2-157352639-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352639
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352639
    reference: chr 2
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*145G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268857
  ensembl protein: ENSP00000472140
  ensembl transcript: ENST00000601086
  gene symbol: AC011308.1
  hgvsc: ENST00000601086.1:c.17C>T
  hgvsp: ENSP00000472140.1:p.Ser6Leu
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.186G>A
  hgvsp: ENST00000310454.6:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.186G>A
  hgvsp: ENST00000409861.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19920G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.383G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.186G>A
  hgvsp: ENST00000409674.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.186G>A
  hgvsp: ENST00000438166.2:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.186G>A
  hgvsp: ENST00000540309.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*145G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.186G>A
  hgvsp: ENST00000415049.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser6Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

2-157352648-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352648
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352648
    reference: chr 2
allele count: 1
allele frequency: 8.253549026081216e-6
allele num: 121160
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.195A>G
  hgvsp: ENST00000310454.6:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000268857
  ensembl protein: ENSP00000472140
  ensembl transcript: ENST00000601086
  gene symbol: AC011308.1
  hgvsc: ENST00000601086.1:c.8T>C
  hgvsp: ENSP00000472140.1:p.Phe3Ser
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.195A>G
  hgvsp: ENST00000415049.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.392A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*154A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.195A>G
  hgvsp: ENST00000438166.2:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.195A>G
  hgvsp: ENST00000409861.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*154A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19929A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.195A>G
  hgvsp: ENST00000409674.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.195A>G
  hgvsp: ENST00000540309.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe3Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-157352654-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352654
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352654
    reference: chr 2
allele count: 82
allele frequency: 6.768692321661466e-4
allele num: 121146
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000268857
  ensembl protein: ENSP00000472140
  ensembl transcript: ENST00000601086
  gene symbol: AC011308.1
  hgvsc: ENST00000601086.1:c.2T>C
  hgvsp: ENSP00000472140.1:p.Met1?
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.201A>G
  hgvsp: ENST00000540309.1:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*160A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.201A>G
  hgvsp: ENST00000438166.2:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19935A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.201A>G
  hgvsp: ENST00000310454.6:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.201A>G
  hgvsp: ENST00000409674.1:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*160A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.201A>G
  hgvsp: ENST00000415049.1:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.201A>G
  hgvsp: ENST00000409861.1:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.398A>G
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 12488
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 30681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS

2-157352675-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352675
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352675
    reference: chr 2
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.419T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.222T>C
  hgvsp: ENST00000409861.1:c.222T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*181T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*181T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.222T>C
  hgvsp: ENST00000540309.1:c.222T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19956T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.222T>C
  hgvsp: ENST00000310454.6:c.222T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.222T>C
  hgvsp: ENST00000438166.2:c.222T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.222T>C
  hgvsp: ENST00000409674.1:c.222T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.222T>C
  hgvsp: ENST00000415049.1:c.222T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val74Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

2-157352676-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352676
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352676
    reference: chr 2
allele count: 91
allele frequency: 7.512341704228376e-4
allele num: 121134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.223A>G
  hgvsp: ENSP00000412621.1:p.Ile75Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.223A>G
  hgvsp: ENSP00000308610.5:p.Ile75Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.420A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.223A>G
  hgvsp: ENSP00000386626.1:p.Ile75Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*182A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*182A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.223A>G
  hgvsp: ENSP00000409708.2:p.Ile75Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.223A>G
  hgvsp: ENSP00000440892.1:p.Ile75Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.223A>G
  hgvsp: ENSP00000386425.1:p.Ile75Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19957A>G
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 30582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile75Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-157352676-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352676
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352676
    reference: chr 2
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*182A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.420A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.223A>T
  hgvsp: ENSP00000409708.2:p.Ile75Phe
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19957A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.223A>T
  hgvsp: ENSP00000412621.1:p.Ile75Phe
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.223A>T
  hgvsp: ENSP00000440892.1:p.Ile75Phe
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.223A>T
  hgvsp: ENSP00000386626.1:p.Ile75Phe
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.223A>T
  hgvsp: ENSP00000308610.5:p.Ile75Phe
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.223A>T
  hgvsp: ENSP00000386425.1:p.Ile75Phe
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*182A>T
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile75Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

2-157352677-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352677
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352677
    reference: chr 2
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.224T>C
  hgvsp: ENSP00000440892.1:p.Ile75Thr
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.224T>C
  hgvsp: ENSP00000409708.2:p.Ile75Thr
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.224T>C
  hgvsp: ENSP00000308610.5:p.Ile75Thr
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*183T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.224T>C
  hgvsp: ENSP00000412621.1:p.Ile75Thr
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.421T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*183T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.224T>C
  hgvsp: ENSP00000386425.1:p.Ile75Thr
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.224T>C
  hgvsp: ENSP00000386626.1:p.Ile75Thr
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19958T>C
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6691
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile75Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

