3-3081712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081712
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081712
    reference: chr 3
allele count: 4
allele frequency: 3.306058351929912e-5
allele num: 120990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1180-9C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1359-9C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.645G>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2164-9C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2164-9C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2164-9C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.405C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1507-9C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1180-9C>T
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7923
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4773
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

3-3081714-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081714
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081714
    reference: chr 3
allele count: 11
allele frequency: 9.084302325581395e-5
allele num: 121088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2164-7T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.407T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1359-7T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.643A>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1180-7T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1180-7T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1507-7T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2164-7T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2164-7T>C
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21336
  bin: 6.25e1
  variant carriers: 0
hgvs: c.2164-7T>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-3081717-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081717
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081717
    reference: chr 3
allele count: 4
allele frequency: 3.300711303285858e-5
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2164-4C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1507-4C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1359-4C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1180-4C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2164-4C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2164-4C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1180-4C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.640G>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.410C>T
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4796
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
hgvs: c.2164-4C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

3-3081718-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081718
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081718
    reference: chr 3
allele count: 4
allele frequency: 3.300602359930687e-5
allele num: 121190
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.639G>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2164-3C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1180-3C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1180-3C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1507-3C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1359-3C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2164-3C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2164-3C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.411C>G
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12704
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15474
  bin: 9.75e1
  variant carriers: 4
hgvs: c.2164-3C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

3-3081721-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081721
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081721
    reference: chr 3
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.636T>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1180A>G
  hgvsp: ENSP00000392077.2:p.Thr394Ala
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2164A>G
  hgvsp: ENSP00000380602.1:p.Thr722Ala
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1359A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1507A>G
  hgvsp: ENSP00000351267.3:p.Thr503Ala
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2164A>G
  hgvsp: ENSP00000413642.1:p.Thr722Ala
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1180A>G
  hgvsp: ENSP00000380600.2:p.Thr394Ala
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2164A>G
  hgvsp: ENSP00000396010.1:p.Thr722Ala
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.414A>G
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr722Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-3081722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081722
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081722
    reference: chr 3
allele count: 2
allele frequency: 1.649484536082474e-5
allele num: 121250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1181C>T
  hgvsp: ENSP00000392077.2:p.Thr394Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2165C>T
  hgvsp: ENSP00000396010.1:p.Thr722Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.415C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1508C>T
  hgvsp: ENSP00000351267.3:p.Thr503Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1181C>T
  hgvsp: ENSP00000380600.2:p.Thr394Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2165C>T
  hgvsp: ENSP00000380602.1:p.Thr722Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2165C>T
  hgvsp: ENSP00000413642.1:p.Thr722Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.635G>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1360C>T
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr722Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-3081724-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081724
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081724
    reference: chr 3
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1183G>T
  hgvsp: ENSP00000392077.2:p.Val395Phe
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2167G>T
  hgvsp: ENSP00000380602.1:p.Val723Phe
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1510G>T
  hgvsp: ENSP00000351267.3:p.Val504Phe
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.633C>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.417G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2167G>T
  hgvsp: ENSP00000413642.1:p.Val723Phe
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1183G>T
  hgvsp: ENSP00000380600.2:p.Val395Phe
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2167G>T
  hgvsp: ENSP00000396010.1:p.Val723Phe
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1362G>T
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7216
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val723Phe
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

3-3081729-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081729
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081729
    reference: chr 3
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2172T>G
  hgvsp: ENST00000397461.1:c.2172T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2172T>G
  hgvsp: ENST00000427331.1:c.2172T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1367T>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2172T>G
  hgvsp: ENST00000418658.1:c.2172T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.628A>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1188T>G
  hgvsp: ENST00000448906.2:c.1188T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1515T>G
  hgvsp: ENST00000358480.3:c.1515T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1188T>G
  hgvsp: ENST00000397459.2:c.1188T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.422T>G
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro724Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

3-3081740-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081740
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081740
    reference: chr 3
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1526A>G
  hgvsp: ENSP00000351267.3:p.Gln509Arg
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.433A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2183A>G
  hgvsp: ENSP00000396010.1:p.Gln728Arg
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1199A>G
  hgvsp: ENSP00000380600.2:p.Gln400Arg
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1199A>G
  hgvsp: ENSP00000392077.2:p.Gln400Arg
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2183A>G
  hgvsp: ENSP00000380602.1:p.Gln728Arg
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2183A>G
  hgvsp: ENSP00000413642.1:p.Gln728Arg
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1378A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.617T>C
  variant of: http://identifiers.org/hgnc/39985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15548
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln728Arg
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-3081744-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081744
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081744
    reference: chr 3
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1530T>C
  hgvsp: ENST00000358480.3:c.1530T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2187T>C
  hgvsp: ENST00000397461.1:c.2187T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1203T>C
  hgvsp: ENST00000397459.2:c.1203T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1203T>C
  hgvsp: ENST00000448906.2:c.1203T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.613A>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.437T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1382T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2187T>C
  hgvsp: ENST00000427331.1:c.2187T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2187T>C
  hgvsp: ENST00000418658.1:c.2187T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4011
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15549
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn729Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-3081747-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081747
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081747
    reference: chr 3
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2190T>C
  hgvsp: ENST00000418658.1:c.2190T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2190T>C
  hgvsp: ENST00000427331.1:c.2190T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1385T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1533T>C
  hgvsp: ENST00000358480.3:c.1533T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.440T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2190T>C
  hgvsp: ENST00000397461.1:c.2190T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1206T>C
  hgvsp: ENST00000448906.2:c.1206T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.610A>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1206T>C
  hgvsp: ENST00000397459.2:c.1206T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly730Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

3-3081749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081749
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081749
    reference: chr 3
allele count: 3
allele frequency: 2.471536142096851e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.608C>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2192G>A
  hgvsp: ENSP00000413642.1:p.Arg731Gln
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2192G>A
  hgvsp: ENSP00000380602.1:p.Arg731Gln
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1208G>A
  hgvsp: ENSP00000392077.2:p.Arg403Gln
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1535G>A
  hgvsp: ENSP00000351267.3:p.Arg512Gln
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1208G>A
  hgvsp: ENSP00000380600.2:p.Arg403Gln
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1387G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.442G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2192G>A
  hgvsp: ENSP00000396010.1:p.Arg731Gln
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7229
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21229
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg731Gln
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

