp: ENSP00000406933.2:p.Arg487_Phe489del
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsp: ENSP00000302468.4:p.Arg450_Phe452del
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.816_824delGCACCTTCC
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg487_Phe489del
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: TGGAAGGTGC
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

3-52558698-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558698
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558698
    reference: chr 3
allele count: 2
allele frequency: 1.681718043152885e-5
allele num: 118926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1387A>G
  hgvsp: ENSP00000419547.1:p.Thr463Ala
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.294A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1103A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1351A>G
  hgvsp: ENSP00000302468.4:p.Thr451Ala
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1338A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1462A>G
  hgvsp: ENSP00000406933.2:p.Thr488Ala
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-71A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1174A>G
  hgvsp: ENSP00000306017.4:p.Thr392Ala
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-71A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.818A>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr488Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

3-52558701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558701
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558701
    reference: chr 3
allele count: 1
allele frequency: 8.402937667008386e-6
allele num: 119006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1171C>T
  hgvsp: ENSP00000306017.4:p.Arg391Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1100C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1459C>T
  hgvsp: ENSP00000406933.2:p.Arg487Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.815C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1384C>T
  hgvsp: ENSP00000419547.1:p.Arg462Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1335C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1348C>T
  hgvsp: ENSP00000302468.4:p.Arg450Cys
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-74C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-74C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.291C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24814
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg487Cys
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

3-52558705-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558705
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558705
    reference: chr 3
allele count: 1
allele frequency: 8.405904307185366e-6
allele num: 118964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1344C>A
  hgvsp: ENST00000307076.4:c.1344C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1096C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.811C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1455C>A
  hgvsp: ENST00000422318.2:c.1455C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-78C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.287C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1167C>A
  hgvsp: ENST00000307092.4:c.1167C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1331C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1380C>A
  hgvsp: ENST00000459839.1:c.1380C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-78C>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13946
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24816
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile485Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

3-52558711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558711
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558711
    reference: chr 3
allele count: 4
allele frequency: 3.364228161953944e-5
allele num: 118898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1338C>T
  hgvsp: ENST00000307076.4:c.1338C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-84C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1325C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.281C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1374C>T
  hgvsp: ENST00000459839.1:c.1374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1161C>T
  hgvsp: ENST00000307092.4:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1449C>T
  hgvsp: ENST00000422318.2:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1090C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.805C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-84C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly483Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-52558713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558713
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558713
    reference: chr 3
allele count: 4
allele frequency: 3.365247093267823e-5
allele num: 118862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1336G>A
  hgvsp: ENSP00000302468.4:p.Gly446Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1088G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1323G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-86G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.279G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1447G>A
  hgvsp: ENSP00000406933.2:p.Gly483Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-86G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.803G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1159G>A
  hgvsp: ENSP00000306017.4:p.Gly387Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1372G>A
  hgvsp: ENSP00000419547.1:p.Gly458Ser
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24822
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Gly483Ser
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

3-52558714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558714
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558714
    reference: chr 3
allele count: 1
allele frequency: 8.413542437908056e-6
allele num: 118856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.278C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1158C>T
  hgvsp: ENST00000307092.4:c.1158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1446C>T
  hgvsp: ENST00000422318.2:c.1446C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1322C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1087C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1371C>T
  hgvsp: ENST00000459839.1:c.1371C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-87C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.802C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1335C>T
  hgvsp: ENST00000307076.4:c.1335C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-87C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Phe482Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

3-52558720-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558720
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558720
    reference: chr 3
allele count: 3
allele frequency: 2.525210013299439e-5
allele num: 118802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1365G>A
  hgvsp: ENST00000459839.1:c.1365G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1316G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.796G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1152G>A
  hgvsp: ENST00000307092.4:c.1152G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-93G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-93G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1440G>A
  hgvsp: ENST00000422318.2:c.1440G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1081G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1329G>A
  hgvsp: ENST00000307076.4:c.1329G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.272G>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala480Ala
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

3-52558721-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558721
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558721
    reference: chr 3
allele count: 3
allele frequency: 2.525082486027877e-5
allele num: 118808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1364C>T
  hgvsp: ENSP00000419547.1:p.Ala455Val
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1080C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1151C>T
  hgvsp: ENSP00000306017.4:p.Ala384Val
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1439C>T
  hgvsp: ENSP00000406933.2:p.Ala480Val
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-94C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1328C>T
  hgvsp: ENSP00000302468.4:p.Ala443Val
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.271C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.795C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-94C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1315C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala480Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