2-157352684-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352684
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352684
    reference: chr 2
allele count: 1
allele frequency: 8.256411103221652e-6
allele num: 121118
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.231A>T
  hgvsp: ENST00000310454.6:c.231A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.428A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.231A>T
  hgvsp: ENST00000409861.1:c.231A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.231A>T
  hgvsp: ENST00000415049.1:c.231A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.231A>T
  hgvsp: ENST00000540309.1:c.231A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19965A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*190A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.231A>T
  hgvsp: ENST00000409674.1:c.231A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.231A>T
  hgvsp: ENST00000438166.2:c.231A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*190A>T
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly77Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

2-157352693-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352693
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352693
    reference: chr 2
allele count: 2
allele frequency: 1.651636772041093e-5
allele num: 121092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.240A>G
  hgvsp: ENST00000409674.1:c.240A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.240A>G
  hgvsp: ENST00000310454.6:c.240A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*199A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.240A>G
  hgvsp: ENST00000438166.2:c.240A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.240A>G
  hgvsp: ENST00000415049.1:c.240A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.240A>G
  hgvsp: ENST00000409861.1:c.240A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19974A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*199A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.437A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.240A>G
  hgvsp: ENST00000540309.1:c.240A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr80Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

2-157352694-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352694
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352694
    reference: chr 2
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.241G>A
  hgvsp: ENSP00000386626.1:p.Gly81Arg
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.241G>A
  hgvsp: ENSP00000386425.1:p.Gly81Arg
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*200G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.241G>A
  hgvsp: ENSP00000440892.1:p.Gly81Arg
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*200G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.241G>A
  hgvsp: ENSP00000412621.1:p.Gly81Arg
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19975G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.241G>A
  hgvsp: ENSP00000308610.5:p.Gly81Arg
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.438G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.241G>A
  hgvsp: ENSP00000409708.2:p.Gly81Arg
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly81Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-157367409-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367409
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367409
    reference: chr 2
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.376A>G
  hgvsp: ENSP00000386425.1:p.Ile126Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.376A>G
  hgvsp: ENSP00000409708.2:p.Ile126Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.376A>G
  hgvsp: ENSP00000386626.1:p.Ile126Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.376A>G
  hgvsp: ENSP00000308610.5:p.Ile126Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34690A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.376A>G
  hgvsp: ENSP00000440892.1:p.Ile126Val
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5022
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile126Val
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

2-157352695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352695
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352695
    reference: chr 2
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.242G>A
  hgvsp: ENSP00000386425.1:p.Gly81Glu
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19976G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.242G>A
  hgvsp: ENSP00000440892.1:p.Gly81Glu
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.242G>A
  hgvsp: ENSP00000412621.1:p.Gly81Glu
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*201G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.439G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*201G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.242G>A
  hgvsp: ENSP00000386626.1:p.Gly81Glu
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.242G>A
  hgvsp: ENSP00000409708.2:p.Gly81Glu
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.242G>A
  hgvsp: ENSP00000308610.5:p.Gly81Glu
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly81Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD

2-157352702-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352702
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352702
    reference: chr 2
allele count: 3
allele frequency: 2.478232854759033e-5
allele num: 121054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.446C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.249C>T
  hgvsp: ENST00000438166.2:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19983C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.249C>T
  hgvsp: ENST00000409674.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.249C>T
  hgvsp: ENST00000540309.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.249C>T
  hgvsp: ENST00000409861.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.249C>T
  hgvsp: ENST00000310454.6:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.249C>T
  hgvsp: ENST00000415049.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*208C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*208C>T
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30078
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly83Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

2-157352707-C-CGCTAGAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352707
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352714
    reference: chr 2
allele count: 1
allele frequency: 8.263779852904718e-6
allele num: 121010
alternate allele: CGCTAGAT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.258_264dupAGATGCT
  hgvsp: ENSP00000308610.5:p.Val89ArgfsTer16
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.258_264dupAGATGCT
  hgvsp: ENSP00000440892.1:p.Val89ArgfsTer16
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.455_461dupAGATGCT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*217_*223dupAGATGCT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.258_264dupAGATGCT
  hgvsp: ENSP00000386425.1:p.Val89ArgfsTer16
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.258_264dupAGATGCT
  hgvsp: ENSP00000386626.1:p.Val89ArgfsTer16
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*217_*223dupAGATGCT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.258_264dupAGATGCT
  hgvsp: ENSP00000409708.2:p.Val89ArgfsTer16
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.258_264dupAGATGCT
  hgvsp: ENSP00000412621.1:p.Val89ArgfsTer16
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val89ArgfsTer16
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