3-3081750-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081750
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081750
    reference: chr 3
allele count: 49125
allele frequency: 4.047874093605801e-1
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2193A>T
  hgvsp: ENST00000418658.1:c.2193A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2193A>T
  hgvsp: ENST00000427331.1:c.2193A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1536A>T
  hgvsp: ENST00000358480.3:c.1536A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1209A>T
  hgvsp: ENST00000397459.2:c.1209A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1209A>T
  hgvsp: ENST00000448906.2:c.1209A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1388A>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2193A>T
  hgvsp: ENST00000397461.1:c.2193A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.443A>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.607T>A
  variant of: http://identifiers.org/hgnc/39985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 5.25e1
  variant carriers: 1715
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 6.25e1
  variant carriers: 2686
genotype depth: GenotypeDepth
  all individuals: 13912
  bin: 9.75e1
  variant carriers: 12443
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 2.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 4.75e1
  variant carriers: 1215
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 7.25e1
  variant carriers: 3174
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 8.75e1
  variant carriers: 2513
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 7.75e1
  variant carriers: 3138
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 3.25e1
  variant carriers: 193
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 9.25e1
  variant carriers: 2168
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.25e1
  variant carriers: 729
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 5.75e1
  variant carriers: 2180
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 6.75e1
  variant carriers: 2996
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 3.75e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 8.25e1
  variant carriers: 2865
genotype quality: GenotypeQuality
  all individuals: 6866
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 9.25e1
  variant carriers: 43
hgvs: p.Arg731Arg
num of homozygotes: 10599
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

3-3081752-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081752
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081752
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1538G>C
  hgvsp: ENSP00000351267.3:p.Gly513Ala
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1211G>C
  hgvsp: ENSP00000392077.2:p.Gly404Ala
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2195G>C
  hgvsp: ENSP00000413642.1:p.Gly732Ala
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2195G>C
  hgvsp: ENSP00000380602.1:p.Gly732Ala
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1390G>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1211G>C
  hgvsp: ENSP00000380600.2:p.Gly404Ala
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2195G>C
  hgvsp: ENSP00000396010.1:p.Gly732Ala
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.605C>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.445G>C
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly732Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

3-3081762-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081762
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081762
    reference: chr 3
allele count: 179
allele frequency: 1.474367422245651e-3
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1400T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.455T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.595A>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1548T>C
  hgvsp: ENST00000358480.3:c.1548T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1221T>C
  hgvsp: ENST00000448906.2:c.1221T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1221T>C
  hgvsp: ENST00000397459.2:c.1221T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2205T>C
  hgvsp: ENST00000418658.1:c.2205T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2205T>C
  hgvsp: ENST00000427331.1:c.2205T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2205T>C
  hgvsp: ENST00000397461.1:c.2205T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13539
  bin: 9.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr735Tyr
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

3-3081764-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081764
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081764
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.593A>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2207T>A
  hgvsp: ENSP00000380602.1:p.Val736Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.457T>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1223T>A
  hgvsp: ENSP00000392077.2:p.Val408Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1223T>A
  hgvsp: ENSP00000380600.2:p.Val408Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2207T>A
  hgvsp: ENSP00000413642.1:p.Val736Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1550T>A
  hgvsp: ENSP00000351267.3:p.Val517Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2207T>A
  hgvsp: ENSP00000396010.1:p.Val736Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1402T>A
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val736Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-3081768-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081768
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081768
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1406G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1554G>A
  hgvsp: ENST00000358480.3:c.1554G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2211G>A
  hgvsp: ENST00000418658.1:c.2211G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2211G>A
  hgvsp: ENST00000397461.1:c.2211G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1227G>A
  hgvsp: ENST00000448906.2:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2211G>A
  hgvsp: ENST00000427331.1:c.2211G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1227G>A
  hgvsp: ENST00000397459.2:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.589C>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.461G>A
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val737Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

3-3081775-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081775
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081775
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1234C>T
  hgvsp: ENSP00000380600.2:p.Arg412Trp
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1234C>T
  hgvsp: ENSP00000392077.2:p.Arg412Trp
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2218C>T
  hgvsp: ENSP00000413642.1:p.Arg740Trp
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2218C>T
  hgvsp: ENSP00000380602.1:p.Arg740Trp
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.468C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1561C>T
  hgvsp: ENSP00000351267.3:p.Arg521Trp
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1413C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.582G>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2218C>T
  hgvsp: ENSP00000396010.1:p.Arg740Trp
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13532
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6848
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg740Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

3-3081776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081776
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081776
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1235G>A
  hgvsp: ENSP00000380600.2:p.Arg412Gln
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2219G>A
  hgvsp: ENSP00000380602.1:p.Arg740Gln
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2219G>A
  hgvsp: ENSP00000413642.1:p.Arg740Gln
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2219G>A
  hgvsp: ENSP00000396010.1:p.Arg740Gln
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1562G>A
  hgvsp: ENSP00000351267.3:p.Arg521Gln
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.581C>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1235G>A
  hgvsp: ENSP00000392077.2:p.Arg412Gln
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.469G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1414G>A
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13532
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44478
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg740Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS

3-3081776-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081776
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081776
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1235G>T
  hgvsp: ENSP00000380600.2:p.Arg412Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.469G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2219G>T
  hgvsp: ENSP00000413642.1:p.Arg740Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.581C>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1414G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1235G>T
  hgvsp: ENSP00000392077.2:p.Arg412Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1562G>T
  hgvsp: ENSP00000351267.3:p.Arg521Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2219G>T
  hgvsp: ENSP00000380602.1:p.Arg740Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2219G>T
  hgvsp: ENSP00000396010.1:p.Arg740Leu
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg740Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-3081777-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081777
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081777
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1236G>T
  hgvsp: ENST00000448906.2:c.1236G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1236G>T
  hgvsp: ENST00000397459.2:c.1236G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2220G>T
  hgvsp: ENST00000418658.1:c.2220G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1563G>T
  hgvsp: ENST00000358480.3:c.1563G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2220G>T
  hgvsp: ENST00000427331.1:c.2220G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.470G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.580C>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1415G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2220G>T
  hgvsp: ENST00000397461.1:c.2220G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44479
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg740Arg
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

3-3081783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081783
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081783
    reference: chr 3
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1242C>T
  hgvsp: ENST00000397459.2:c.1242C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1421C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.574G>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2226C>T
  hgvsp: ENST00000418658.1:c.2226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2226C>T
  hgvsp: ENST00000427331.1:c.2226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2226C>T
  hgvsp: ENST00000397461.1:c.2226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1569C>T
  hgvsp: ENST00000358480.3:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.476C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1242C>T
  hgvsp: ENST00000448906.2:c.1242C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13533
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr742Tyr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

3-3081783-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081783
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081782
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2228delG
  hgvsp: ENSP00000413642.1:p.Gly743ValfsTer3
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.573delC
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2228delG
  hgvsp: ENSP00000396010.1:p.Gly743ValfsTer3
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1244delG
  hgvsp: ENSP00000380600.2:p.Gly415ValfsTer3
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1571delG
  hgvsp: ENSP00000351267.3:p.Gly524ValfsTer3
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1244delG
  hgvsp: ENSP00000392077.2:p.Gly415ValfsTer3
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2228delG
  hgvsp: ENSP00000380602.1:p.Gly743ValfsTer3
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1423delG
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.478delG
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13533
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly743ValfsTer3
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: CG
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