3-52558722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558722
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558722
    reference: chr 3
allele count: 1
allele frequency: 8.41651657212113e-6
allele num: 118814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.270G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.794G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1079G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1363G>A
  hgvsp: ENSP00000419547.1:p.Ala455Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1327G>A
  hgvsp: ENSP00000302468.4:p.Ala443Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1438G>A
  hgvsp: ENSP00000406933.2:p.Ala480Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1150G>A
  hgvsp: ENSP00000306017.4:p.Ala384Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1314G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-95G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-95G>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala480Thr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

3-52558723-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558723
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558723
    reference: chr 3
allele count: 1
allele frequency: 8.416799932665601e-6
allele num: 118810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1362T>C
  hgvsp: ENST00000459839.1:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.269T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1078T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1437T>C
  hgvsp: ENST00000422318.2:c.1437T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1149T>C
  hgvsp: ENST00000307092.4:c.1149T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1313T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1326T>C
  hgvsp: ENST00000307076.4:c.1326T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-96T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-96T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.793T>C
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn479Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

3-52558724-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558724
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558724
    reference: chr 3
allele count: 1
allele frequency: 8.418075291265404e-6
allele num: 118792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1148A>G
  hgvsp: ENSP00000306017.4:p.Asn383Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1436A>G
  hgvsp: ENSP00000406933.2:p.Asn479Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1361A>G
  hgvsp: ENSP00000419547.1:p.Asn454Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1077A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1312A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1325A>G
  hgvsp: ENSP00000302468.4:p.Asn442Ser
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.268A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.792A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-97A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-97A>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn479Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

3-52558725-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558725
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558725
    reference: chr 3
allele count: 1
allele frequency: 8.41779184484326e-6
allele num: 118796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-98A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1311A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1147A>G
  hgvsp: ENSP00000306017.4:p.Asn383Asp
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.267A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-98A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1076A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1435A>G
  hgvsp: ENSP00000406933.2:p.Asn479Asp
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1324A>G
  hgvsp: ENSP00000302468.4:p.Asn442Asp
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1360A>G
  hgvsp: ENSP00000419547.1:p.Asn454Asp
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.791A>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn479Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

3-52558726-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558726
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558726
    reference: chr 3
allele count: 1
allele frequency: 8.419209267865562e-6
allele num: 118776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.444-99C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1075C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1359C>G
  hgvsp: ENSP00000419547.1:p.Phe453Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1310C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1434C>G
  hgvsp: ENSP00000406933.2:p.Phe478Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1146C>G
  hgvsp: ENSP00000306017.4:p.Phe382Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1490-99C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.790C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1323C>G
  hgvsp: ENSP00000302468.4:p.Phe441Leu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.266C>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Phe478Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

3-52558731-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558731
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558731
    reference: chr 3
allele count: 1
allele frequency: 8.423464402439436e-6
allele num: 118716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1318C>A
  hgvsp: ENSP00000302468.4:p.Leu440Met
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1305C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+102C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1429C>A
  hgvsp: ENSP00000406933.2:p.Leu477Met
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+102C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1141C>A
  hgvsp: ENSP00000306017.4:p.Leu381Met
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1354C>A
  hgvsp: ENSP00000419547.1:p.Leu452Met
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.785C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1070C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.261C>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu477Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

3-52558735-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558735
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558735
    reference: chr 3
allele count: 1
allele frequency: 8.425025696328374e-6
allele num: 118694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1350G>A
  hgvsp: ENST00000459839.1:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+98G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1066G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.781G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+98G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1314G>A
  hgvsp: ENST00000307076.4:c.1314G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1137G>A
  hgvsp: ENST00000307092.4:c.1137G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1301G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.257G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1425G>A
  hgvsp: ENST00000422318.2:c.1425G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys475Lys
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

3-52558737-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558737
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558737
    reference: chr 3
allele count: 1
allele frequency: 8.426161546369167e-6
allele num: 118678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.255A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1135A>G
  hgvsp: ENSP00000306017.4:p.Lys379Glu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+96A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1299A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.779A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1348A>G
  hgvsp: ENSP00000419547.1:p.Lys450Glu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1423A>G
  hgvsp: ENSP00000406933.2:p.Lys475Glu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1312A>G
  hgvsp: ENSP00000302468.4:p.Lys438Glu
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1064A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+96A>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys475Glu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