3-3081786-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081786
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081786
    reference: chr 3
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1424T>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.571A>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1572T>A
  hgvsp: ENST00000358480.3:c.1572T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1245T>A
  hgvsp: ENST00000448906.2:c.1245T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2229T>A
  hgvsp: ENST00000427331.1:c.2229T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.479T>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2229T>A
  hgvsp: ENST00000418658.1:c.2229T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1245T>A
  hgvsp: ENST00000397459.2:c.1245T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2229T>A
  hgvsp: ENST00000397461.1:c.2229T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13535
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly743Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

3-3081794-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081794
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081794
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1253T>C
  hgvsp: ENSP00000380600.2:p.Ile418Thr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.487T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.563A>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2237T>C
  hgvsp: ENSP00000413642.1:p.Ile746Thr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1253T>C
  hgvsp: ENSP00000392077.2:p.Ile418Thr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2237T>C
  hgvsp: ENSP00000396010.1:p.Ile746Thr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1432T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2237T>C
  hgvsp: ENSP00000380602.1:p.Ile746Thr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1580T>C
  hgvsp: ENSP00000351267.3:p.Ile527Thr
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13534
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6847
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile746Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

3-3081811-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081811
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081811
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2254C>G
  hgvsp: ENSP00000380602.1:p.Leu752Val
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1449C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2254C>G
  hgvsp: ENSP00000413642.1:p.Leu752Val
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.546G>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2254C>G
  hgvsp: ENSP00000396010.1:p.Leu752Val
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1270C>G
  hgvsp: ENSP00000380600.2:p.Leu424Val
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1597C>G
  hgvsp: ENSP00000351267.3:p.Leu533Val
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1270C>G
  hgvsp: ENSP00000392077.2:p.Leu424Val
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.504C>G
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13534
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu752Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

3-3081818-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081818
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081818
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1277C>T
  hgvsp: ENSP00000380600.2:p.Ser426Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1604C>T
  hgvsp: ENSP00000351267.3:p.Ser535Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1277C>T
  hgvsp: ENSP00000392077.2:p.Ser426Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2261C>T
  hgvsp: ENSP00000380602.1:p.Ser754Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1456C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2261C>T
  hgvsp: ENSP00000413642.1:p.Ser754Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2261C>T
  hgvsp: ENSP00000396010.1:p.Ser754Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.539G>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.511C>T
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13534
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser754Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

3-3081821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081821
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081821
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.514C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2264C>T
  hgvsp: ENSP00000413642.1:p.Ala755Val
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2264C>T
  hgvsp: ENSP00000396010.1:p.Ala755Val
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1280C>T
  hgvsp: ENSP00000380600.2:p.Ala427Val
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2264C>T
  hgvsp: ENSP00000380602.1:p.Ala755Val
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1459C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1607C>T
  hgvsp: ENSP00000351267.3:p.Ala536Val
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1280C>T
  hgvsp: ENSP00000392077.2:p.Ala427Val
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.536G>A
  variant of: http://identifiers.org/hgnc/39985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13535
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala755Val
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

3-3081825-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081825
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081825
    reference: chr 3
allele count: 108958
allele frequency: 8.97482784751738e-1
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2268T>C
  hgvsp: ENST00000427331.1:c.2268T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.532A>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2268T>C
  hgvsp: ENST00000397461.1:c.2268T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1463T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.518T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1611T>C
  hgvsp: ENST00000358480.3:c.1611T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1284T>C
  hgvsp: ENST00000397459.2:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1284T>C
  hgvsp: ENST00000448906.2:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2268T>C
  hgvsp: ENST00000418658.1:c.2268T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 311
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.75e1
  variant carriers: 2442
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 9.25e1
  variant carriers: 3450
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 7.25e1
  variant carriers: 1924
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.25e1
  variant carriers: 607
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 5.75e1
  variant carriers: 872
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 6.75e1
  variant carriers: 1578
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.25e1
  variant carriers: 1197
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 8.75e1
  variant carriers: 3248
genotype depth: GenotypeDepth
  all individuals: 41086
  bin: 9.75e1
  variant carriers: 41021
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 8.25e1
  variant carriers: 2800
genotype quality: GenotypeQuality
  all individuals: 59977
  bin: 9.75e1
  variant carriers: 59789
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 2
hgvs: p.Asp756Asp
num of homozygotes: 49097
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

3-3081826-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081826
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081826
    reference: chr 3
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1464G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1285G>A
  hgvsp: ENSP00000392077.2:p.Ala429Thr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.519G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.531C>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2269G>A
  hgvsp: ENSP00000380602.1:p.Ala757Thr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2269G>A
  hgvsp: ENSP00000396010.1:p.Ala757Thr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1285G>A
  hgvsp: ENSP00000380600.2:p.Ala429Thr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1612G>A
  hgvsp: ENSP00000351267.3:p.Ala538Thr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2269G>A
  hgvsp: ENSP00000413642.1:p.Ala757Thr
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala757Thr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-3081826-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081826
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081826
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1285G>T
  hgvsp: ENSP00000392077.2:p.Ala429Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1612G>T
  hgvsp: ENSP00000351267.3:p.Ala538Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1285G>T
  hgvsp: ENSP00000380600.2:p.Ala429Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.531C>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.519G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2269G>T
  hgvsp: ENSP00000413642.1:p.Ala757Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1464G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2269G>T
  hgvsp: ENSP00000380602.1:p.Ala757Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2269G>T
  hgvsp: ENSP00000396010.1:p.Ala757Ser
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala757Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-3081834-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081834
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081834
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1620A>G
  hgvsp: ENST00000358480.3:c.1620A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1293A>G
  hgvsp: ENST00000448906.2:c.1293A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2277A>G
  hgvsp: ENST00000397461.1:c.2277A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1293A>G
  hgvsp: ENST00000397459.2:c.1293A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2277A>G
  hgvsp: ENST00000418658.1:c.2277A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2277A>G
  hgvsp: ENST00000427331.1:c.2277A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.527A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.523T>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1472A>G
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg759Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

3-3081837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081837
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081837
    reference: chr 3
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.530C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2280C>T
  hgvsp: ENST00000418658.1:c.2280C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.520G>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2280C>T
  hgvsp: ENST00000427331.1:c.2280C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2280C>T
  hgvsp: ENST00000397461.1:c.2280C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1296C>T
  hgvsp: ENST00000448906.2:c.1296C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1296C>T
  hgvsp: ENST00000397459.2:c.1296C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1623C>T
  hgvsp: ENST00000358480.3:c.1623C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1475C>T
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr760Tyr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

3-3081838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081838
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081838
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2281G>A
  hgvsp: ENSP00000380602.1:p.Val761Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2281G>A
  hgvsp: ENSP00000396010.1:p.Val761Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.531G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1624G>A
  hgvsp: ENSP00000351267.3:p.Val542Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1297G>A
  hgvsp: ENSP00000392077.2:p.Val433Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2281G>A
  hgvsp: ENSP00000413642.1:p.Val761Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1297G>A
  hgvsp: ENSP00000380600.2:p.Val433Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1476G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.519C>T
  variant of: http://identifiers.org/hgnc/39985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12380
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val761Met
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

3-3081846-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081846
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081846
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2289G>T
  hgvsp: ENSP00000413642.1:p.Arg763Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1305G>T
  hgvsp: ENSP00000392077.2:p.Arg435Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1632G>T
  hgvsp: ENSP00000351267.3:p.Arg544Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2289G>T
  hgvsp: ENSP00000380602.1:p.Arg763Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1484G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2289G>T
  hgvsp: ENSP00000396010.1:p.Arg763Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1305G>T
  hgvsp: ENSP00000380600.2:p.Arg435Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.539G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.511C>A
  variant of: http://identifiers.org/hgnc/39985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg763Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

3-3081851-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081851
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081851
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2294A>G
  hgvsp: ENSP00000396010.1:p.Glu765Gly
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1489A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2294A>G
  hgvsp: ENSP00000413642.1:p.Glu765Gly
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.544A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1310A>G
  hgvsp: ENSP00000380600.2:p.Glu437Gly
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1637A>G
  hgvsp: ENSP00000351267.3:p.Glu546Gly
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2294A>G
  hgvsp: ENSP00000380602.1:p.Glu765Gly
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.506T>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1310A>G
  hgvsp: ENSP00000392077.2:p.Glu437Gly
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14097
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu765Gly
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

3-3081855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081855
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081855
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2298C>T
  hgvsp: ENST00000427331.1:c.2298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1493C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1314C>T
  hgvsp: ENST00000397459.2:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.502G>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.548C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2298C>T
  hgvsp: ENST00000397461.1:c.2298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1314C>T
  hgvsp: ENST00000448906.2:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1641C>T
  hgvsp: ENST00000358480.3:c.1641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2298C>T
  hgvsp: ENST00000418658.1:c.2298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser766Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-3081856-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081856
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081856
    reference: chr 3
allele count: 9
allele frequency: 7.413020558777017e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1642G>A
  hgvsp: ENSP00000351267.3:p.Val548Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.501C>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1315G>A
  hgvsp: ENSP00000392077.2:p.Val439Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2299G>A
  hgvsp: ENSP00000380602.1:p.Val767Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.549G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2299G>A
  hgvsp: ENSP00000413642.1:p.Val767Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1315G>A
  hgvsp: ENSP00000380600.2:p.Val439Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1494G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2299G>A
  hgvsp: ENSP00000396010.1:p.Val767Met
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val767Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

3-3081859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081859
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081859
    reference: chr 3
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1645C>T
  hgvsp: ENSP00000351267.3:p.His549Tyr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1318C>T
  hgvsp: ENSP00000392077.2:p.His440Tyr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2302C>T
  hgvsp: ENSP00000396010.1:p.His768Tyr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1497C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2302C>T
  hgvsp: ENSP00000413642.1:p.His768Tyr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2302C>T
  hgvsp: ENSP00000380602.1:p.His768Tyr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1318C>T
  hgvsp: ENSP00000380600.2:p.His440Tyr
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.552C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.498G>A
  variant of: http://identifiers.org/hgnc/39985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His768Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/3-3081860-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081860
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081860
    reference: chr 3
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.497T>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.553A>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1319A>C
  hgvsp: ENSP00000380600.2:p.His440Pro
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1498A>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1646A>C
  hgvsp: ENSP00000351267.3:p.His549Pro
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2303A>C
  hgvsp: ENSP00000413642.1:p.His768Pro
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2303A>C
  hgvsp: ENSP00000396010.1:p.His768Pro
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2303A>C
  hgvsp: ENSP00000380602.1:p.His768Pro
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1319A>C
  hgvsp: ENSP00000392077.2:p.His440Pro
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His768Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

3-3081868-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081868
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081868
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1327T>C
  hgvsp: ENSP00000392077.2:p.Ser443Pro
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2311T>C
  hgvsp: ENSP00000413642.1:p.Ser771Pro
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1327T>C
  hgvsp: ENSP00000380600.2:p.Ser443Pro
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.489A>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1654T>C
  hgvsp: ENSP00000351267.3:p.Ser552Pro
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1506T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.561T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2311T>C
  hgvsp: ENSP00000380602.1:p.Ser771Pro
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2311T>C
  hgvsp: ENSP00000396010.1:p.Ser771Pro
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14084
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser771Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

3-3081879-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081879
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081879
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.572G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1665G>A
  hgvsp: ENST00000358480.3:c.1665G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1338G>A
  hgvsp: ENST00000397459.2:c.1338G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1517G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2322G>A
  hgvsp: ENST00000418658.1:c.2322G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1338G>A
  hgvsp: ENST00000448906.2:c.1338G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.478C>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2322G>A
  hgvsp: ENST00000427331.1:c.2322G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2322G>A
  hgvsp: ENST00000397461.1:c.2322G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu774Glu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-3081883-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081883
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081883
    reference: chr 3
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2326A>G
  hgvsp: ENSP00000396010.1:p.Lys776Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1342A>G
  hgvsp: ENSP00000380600.2:p.Lys448Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2326A>G
  hgvsp: ENSP00000380602.1:p.Lys776Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1342A>G
  hgvsp: ENSP00000392077.2:p.Lys448Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2326A>G
  hgvsp: ENSP00000413642.1:p.Lys776Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1669A>G
  hgvsp: ENSP00000351267.3:p.Lys557Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1521A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.474T>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.576A>G
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14080
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7194
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys776Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

3-3081886-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081886
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081886
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1672G>T
  hgvsp: ENSP00000351267.3:p.Val558Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2329G>T
  hgvsp: ENSP00000380602.1:p.Val777Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2329G>T
  hgvsp: ENSP00000413642.1:p.Val777Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1345G>T
  hgvsp: ENSP00000380600.2:p.Val449Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1524G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2329G>T
  hgvsp: ENSP00000396010.1:p.Val777Leu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.471C>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.579G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1345G>T
  hgvsp: ENSP00000392077.2:p.Val449Leu
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14079
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val777Leu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