3-52558739-G-GTGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558739
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558742
    reference: chr 3
allele count: 1
allele frequency: 8.425877555147369e-6
allele num: 118682
alternate allele: GTGA
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1418_1420dupTCA
  hgvsp: ENSP00000406933.2:p.Ile473dup
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1130_1132dupTCA
  hgvsp: ENSP00000306017.4:p.Ile377dup
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+91_1489+93dupTCA
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1307_1309dupTCA
  hgvsp: ENSP00000302468.4:p.Ile436dup
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+91_443+93dupTCA
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1059_*1061dupTCA
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.250_252dupTCA
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1343_1345dupTCA
  hgvsp: ENSP00000419547.1:p.Ile448dup
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.774_776dupTCA
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1294_1296dupTCA
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile473dup
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/3-52558752-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558752
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558752
    reference: chr 3
allele count: 4
allele frequency: 3.373477718179671e-5
allele num: 118572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+81G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-5G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-5G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-5G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-5G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-5G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-5G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-5G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-5G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+81G>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24824
  bin: 9.75e1
  variant carriers: 4
hgvs: c.1413-5G>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-52558752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558752
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558752
    reference: chr 3
allele count: 2
allele frequency: 1.686738859089836e-5
allele num: 118572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-5G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+81G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-5G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-5G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-5G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-5G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-5G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+81G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-5G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-5G>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1413-5G>A
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-52558753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558753
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558753
    reference: chr 3
allele count: 6
allele frequency: 5.059875189745319e-5
allele num: 118580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-6C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-6C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+80C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-6C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-6C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-6C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-6C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-6C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-6C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+80C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1413-6C>T
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

3-52558753-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558753
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558753
    reference: chr 3
allele count: 1
allele frequency: 8.433125316242199e-6
allele num: 118580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-6C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-6C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-6C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-6C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-6C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+80C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+80C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-6C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-6C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-6C>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1413-6C>G
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-52558756-GGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558756
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558754
    reference: chr 3
allele count: 1
allele frequency: 8.43540169382866e-6
allele num: 118548
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-11_1413-10delTC
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-11_245-10delTC
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+75_1489+76delTC
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-11_1289-10delTC
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-11_1125-10delTC
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-11_*1054-10delTC
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+75_443+76delTC
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-11_1338-10delTC
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-11_769-10delTC
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-11_1302-10delTC
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: GGA
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

3-52558757-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558757
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558758
    reference: chr 3
allele count: 1
allele frequency: 8.43554400823309e-6
allele num: 118546
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-11dupT
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-11dupT
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+75dupT
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-11dupT
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+75dupT
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-11dupT
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-11dupT
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-11dupT
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-11dupT
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-11dupT
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

3-52558763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558763
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558763
    reference: chr 3
allele count: 28
allele frequency: 2.362669816893089e-4
allele num: 118510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-16G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-16G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-16G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-16G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+70G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+70G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-16G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-16G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-16G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-16G>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13842
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18336
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-52558764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558764
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558764
    reference: chr 3
allele count: 1
allele frequency: 8.439530762089629e-6
allele num: 118490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-17C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+69C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-17C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+69C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-17C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-17C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-17C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-17C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-17C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-17C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

3-52558768-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558768
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558768
    reference: chr 3
allele count: 2930
allele frequency: 2.473325229605619e-2
allele num: 118464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+65G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-21G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+65G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-21G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-21G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-21G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-21G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-21G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-21G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-21G>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 5.75e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 4.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 6.75e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 5.25e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 7.25e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 4.75e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 3.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 13714
  bin: 2.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 2.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 9.75e1
  variant carriers: 341
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 6.25e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 3.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.25e1
  variant carriers: 149
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 51
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-52558769-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558769
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558769
    reference: chr 3
allele count: 40
allele frequency: 3.377066342468298e-4
allele num: 118446
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-22C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+64C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-22C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-22C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-22C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-22C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-22C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-22C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+64C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-22C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13831
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/3-52558773-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558773
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558773
    reference: chr 3
allele count: 1
allele frequency: 8.443236123541432e-6
allele num: 118438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-26T>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-26T>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+60T>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+60T>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-26T>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-26T>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-26T>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-26T>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-26T>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-26T>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18401
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-52558782-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558782
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558782
    reference: chr 3
allele count: 1
allele frequency: 8.451227963423086e-6
allele num: 118326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-35C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-35C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-35C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-35C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+51C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-35C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-35C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+51C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-35C>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-35C>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

3-52558787-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558787
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558787
    reference: chr 3
allele count: 1
allele frequency: 8.450228156160216e-6
allele num: 118340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1289-40C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.245-40C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.769-40C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+46C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+46C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1054-40C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1302-40C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1413-40C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1125-40C>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1338-40C>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