3-3081889-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081889
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081889
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.468C>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2332G>T
  hgvsp: ENSP00000396010.1:p.Gly778Cys
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1527G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1348G>T
  hgvsp: ENSP00000392077.2:p.Gly450Cys
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2332G>T
  hgvsp: ENSP00000380602.1:p.Gly778Cys
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1348G>T
  hgvsp: ENSP00000380600.2:p.Gly450Cys
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.582G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2332G>T
  hgvsp: ENSP00000413642.1:p.Gly778Cys
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1675G>T
  hgvsp: ENSP00000351267.3:p.Gly559Cys
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14078
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly778Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-3081891-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081891
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081891
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2334T>A
  hgvsp: ENST00000397461.1:c.2334T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2334T>A
  hgvsp: ENST00000427331.1:c.2334T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.466A>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2334T>A
  hgvsp: ENST00000418658.1:c.2334T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1350T>A
  hgvsp: ENST00000397459.2:c.1350T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1350T>A
  hgvsp: ENST00000448906.2:c.1350T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1529T>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1677T>A
  hgvsp: ENST00000358480.3:c.1677T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.584T>A
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31765
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly778Gly
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

3-3081891-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081891
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081891
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.466A>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1350T>C
  hgvsp: ENST00000397459.2:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2334T>C
  hgvsp: ENST00000427331.1:c.2334T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2334T>C
  hgvsp: ENST00000397461.1:c.2334T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1677T>C
  hgvsp: ENST00000358480.3:c.1677T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1350T>C
  hgvsp: ENST00000448906.2:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1529T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.584T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2334T>C
  hgvsp: ENST00000418658.1:c.2334T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31765
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly778Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

3-3081892-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081892
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081892
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2335G>A
  hgvsp: ENSP00000413642.1:p.Val779Ile
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1351G>A
  hgvsp: ENSP00000380600.2:p.Val451Ile
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1351G>A
  hgvsp: ENSP00000392077.2:p.Val451Ile
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.465C>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1530G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2335G>A
  hgvsp: ENSP00000380602.1:p.Val779Ile
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1678G>A
  hgvsp: ENSP00000351267.3:p.Val560Ile
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2335G>A
  hgvsp: ENSP00000396010.1:p.Val779Ile
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.585G>A
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14075
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val779Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

3-3081902-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081902
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081902
    reference: chr 3
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1361A>G
  hgvsp: ENSP00000392077.2:p.Asn454Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1361A>G
  hgvsp: ENSP00000380600.2:p.Asn454Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2345A>G
  hgvsp: ENSP00000396010.1:p.Asn782Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1688A>G
  hgvsp: ENSP00000351267.3:p.Asn563Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2345A>G
  hgvsp: ENSP00000413642.1:p.Asn782Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.595A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1540A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2345A>G
  hgvsp: ENSP00000380602.1:p.Asn782Ser
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.455T>C
  variant of: http://identifiers.org/hgnc/39985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn782Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

3-3081908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081908
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081908
    reference: chr 3
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2351G>A
  hgvsp: ENSP00000380602.1:p.Gly784Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2351G>A
  hgvsp: ENSP00000396010.1:p.Gly784Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1694G>A
  hgvsp: ENSP00000351267.3:p.Gly565Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2351G>A
  hgvsp: ENSP00000413642.1:p.Gly784Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.449C>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.601G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1367G>A
  hgvsp: ENSP00000380600.2:p.Gly456Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1367G>A
  hgvsp: ENSP00000392077.2:p.Gly456Glu
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1546G>A
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly784Glu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum

3-3081909-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081909
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081909
    reference: chr 3
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1547A>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2352A>T
  hgvsp: ENST00000427331.1:c.2352A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1368A>T
  hgvsp: ENST00000397459.2:c.1368A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2352A>T
  hgvsp: ENST00000418658.1:c.2352A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1695A>T
  hgvsp: ENST00000358480.3:c.1695A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.448T>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.602A>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1368A>T
  hgvsp: ENST00000448906.2:c.1368A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2352A>T
  hgvsp: ENST00000397461.1:c.2352A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31750
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly784Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/3-3081926-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081926
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081926
    reference: chr 3
allele count: 3
allele frequency: 2.472595400972554e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1385C>A
  hgvsp: ENSP00000380600.2:p.Pro462His
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1385C>A
  hgvsp: ENSP00000392077.2:p.Pro462His
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.619C>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2369C>A
  hgvsp: ENSP00000380602.1:p.Pro790His
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2369C>A
  hgvsp: ENSP00000413642.1:p.Pro790His
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1564C>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2369C>A
  hgvsp: ENSP00000396010.1:p.Pro790His
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.431G>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1712C>A
  hgvsp: ENSP00000351267.3:p.Pro571His
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro790His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

3-3081933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081933
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081933
    reference: chr 3
allele count: 16
allele frequency: 1.319174196952708e-4
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1392G>A
  hgvsp: ENST00000397459.2:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2376G>A
  hgvsp: ENST00000418658.1:c.2376G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1719G>A
  hgvsp: ENST00000358480.3:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1392G>A
  hgvsp: ENST00000448906.2:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2376G>A
  hgvsp: ENST00000397461.1:c.2376G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.626G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.424C>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2376G>A
  hgvsp: ENST00000427331.1:c.2376G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1571G>A
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23595
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr792Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

3-3081934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081934
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081934
    reference: chr 3
allele count: 4
allele frequency: 3.297881111385935e-5
allele num: 121290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1393G>A
  hgvsp: ENSP00000392077.2:p.Val465Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1720G>A
  hgvsp: ENSP00000351267.3:p.Val574Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1393G>A
  hgvsp: ENSP00000380600.2:p.Val465Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2377G>A
  hgvsp: ENSP00000396010.1:p.Val793Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.627G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2377G>A
  hgvsp: ENSP00000413642.1:p.Val793Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2377G>A
  hgvsp: ENSP00000380602.1:p.Val793Met
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1572G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.423C>T
  variant of: http://identifiers.org/hgnc/39985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23599
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val793Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

3-3081939-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081939
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081939
    reference: chr 3
allele count: 6
allele frequency: 4.949025042066713e-5
allele num: 121236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2382G>A
  hgvsp: ENST00000418658.1:c.2382G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1725G>A
  hgvsp: ENST00000358480.3:c.1725G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2382G>A
  hgvsp: ENST00000397461.1:c.2382G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2382G>A
  hgvsp: ENST00000427331.1:c.2382G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1577G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1398G>A
  hgvsp: ENST00000397459.2:c.1398G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1398G>A
  hgvsp: ENST00000448906.2:c.1398G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.632G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.418C>T
  variant of: http://identifiers.org/hgnc/39985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val794Val
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

3-3081941-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081941
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081941
    reference: chr 3
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1400A>G
  hgvsp: ENSP00000380600.2:p.Tyr467Cys
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1579A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2384A>G
  hgvsp: ENSP00000396010.1:p.Tyr795Cys
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.634A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1727A>G
  hgvsp: ENSP00000351267.3:p.Tyr576Cys
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1400A>G
  hgvsp: ENSP00000392077.2:p.Tyr467Cys
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2384A>G
  hgvsp: ENSP00000413642.1:p.Tyr795Cys
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.416T>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2384A>G
  hgvsp: ENSP00000380602.1:p.Tyr795Cys
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr795Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