3-52558796-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558796
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558796
    reference: chr 3
allele count: 1
allele frequency: 8.458662516282926e-6
allele num: 118222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1124+37G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1053+37G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.244+37G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+37G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+37G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1288+37G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.768+37G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1301+37G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1412+37G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1337+37G>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-52558798-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558798
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558798
    reference: chr 3
allele count: 1
allele frequency: 8.459378066524549e-6
allele num: 118212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1053+35A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+35A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1301+35A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+35A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1288+35A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1412+35A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1337+35A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.768+35A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1124+35A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.244+35A>G
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/3-52558801-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558801
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558801
    reference: chr 3
allele count: 1
allele frequency: 8.461095881138525e-6
allele num: 118188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1288+32G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1053+32G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1412+32G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1337+32G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+32G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.244+32G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.768+32G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1124+32G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+32G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1301+32G>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

3-52558806-ACTCCTGCCCTGGCCCCACCTGCTCACCTCAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558806
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558775
    reference: chr 3
allele count: 2
allele frequency: 1.694742907500932e-5
allele num: 118012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 6899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: ACTCCTGCCCTGGCCCCACCTGCTCACCTCAG
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-52558813-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558813
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558813
    reference: chr 3
allele count: 1
allele frequency: 8.466540232999188e-6
allele num: 118112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1288+20G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1124+20G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1301+20G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.244+20G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1412+20G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+20G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1053+20G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1337+20G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+20G>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.768+20G>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5035
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP

3-52558816-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558816
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558816
    reference: chr 3
allele count: 2
allele frequency: 1.693680876649222e-5
allele num: 118086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1301+17A>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1124+17A>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1288+17A>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+17A>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1412+17A>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1053+17A>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1337+17A>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+17A>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.768+17A>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.244+17A>C
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-52558818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558818
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558818
    reference: chr 3
allele count: 1
allele frequency: 8.470269354565475e-6
allele num: 118060
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1412+15C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1053+15C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+15C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1301+15C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1288+15C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+15C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.768+15C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.244+15C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1337+15C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1124+15C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

3-52558819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558819
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558819
    reference: chr 3
allele count: 1
allele frequency: 8.467400508044031e-6
allele num: 118100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1124+14G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1301+14G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+14G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1053+14G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+14G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1337+14G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1288+14G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.768+14G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1412+14G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.244+14G>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

3-52558824-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558824
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558824
    reference: chr 3
allele count: 1
allele frequency: 8.467543904215143e-6
allele num: 118098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.244+9G>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1301+9G>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1337+9G>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+9G>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1124+9G>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+9G>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1288+9G>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1053+9G>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.768+9G>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1412+9G>C
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

3-52558824-CCTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558824
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558821
    reference: chr 3
allele count: 1
allele frequency: 8.467543904215143e-6
allele num: 118098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.768+6_768+8delCAG
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1412+6_1412+8delCAG
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.443+6_443+8delCAG
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1124+6_1124+8delCAG
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1337+6_1337+8delCAG
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1288+6_1288+8delCAG
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1489+6_1489+8delCAG
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1301+6_1301+8delCAG
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.244+6_244+8delCAG
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1053+6_*1053+8delCAG
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1412+6_1412+8delCAG
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: CCTG
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-52558844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558844
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558844
    reference: chr 3
allele count: 8
allele frequency: 6.771053745239102e-5
allele num: 118150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.757G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1042G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.432G>A
  hgvsp: ENST00000463947.1:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1326G>A
  hgvsp: ENST00000459839.1:c.1326G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1290G>A
  hgvsp: ENST00000307076.4:c.1290G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1401G>A
  hgvsp: ENST00000422318.2:c.1401G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.233G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1113G>A
  hgvsp: ENST00000307092.4:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1277G>A
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1478G>A
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25035
  bin: 9.75e1
  variant carriers: 8
hgvs: p.Arg467Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

3-52558846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558846
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558846
    reference: chr 3
allele count: 1
allele frequency: 8.46510682964819e-6
allele num: 118132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.755C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1476C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.231C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1288C>T
  hgvsp: ENSP00000302468.4:p.Arg430Trp
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1111C>T
  hgvsp: ENSP00000306017.4:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1324C>T
  hgvsp: ENSP00000419547.1:p.Arg442Trp
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.430C>T
  hgvsp: ENSP00000418780.1:p.Arg144Trp
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1399C>T
  hgvsp: ENSP00000406933.2:p.Arg467Trp
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1275C>T
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1040C>T
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg467Trp
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