3-3081951-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081951
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081951
    reference: chr 3
allele count: 1
allele frequency: 8.263233568560049e-6
allele num: 121018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2394A>G
  hgvsp: ENST00000418658.1:c.2394A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2394A>G
  hgvsp: ENST00000427331.1:c.2394A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2394A>G
  hgvsp: ENST00000397461.1:c.2394A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1410A>G
  hgvsp: ENST00000397459.2:c.1410A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.644A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1589A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1737A>G
  hgvsp: ENST00000358480.3:c.1737A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1410A>G
  hgvsp: ENST00000448906.2:c.1410A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.406T>C
  variant of: http://identifiers.org/hgnc/39985
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7047
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu798Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

3-3081959-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081959
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081959
    reference: chr 3
allele count: 11205
allele frequency: 9.302460731245642e-2
allele num: 120452
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+4T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+4T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+4T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+4T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+4T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.398A>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+4T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+4T>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+4T>C
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 8.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 9.75e1
  variant carriers: 1202
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 2.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 3.75e1
  variant carriers: 1136
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 6.75e1
  variant carriers: 463
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 22801
  bin: 2.75e1
  variant carriers: 418
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.75e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 11840
  bin: 3.25e1
  variant carriers: 777
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 5.75e1
  variant carriers: 891
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 1116
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 661
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 4.25e1
  variant carriers: 1207
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 4.75e1
  variant carriers: 1255
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 2
hgvs: c.2398+4T>C
num of homozygotes: 760
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

3-3081960-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081960
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081960
    reference: chr 3
allele count: 16
allele frequency: 1.329499941834378e-4
allele num: 120346
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+5C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+5C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+5C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+5C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+5C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+5C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+5C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+5C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.397G>A
  variant of: http://identifiers.org/hgnc/39985
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27049
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
hgvs: c.2398+5C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

3-3081961-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081961
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081961
    reference: chr 3
allele count: 3
allele frequency: 2.495092983798529e-5
allele num: 120236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+6G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+6G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.396C>T
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+6G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+6G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+6G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+6G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+6G>A
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+6G>A
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13129
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
hgvs: c.2398+6G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

3-3081965-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081965
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081965
    reference: chr 3
allele count: 1
allele frequency: 8.343902276216541e-6
allele num: 119848
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+10A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+10A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.392T>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+10A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+10A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+10A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+10A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+10A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+10A>G
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

3-3081972-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081972
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081972
    reference: chr 3
allele count: 2
allele frequency: 1.682566924099406e-5
allele num: 118866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+17C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+17C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+17C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+17C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+17C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+17C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.385G>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+17C>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+17C>T
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/3-3081974-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081974
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081974
    reference: chr 3
allele count: 1
allele frequency: 8.433836552247617e-6
allele num: 118570
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+19A>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+19A>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.383T>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+19A>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+19A>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+19A>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+19A>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+19A>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+19A>C
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7862
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

3-3081974-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081974
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081974
    reference: chr 3
allele count: 1
allele frequency: 8.433836552247617e-6
allele num: 118570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+19A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+19A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+19A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+19A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.383T>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+19A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+19A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+19A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+19A>G
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10759
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4127
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-3081975-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081975
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081975
    reference: chr 3
allele count: 601
allele frequency: 5.075327658424537e-3
allele num: 118416
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+20G>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+20G>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+20G>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.382C>G
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+20G>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+20G>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+20G>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+20G>C
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+20G>C
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 2.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 3.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 10530
  bin: 3.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 4.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 23179
  bin: 2.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 4331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 10
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

3-3081975-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081975
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081975
    reference: chr 3
allele count: 1
allele frequency: 8.444804756114038e-6
allele num: 118416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+20G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+20G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+20G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+20G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+20G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.382C>A
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+20G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+20G>T
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+20G>T
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23179
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-3081984-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081984
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081982
    reference: chr 3
allele count: 1
allele frequency: 8.525294548926666e-6
allele num: 117298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+31_1741+32delGT
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+31_*1593+32delGT
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.371_372delCA
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+31_1414+32delGT
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+31_2398+32delGT
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+31_1414+32delGT
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+31_648+32delGT
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+31_2398+32delGT
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+31_2398+32delGT
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6681
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5848
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: CTG
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

3-3081990-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081990
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081990
    reference: chr 3
allele count: 1
allele frequency: 8.588409083101446e-6
allele num: 116436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+35A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+35A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+35A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.367T>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+35A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+35A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+35A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+35A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+35A>G
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4129
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-3081999-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3081999
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3081999
    reference: chr 3
allele count: 2
allele frequency: 1.74361835681406e-5
allele num: 114704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+44C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+44C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.358G>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+44C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+44C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+44C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+44C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+44C>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+44C>G
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9851
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15008
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7679
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6371
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-3082001-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3082001
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 3082001
    reference: chr 3
allele count: 2
allele frequency: 1.74681642706168e-5
allele num: 114494
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396010
  ensembl transcript: ENST00000418658
  gene symbol: CNTN4
  hgvsc: ENST00000418658.1:c.2398+46A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237990
  ensembl transcript: ENST00000442749
  gene symbol: CNTN4-AS1
  hgvsc: ENST00000442749.2:n.356T>C
  variant of: http://identifiers.org/hgnc/39985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380600
  ensembl transcript: ENST00000397459
  gene symbol: CNTN4
  hgvsc: ENST00000397459.2:c.1414+46A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl transcript: ENST00000484686
  gene symbol: CNTN4
  hgvsc: ENST00000484686.1:n.648+46A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000351267
  ensembl transcript: ENST00000358480
  gene symbol: CNTN4
  hgvsc: ENST00000358480.3:c.1741+46A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000392077
  ensembl transcript: ENST00000448906
  gene symbol: CNTN4
  hgvsc: ENST00000448906.2:c.1414+46A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000380602
  ensembl transcript: ENST00000397461
  gene symbol: CNTN4
  hgvsc: ENST00000397461.1:c.2398+46A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000413642
  ensembl transcript: ENST00000427331
  gene symbol: CNTN4
  hgvsc: ENST00000427331.1:c.2398+46A>G
  variant of: http://identifiers.org/hgnc/2174
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144619
  ensembl protein: ENSP00000396719
  ensembl transcript: ENST00000427741
  gene symbol: CNTN4
  hgvsc: ENST00000427741.1:c.*1593+46A>G
  variant of: http://identifiers.org/hgnc/2174
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7180
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3920
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15434
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21262
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.42600679281902e-4
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.704e0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