3-52558851-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558851
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558851
    reference: chr 3
allele count: 1
allele frequency: 8.462814393554721e-6
allele num: 118164
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1394A>G
  hgvsp: ENSP00000406933.2:p.Lys465Arg
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.226A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1270A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1283A>G
  hgvsp: ENSP00000302468.4:p.Lys428Arg
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.425A>G
  hgvsp: ENSP00000418780.1:p.Lys142Arg
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1035A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.750A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1319A>G
  hgvsp: ENSP00000419547.1:p.Lys440Arg
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1471A>G
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1106A>G
  hgvsp: ENSP00000306017.4:p.Lys369Arg
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys465Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

3-52558854-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52558854
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 52558854
    reference: chr 3
allele count: 1
allele frequency: 8.463817181548878e-6
allele num: 118150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000302468
  ensembl transcript: ENST00000307076
  gene symbol: NT5DC2
  hgvsc: ENST00000307076.4:c.1280T>C
  hgvsp: ENSP00000302468.4:p.Met427Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000479024
  gene symbol: NT5DC2
  hgvsc: ENST00000479024.1:n.1468T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000418780
  ensembl transcript: ENST00000463947
  gene symbol: NT5DC2
  hgvsc: ENST00000463947.1:c.422T>C
  hgvsp: ENSP00000418780.1:p.Met141Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419547
  ensembl transcript: ENST00000459839
  gene symbol: NT5DC2
  hgvsc: ENST00000459839.1:c.1316T>C
  hgvsp: ENSP00000419547.1:p.Met439Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000406933
  ensembl transcript: ENST00000422318
  gene symbol: NT5DC2
  hgvsc: ENST00000422318.2:c.1391T>C
  hgvsp: ENSP00000406933.2:p.Met464Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000469616
  gene symbol: NT5DC2
  hgvsc: ENST00000469616.1:n.223T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000466112
  gene symbol: NT5DC2
  hgvsc: ENST00000466112.1:n.747T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000306017
  ensembl transcript: ENST00000307092
  gene symbol: NT5DC2
  hgvsc: ENST00000307092.4:c.1103T>C
  hgvsp: ENSP00000306017.4:p.Met368Thr
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168268
  ensembl protein: ENSP00000419774
  ensembl transcript: ENST00000492555
  gene symbol: NT5DC2
  hgvsc: ENST00000492555.1:c.*1032T>C
  variant of: http://identifiers.org/hgnc/25717
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168268
  ensembl transcript: ENST00000462261
  gene symbol: NT5DC2
  hgvsc: ENST00000462261.1:n.1267T>C
  variant of: http://identifiers.org/hgnc/25717
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13688
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met464Thr
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 18755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24893
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5497
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.567739577940863e-5
allele num: 65678
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.359e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

DP
type: SiteQuality
SIO_000300: 2.494013e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24891
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2559
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.522255373561469e-4
allele num: 65692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.373e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 5.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

DP
type: SiteQuality
SIO_000300: 2.493951e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.21e-1

GenotypeQuality
all individuals: 2554
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24889
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5495
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.044788843893676e-5
allele num: 65686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

FS
type: SiteQuality
SIO_000300: 2.15e0

QD
type: SiteQuality
SIO_000300: 1.226e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 2.49337e6

MQ
type: SiteQuality
SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2069
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5502
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18818
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.423654871546292e-4
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522209029743965e-5
allele num: 65694
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.95e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 5.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.342e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

DP
type: SiteQuality
SIO_000300: 2.493783e6

QD
type: SiteQuality
SIO_000300: 1.313e1

GenotypeQuality
all individuals: 2556
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2069
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5502
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.342e0

FS
type: SiteQuality
SIO_000300: 5.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.95e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

DP
type: SiteQuality
SIO_000300: 2.493783e6

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2544
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18913
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5500
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65680
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.492457e6

FS
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.315886984715146e-4
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65670
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
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MQ
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SIO_000300: 5.957e1

DP
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SIO_000300: 2.491762e6

FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.57e-1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.02e-1

QD
type: SiteQuality
SIO_000300: 1.534e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

BaseQRankSum
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SIO_000300: -2.741e0

VQSLOD
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SIO_000300: -3.149e0

FS
type: SiteQuality
SIO_000300: 2.232e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.569548528605373e-5
allele num: 65652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.651e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

QD
type: SiteQuality
SIO_000300: 7.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.490418e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.95e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.066390420767192e-4
allele num: 65642
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.490413e6

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 1.324e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 1
allele frequency: 1.518833535844471e-4
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65634
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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QD
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VQSLOD
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SIO_000300: 9.91e-1

FS
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.523507724184162e-5
allele num: 65638
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
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FS
type: SiteQuality
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MQRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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African
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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allele frequency: 1.520681265206813e-4
allele num: 6576
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MQ
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524715640533041e-5
allele num: 65586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 9.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.708e0

DP
type: SiteQuality
SIO_000300: 2.486848e6

MQRankSum
type: SiteQuality
SIO_000300: -5.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 2.642e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 2506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24857
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.101281269066504e-5
allele num: 65560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.486425e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

FS
type: SiteQuality
SIO_000300: 4.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.37e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

QD
type: SiteQuality
SIO_000300: 1.177e1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.052316708381662e-5
allele num: 65524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 2.245e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.008e-1

DP
type: SiteQuality
SIO_000300: 2.485033e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.698e1

GenotypeQuality
all individuals: 1937
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.798157946306095e-5
allele num: 10206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65520
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.036e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.993e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.08e-1

DP
type: SiteQuality
SIO_000300: 2.48488e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24839
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variant carriers: 1

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.266e0

QD
type: SiteQuality
SIO_000300: 1.395e1

FS
type: SiteQuality
SIO_000300: 1.6643e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.480024e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.2137e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.561e0

DP
type: SiteQuality
SIO_000300: 2.479382e6

QD
type: SiteQuality
SIO_000300: 2.672e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.593617933484412e-5
allele num: 65308
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.437e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.096e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 1.7368e1

ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.478231e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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DP
type: SiteQuality
SIO_000300: 2.478231e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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South Asian
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allele frequency: 6.085686465433301e-5
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11488
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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MQ
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DP
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 1.008e0

ReadPosRankSum
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SIO_000300: -1.07e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.534354190321294e-5
allele num: 65174
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10020
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Latino
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allele frequency: 8.712319219376198e-5
allele num: 11478
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ClippingRankSum
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MQRankSum
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MQ
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10012
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.534872298624754e-5
allele num: 65152
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
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FS
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MQ
type: SiteQuality
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MQRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: 8.94e-1

DP
type: SiteQuality
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ClippingRankSum
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SIO_000300: -8.3e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.743071291615827e-4
allele num: 11474
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65074
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.535815210713847e-5
allele num: 65112
num of homozygotes: 0

European (Finnish)
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Latino
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num of homozygotes: 0

East Asian
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MQRankSum
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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African
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East Asian
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South Asian
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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East Asian
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Other
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African
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European (Non-Finnish)
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allele frequency: 3.07540902940091e-5
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VQSLOD
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BaseQRankSum
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
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GenotypeQuality
all individuals: 2174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.615242607919756e-5
allele num: 65002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.472077e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

FS
type: SiteQuality
SIO_000300: 1.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.187e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.241e1

GenotypeQuality
all individuals: 914
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 7.5e0
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GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5300
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538461538461538e-5
allele num: 65000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.14e-1

DP
type: SiteQuality
SIO_000300: 2.471995e6

QD
type: SiteQuality
SIO_000300: 1.14e1

FS
type: SiteQuality
SIO_000300: 2.454e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24823
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2443
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 1926
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5294
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.745200698080279e-4
allele num: 11460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539266693347289e-5
allele num: 64966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 8.833e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

DP
type: SiteQuality
SIO_000300: 2.471816e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.574e0

VQSLOD
type: SiteQuality
SIO_000300: -3.273e-1

QD
type: SiteQuality
SIO_000300: 1.56e1

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5305
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24826
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.617515776512236e-5
allele num: 64970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.471523e6

FS
type: SiteQuality
SIO_000300: 8.8e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.96e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1994
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variant carriers: 0

GenotypeQuality
all individuals: 24825
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 433
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variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539029795616843e-5
allele num: 64976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.32e-1

FS
type: SiteQuality
SIO_000300: 2.942e0

MQ
type: SiteQuality
SIO_000300: 5.751e1

VQSLOD
type: SiteQuality
SIO_000300: -1.491e0

DP
type: SiteQuality
SIO_000300: 2.471559e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.262e1

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.612e0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 885
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 1994
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24825
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53907716932927e-5
allele num: 64974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

DP
type: SiteQuality
SIO_000300: 2.471411e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.897e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

FS
type: SiteQuality
SIO_000300: 5.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24825
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 7.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

DP
type: SiteQuality
SIO_000300: 2.47125e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

MQ
type: SiteQuality
SIO_000300: 5.926e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.489e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.856e0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24826
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 33
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.098304671301378e-5
allele num: 16398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.881e1