DP
type: SiteQuality
SIO_000300: 2.216559e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 7.98e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.261e0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7191
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4783
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15443
bin: 9.75e1
variant carriers: 11

South Asian
type: Population
allele count: 11
allele frequency: 6.671518680252305e-4
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 5.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.62e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

DP
type: SiteQuality
SIO_000300: 2.218616e6

GenotypeQuality
all individuals: 2440
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3945
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21319
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15458
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7198
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.845414343395501e-4
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.899e0

DP
type: SiteQuality
SIO_000300: 2.22093e6

QD
type: SiteQuality
SIO_000300: 2.531e1

FS
type: SiteQuality
SIO_000300: 4.653e0

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.809e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4808
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21304
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3961
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7200
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.055101422948834e-4
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.512e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.378e1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

DP
type: SiteQuality
SIO_000300: 2.221881e6

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3979
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21292
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3396
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4819
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.361e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

FS
type: SiteQuality
SIO_000300: 1.195e0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

DP
type: SiteQuality
SIO_000300: 2.22299e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.193e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 15484
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

FS
type: SiteQuality
SIO_000300: 1.5564e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.387e1

MQ
type: SiteQuality
SIO_000300: 5.949e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

DP
type: SiteQuality
SIO_000300: 2.223732e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.937e1

VQSLOD
type: SiteQuality
SIO_000300: -2.151e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.69e-1

FS
type: SiteQuality
SIO_000300: 1.434e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.053e0

QD
type: SiteQuality
SIO_000300: 1.415e1

DP
type: SiteQuality
SIO_000300: 2.224912e6

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.913e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.175e0

FS
type: SiteQuality
SIO_000300: 4.348e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.08e-1

QD
type: SiteQuality
SIO_000300: 1.67e1

DP
type: SiteQuality
SIO_000300: 2.226502e6

VQSLOD
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
all individuals: 2482
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3404
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variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.795e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-2

DP
type: SiteQuality
SIO_000300: 2.227833e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.776e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.081e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.076e0

DP
type: SiteQuality
SIO_000300: 2.228058e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

MQRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.28e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.303e0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.978e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.497e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.324e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.657e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.131e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.228234e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592912705272256e-4
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.228644e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e-1

FS
type: SiteQuality
SIO_000300: 4.207e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.14e-1

QD
type: SiteQuality
SIO_000300: 1.147e1

GenotypeQuality
all individuals: 8
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variant carriers: 2

GenotypeQuality
all individuals: 2
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variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 6
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variant carriers: 2

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 1227
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GenotypeQuality
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GenotypeQuality
all individuals: 44771
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GenotypeQuality
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variant carriers: 23

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 8

Other
type: Population
allele count: 323
allele frequency: 3.55726872246696e-1
allele num: 908
num of homozygotes: 64

European (Finnish)
type: Population
allele count: 2593
allele frequency: 3.924031476997579e-1
allele num: 6608
num of homozygotes: 508

East Asian
type: Population
allele count: 4892
allele frequency: 5.663347997221579e-1
allele num: 8638
num of homozygotes: 1373

Latino
type: Population
allele count: 5172
allele frequency: 4.470181503889369e-1
allele num: 11570
num of homozygotes: 1195

European (Non-Finnish)
type: Population
allele count: 27219
allele frequency: 4.079586330935252e-1
allele num: 66720
num of homozygotes: 5580

South Asian
type: Population
allele count: 7588
allele frequency: 4.596002422774076e-1
allele num: 16510
num of homozygotes: 1802

African
type: Population
allele count: 1338
allele frequency: 1.285796655775514e-1
allele num: 10406
num of homozygotes: 77

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

DP
type: SiteQuality
SIO_000300: 4.363247e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

QD
type: SiteQuality
SIO_000300: 1.752e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.154e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
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African
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South Asian
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Other
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Latino
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allele frequency: 5.182242183451373e-4
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European (Non-Finnish)
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African
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allele frequency: 1.633672881030175e-2
allele num: 10406
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South Asian
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QD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
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Latino
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African
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Other
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African
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East Asian
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South Asian
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Latino
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allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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East Asian
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Latino
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Other
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European (Finnish)
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ReadPosRankSum
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BaseQRankSum
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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East Asian
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Latino
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Other
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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MQRankSum
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ClippingRankSum
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MQ
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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VQSLOD
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FS
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QD
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BaseQRankSum
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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ClippingRankSum
type: SiteQuality
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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num of homozygotes: 0

East Asian
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European (Finnish)
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Other
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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DP
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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East Asian
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.996703626011388e-5
allele num: 66740
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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European (Finnish)
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
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VQSLOD
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
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East Asian
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Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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ClippingRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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DP
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MQRankSum
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VQSLOD
type: SiteQuality
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MQ
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

South Asian
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East Asian
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African
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Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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FS
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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African
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European (Non-Finnish)
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DP
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ReadPosRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
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Latino
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num of homozygotes: 0

European (Finnish)
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South Asian
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FS
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ReadPosRankSum
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MQ
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QD
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BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

East Asian
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allele frequency: 8.89364161849711e-1
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num of homozygotes: 3418

African
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allele count: 10010
allele frequency: 9.619450317124736e-1
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European (Finnish)
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allele count: 5827
allele frequency: 8.81009978832779e-1
allele num: 6614
num of homozygotes: 2569

European (Non-Finnish)
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allele count: 61247
allele frequency: 9.176955349115973e-1
allele num: 66740
num of homozygotes: 28115

Other
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num of homozygotes: 358

Latino
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allele frequency: 8.681527561776395e-1
allele num: 11574
num of homozygotes: 4379

South Asian
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allele frequency: 8.072916666666666e-1
allele num: 16512
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MQRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ClippingRankSum
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SIO_000300: -4.43e-1

VQSLOD
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QD
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MQ
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SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 5.21e-1

DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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SIO_000300: 1.14e0

BaseQRankSum
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SIO_000300: -5.89e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

DP
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BaseQRankSum
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FS
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MQRankSum
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MQ
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SIO_000300: 5.947e1

InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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FS
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.015e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
SIO_000300: -1.442e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

MQRankSum
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SIO_000300: 4.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.326000000000001e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.189e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
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DP
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SIO_000300: 2.364126e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.158e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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VQSLOD
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QD
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InbreedingCoeff
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MQ
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SIO_000300: 5.901e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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DP
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ReadPosRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8654
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Other
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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South Asian
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ClippingRankSum
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QD
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VQSLOD
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MQ
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FS
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DP
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.495190146543199e-5
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

BaseQRankSum
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SIO_000300: 4.91e-1

DP
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FS
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SIO_000300: 0.0e0

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: -4.6e-1

BaseQRankSum
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SIO_000300: -3.534e0