VQSLOD
type: SiteQuality
SIO_000300: -2.117e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.896e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.177e0

DP
type: SiteQuality
SIO_000300: 2.471199e6

FS
type: SiteQuality
SIO_000300: 5.432e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.329e1

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539266693347289e-5
allele num: 64966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -8.25e-1

QD
type: SiteQuality
SIO_000300: 1.446e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 6.81e-1

DP
type: SiteQuality
SIO_000300: 2.471155e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.735150244584206e-5
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64920
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 2.470353e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.61e0

FS
type: SiteQuality
SIO_000300: 1.804e0

VQSLOD
type: SiteQuality
SIO_000300: 6.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.056e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54054720236628e-5
allele num: 64912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

InbreedingCoeff
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SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 2.469804e6

MQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

VQSLOD
type: SiteQuality
SIO_000300: 9.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.01e-1

FS
type: SiteQuality
SIO_000300: 5.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64894
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.166588894073728e-4
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.183e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 2.469697e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.218e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.886e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.6e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64894
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.733624454148471e-5
allele num: 11450
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.692e1

FS
type: SiteQuality
SIO_000300: 9.62e-1

InbreedingCoeff
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SIO_000300: 8.0e-4

MQRankSum
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ClippingRankSum
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DP
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 3.3e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64814
num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.492839678658749e-4
allele num: 11452
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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DP
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MQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.085753078038695e-5
allele num: 64814
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6552
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African
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allele count: 1
allele frequency: 1.007455168245013e-4
allele num: 9926
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South Asian
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allele count: 2
allele frequency: 1.220554131575735e-4
allele num: 16386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.628058375242973e-5
allele num: 64822
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

FS
type: SiteQuality
SIO_000300: 3.218e0

QD
type: SiteQuality
SIO_000300: 1.238e1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.33e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

DP
type: SiteQuality
SIO_000300: 2.467757e6

GenotypeQuality
all individuals: 1980
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5241
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18545
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24823
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.102770657878677e-5
allele num: 16386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 3.218e0

QD
type: SiteQuality
SIO_000300: 1.238e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

DP
type: SiteQuality
SIO_000300: 2.467757e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.33e-1

GenotypeQuality
all individuals: 745
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24817
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18506
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

DP
type: SiteQuality
SIO_000300: 2.466916e6

FS
type: SiteQuality
SIO_000300: 1.101e0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.92e-1

QD
type: SiteQuality
SIO_000300: 1.236e1

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.928e0

MQ
type: SiteQuality
SIO_000300: 6.039e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
all individuals: 620
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24817
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5240
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18433
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16767865483419e-4
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.974e0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

DP
type: SiteQuality
SIO_000300: 2.466484e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.034e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.59e-1

GenotypeQuality
all individuals: 760
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24827
bin: 9.75e1
variant carriers: 28

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54354335813293e-5
allele num: 64786
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.622025010084712e-3
allele num: 9916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.107243190423842e-5
allele num: 16374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

DP
type: SiteQuality
SIO_000300: 2.466529e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
all individuals: 24804
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18393
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5199
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.009896990506968e-4
allele num: 9902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.465335e6

VQSLOD
type: SiteQuality
SIO_000300: 9.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

FS
type: SiteQuality
SIO_000300: 5.683e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.447e0

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

GenotypeQuality
all individuals: 138
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 624
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1290
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2058
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5068
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 18118
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 25677
bin: 9.75e1
variant carriers: 2868

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1799
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1878
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 6

Other
type: Population
allele count: 21
allele frequency: 2.408256880733945e-2
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2294
allele frequency: 3.54252887763296e-2
allele num: 64756
num of homozygotes: 41

European (Finnish)
type: Population
allele count: 175
allele frequency: 2.670125114433933e-2
allele num: 6554
num of homozygotes: 4

African
type: Population
allele count: 76
allele frequency: 7.675217127852959e-3
allele num: 9902
num of homozygotes: 0

Latino
type: Population
allele count: 216
allele frequency: 1.887781856318825e-2
allele num: 11442
num of homozygotes: 5

East Asian
type: Population
allele count: 1
allele frequency: 1.16795141322121e-4
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 147
allele frequency: 8.976551050317538e-3
allele num: 16376
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.94e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

QD
type: SiteQuality
SIO_000300: 1.389e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

DP
type: SiteQuality
SIO_000300: 2.506419e6

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2400
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24970
bin: 9.75e1
variant carriers: 39

South Asian
type: Population
allele count: 39
allele frequency: 2.38124313102943e-3
allele num: 16378
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544687818591863e-5
allele num: 64738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