FS
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SIO_000300: 5.22e-1

ReadPosRankSum
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SIO_000300: 1.02e0

DP
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MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

ClippingRankSum
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SIO_000300: 1.4e-1

DP
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
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FS
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DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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Latino
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African
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European (Non-Finnish)
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VQSLOD
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DP
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FS
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QD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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QD
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MQ
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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QD
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VQSLOD
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ClippingRankSum
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FS
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MQRankSum
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DP
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 6.0e1

MQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
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DP
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QD
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InbreedingCoeff
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SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

VQSLOD
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SIO_000300: 9.360000000000001e-1

BaseQRankSum
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SIO_000300: 2.72e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.372e0

ReadPosRankSum
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MQ
type: SiteQuality
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DP
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InbreedingCoeff
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SIO_000300: 1.0e-4

MQRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -1.815e0

MQ
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.86e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.332e0

BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.361761e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

DP
type: SiteQuality
SIO_000300: 2.361457e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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Other
type: Population
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

African
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South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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FS
type: SiteQuality
SIO_000300: 2.485e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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InbreedingCoeff
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

GenotypeQuality
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 8.99847026005579e-5
allele num: 66678
num of homozygotes: 0

European (Finnish)
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allele num: 6612
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East Asian
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Other
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African
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allele frequency: 2.883506343713956e-4
allele num: 10404
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South Asian
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allele frequency: 4.241910071506484e-4
allele num: 16502
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Latino
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MQ
type: SiteQuality
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ClippingRankSum
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MQRankSum
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QD
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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African
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South Asian
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allele frequency: 2.423948612289419e-4
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East Asian
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InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

DP
type: SiteQuality
SIO_000300: 2.357185e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.096e1

GenotypeQuality
all individuals: 31594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7139
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14046
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.63901018922853e-4
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.498e0

QD
type: SiteQuality
SIO_000300: 1.192e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 6.16e-1

DP
type: SiteQuality
SIO_000300: 2.355591e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.29e-1

FS
type: SiteQuality
SIO_000300: 5.75e-1

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1581
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14044
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.16e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.81e-1

QD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.405e0

DP
type: SiteQuality
SIO_000300: 2.354604e6

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14035
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.522e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.486e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.046e0

QD
type: SiteQuality
SIO_000300: 1.082e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.391e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 2.347568e6

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1789
bin: 7.75e1
variant carriers: 17

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 193
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29923
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1044
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6554
bin: 6.75e1
variant carriers: 11

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1499
bin: 7.25e1
variant carriers: 10

GenotypeQuality
all individuals: 615
bin: 9.25e1
variant carriers: 25

GenotypeQuality
all individuals: 16715
bin: 9.75e1
variant carriers: 10335

Other
type: Population
allele count: 88
allele frequency: 9.734513274336283e-2
allele num: 904
num of homozygotes: 7

East Asian
type: Population
allele count: 12
allele frequency: 1.414093801555503e-3
allele num: 8486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6126
allele frequency: 9.243164946587e-2
allele num: 66276
num of homozygotes: 276

Latino
type: Population
allele count: 661
allele frequency: 5.778982339569855e-2
allele num: 11438
num of homozygotes: 29

African
type: Population
allele count: 2899
allele frequency: 2.798262548262548e-1
allele num: 10360
num of homozygotes: 406

European (Finnish)
type: Population
allele count: 324
allele frequency: 4.904632152588556e-2
allele num: 6606
num of homozygotes: 7

South Asian
type: Population
allele count: 1095
allele frequency: 6.684165547552191e-2
allele num: 16382
num of homozygotes: 35

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

DP
type: SiteQuality
SIO_000300: 2.318946e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

QD
type: SiteQuality
SIO_000300: 1.679e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.93e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7912
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36036
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7878
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.769702689948089e-3
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509798592867711e-5
allele num: 66234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

QD
type: SiteQuality
SIO_000300: 1.255e1

FS
type: SiteQuality
SIO_000300: 2.762e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

DP
type: SiteQuality
SIO_000300: 2.059542e6

GenotypeQuality
all individuals: 7892
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35897
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7837
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022700480609376e-5
allele num: 66166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.116207951070337e-5
allele num: 16350
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.515000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -4.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.509e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

DP
type: SiteQuality
SIO_000300: 2.054749e6

QD
type: SiteQuality
SIO_000300: 1.36e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.015e0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e-1

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35132
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7885
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7676
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516346212167162e-5
allele num: 65948
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.12e0

FS
type: SiteQuality
SIO_000300: 2.736e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 2.035637e6

QD
type: SiteQuality
SIO_000300: 1.534e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.76e0

VQSLOD
type: SiteQuality
SIO_000300: 6.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

GenotypeQuality
all individuals: 7034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3604
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7863
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 732
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.95579894386857e-4
allele num: 10226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.77e-1

DP
type: SiteQuality
SIO_000300: 1.970892e6

FS
type: SiteQuality
SIO_000300: 1.459e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.348e1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1955
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.888888888888889e-5
allele num: 11250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

QD
type: SiteQuality
SIO_000300: 1.606e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.945806e6

FS
type: SiteQuality
SIO_000300: 5.825e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.345e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1955
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7862
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534589650727396e-5
allele num: 65164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.945806e6

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

QD
type: SiteQuality
SIO_000300: 1.606e1

FS
type: SiteQuality
SIO_000300: 5.825e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.345e0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 225
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 587

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 29971
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1970
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.137513359458497e-3
allele num: 11228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.919752896702216e-4
allele num: 65074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.242152466367713e-3
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 552
allele frequency: 5.406464250734574e-2
allele num: 10210
num of homozygotes: 10

South Asian
type: Population
allele count: 4
allele frequency: 2.467308166790032e-4
allele num: 16212
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.933995e6

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

FS
type: SiteQuality
SIO_000300: 9.379999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.632e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.27e0

GenotypeQuality
all individuals: 29971
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1970
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 225
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6767
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.16827041697508e-5
allele num: 16212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.27e0

QD
type: SiteQuality
SIO_000300: 1.632e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

FS
type: SiteQuality
SIO_000300: 9.379999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.933995e6

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

GenotypeQuality
all individuals: 462
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55269859014968e-5
allele num: 64404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.235e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.794083e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 5429
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564455569461827e-5
allele num: 63920
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.713e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 3.453e1

FS
type: SiteQuality
SIO_000300: 6.293e0

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

DP
type: SiteQuality
SIO_000300: 1.701233e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 1535
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 103
bin: 2.5e0
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GenotypeQuality
all individuals: 1100
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variant carriers: 0

GenotypeQuality
all individuals: 479
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
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variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.851851851851852e-4
allele num: 10800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15930
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.636225e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.695e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.02e-1

QD
type: SiteQuality
SIO_000300: 1.712e1