QD
type: SiteQuality
SIO_000300: 1.391e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

DP
type: SiteQuality
SIO_000300: 2.471605e6

GenotypeQuality
all individuals: 157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24945
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2398
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105006105006105e-5
allele num: 16380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

MQ
type: SiteQuality
SIO_000300: 5.847e1

VQSLOD
type: SiteQuality
SIO_000300: -1.344e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.44e-1

QD
type: SiteQuality
SIO_000300: 1.046e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e-1

DP
type: SiteQuality
SIO_000300: 2.47014e6

GenotypeQuality
all individuals: 1961
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 693
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546503355912282e-5
allele num: 64662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 1.312e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.361e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: -2.968e-1

FS
type: SiteQuality
SIO_000300: 9.795999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.424e0

DP
type: SiteQuality
SIO_000300: 2.468563e6

GenotypeQuality
all individuals: 1344
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 128
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GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1899
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546312045770837e-5
allele num: 64670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.0541e1

VQSLOD
type: SiteQuality
SIO_000300: -1.796e0

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

MQ
type: SiteQuality
SIO_000300: 5.792e1

QD
type: SiteQuality
SIO_000300: 1.28e1

DP
type: SiteQuality
SIO_000300: 2.46839e6

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
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GenotypeQuality
all individuals: 2092
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 17990
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variant carriers: 0

GenotypeQuality
all individuals: 159
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variant carriers: 0

GenotypeQuality
all individuals: 1898
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variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
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variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1350
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548275221403357e-5
allele num: 64588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.212e0

DP
type: SiteQuality
SIO_000300: 2.46427e6

QD
type: SiteQuality
SIO_000300: 1.057e1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.09e-1

GenotypeQuality
all individuals: 234
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2097
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variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 157
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GenotypeQuality
all individuals: 821
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 17970
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1896
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variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548467017652524e-5
allele num: 64580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.025e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 1.191e1

DP
type: SiteQuality
SIO_000300: 2.463723e6

GenotypeQuality
all individuals: 732
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
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variant carriers: 0

GenotypeQuality
all individuals: 277
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variant carriers: 0

GenotypeQuality
all individuals: 2369
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5020
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.015228426395939e-4
allele num: 9850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.66e-1

QD
type: SiteQuality
SIO_000300: 1.296e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.462707e6

FS
type: SiteQuality
SIO_000300: 9.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.898e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.05e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
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variant carriers: 0

GenotypeQuality
all individuals: 2360
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GenotypeQuality
all individuals: 719
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GenotypeQuality
all individuals: 17818
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1953
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variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.102410573015233e-5
allele num: 64466
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.757e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.971e-1

DP
type: SiteQuality
SIO_000300: 2.460764e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55048375093029e-5
allele num: 64496
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.125e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.814e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.219e0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.701e0

MQ
type: SiteQuality
SIO_000300: 5.784e1

DP
type: SiteQuality
SIO_000300: 2.460537e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 1969
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variant carriers: 0

GenotypeQuality
all individuals: 17891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 71
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4991
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variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.101929400086854e-5
allele num: 64476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

FS
type: SiteQuality
SIO_000300: 1.0757e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.291e0

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.041e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

DP
type: SiteQuality
SIO_000300: 2.459804e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1969
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550724188195888e-5
allele num: 64486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.45962e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

QD
type: SiteQuality
SIO_000300: 1.373e1

FS
type: SiteQuality
SIO_000300: 4.522e0

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.65e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.861e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.550820383983127e-5
allele num: 64482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 1.2734e1

DP
type: SiteQuality
SIO_000300: 2.459961e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQ
type: SiteQuality
SIO_000300: 5.929e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.616e0

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.713e0

QD
type: SiteQuality
SIO_000300: 1.192e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55077228459773e-5
allele num: 64484
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.459558e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 6.904e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

QD
type: SiteQuality
SIO_000300: 1.622e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55077228459773e-5
allele num: 64484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

FS
type: SiteQuality
SIO_000300: 6.904e0

DP
type: SiteQuality
SIO_000300: 2.459558e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 1.622e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.240425465934816e-4
allele num: 64494
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.265e1

MQRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.396e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: 4.88e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64488
num of homozygotes: 0

European (Finnish)
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allele num: 6574
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East Asian
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allele num: 8546
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MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64508
num of homozygotes: 0

Latino
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allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

ReadPosRankSum
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ClippingRankSum
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FS
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DP
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MQRankSum
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BaseQRankSum
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QD
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MQ
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0