2-157352707-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352707
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352707
    reference: chr 2
allele count: 3
allele frequency: 2.479133955871415e-5
allele num: 121010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*213C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.254C>T
  hgvsp: ENSP00000386425.1:p.Ala85Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.254C>T
  hgvsp: ENSP00000386626.1:p.Ala85Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*213C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.254C>T
  hgvsp: ENSP00000440892.1:p.Ala85Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19988C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.254C>T
  hgvsp: ENSP00000409708.2:p.Ala85Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.254C>T
  hgvsp: ENSP00000308610.5:p.Ala85Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.451C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.254C>T
  hgvsp: ENSP00000412621.1:p.Ala85Val
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala85Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

2-157352708-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352708
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352708
    reference: chr 2
allele count: 2
allele frequency: 1.653138483410755e-5
allele num: 120982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.255G>A
  hgvsp: ENST00000409861.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.255G>A
  hgvsp: ENST00000415049.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.255G>A
  hgvsp: ENST00000438166.2:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.255G>A
  hgvsp: ENST00000310454.6:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*214G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.255G>A
  hgvsp: ENST00000540309.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.255G>A
  hgvsp: ENST00000409674.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19989G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*214G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.452G>A
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala85Ala
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

2-157352714-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352714
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352714
    reference: chr 2
allele count: 3
allele frequency: 2.481143310837634e-5
allele num: 120912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19995T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.261T>C
  hgvsp: ENST00000409861.1:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.458T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*220T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.261T>C
  hgvsp: ENST00000310454.6:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.261T>C
  hgvsp: ENST00000540309.1:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.261T>C
  hgvsp: ENST00000409674.1:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.261T>C
  hgvsp: ENST00000415049.1:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.261T>C
  hgvsp: ENST00000438166.2:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*220T>C
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp87Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

2-157352716-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352716
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352716
    reference: chr 2
allele count: 1
allele frequency: 8.277186418792524e-6
allele num: 120814
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.460C>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19997C>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*222C>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.263C>G
  hgvsp: ENSP00000412621.1:p.Ala88Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*222C>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.263C>G
  hgvsp: ENSP00000409708.2:p.Ala88Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.263C>G
  hgvsp: ENSP00000386626.1:p.Ala88Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.263C>G
  hgvsp: ENSP00000308610.5:p.Ala88Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.263C>G
  hgvsp: ENSP00000386425.1:p.Ala88Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.263C>G
  hgvsp: ENSP00000440892.1:p.Ala88Gly
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39765
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala88Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

2-157352716-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352716
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352716
    reference: chr 2
allele count: 1
allele frequency: 8.277186418792524e-6
allele num: 120814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.263C>T
  hgvsp: ENSP00000386626.1:p.Ala88Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.263C>T
  hgvsp: ENSP00000386425.1:p.Ala88Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.263C>T
  hgvsp: ENSP00000409708.2:p.Ala88Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.460C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19997C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.263C>T
  hgvsp: ENSP00000308610.5:p.Ala88Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.263C>T
  hgvsp: ENSP00000440892.1:p.Ala88Val
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*222C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*222C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.263C>T
  hgvsp: ENSP00000412621.1:p.Ala88Val
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6475
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala88Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

2-157352718-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352718
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352718
    reference: chr 2
allele count: 6
allele frequency: 4.978757302177376e-5
allele num: 120512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.265G>A
  hgvsp: ENSP00000412621.1:p.Val89Ile
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.265G>A
  hgvsp: ENSP00000386626.1:p.Val89Ile
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.265G>A
  hgvsp: ENSP00000386425.1:p.Val89Ile
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*224G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.265G>A
  hgvsp: ENSP00000308610.5:p.Val89Ile
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+19999G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.265G>A
  hgvsp: ENSP00000409708.2:p.Val89Ile
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.265G>A
  hgvsp: ENSP00000440892.1:p.Val89Ile
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.462G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*224G>A
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11381
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5939
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val89Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

2-157352728-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352728
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352729
    reference: chr 2
allele count: 3
allele frequency: 2.554974535420464e-5
allele num: 117418
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+2dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+2dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+2dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+2dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20010dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+2dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+2dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+2dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+2dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+2dupT
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20983
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
hgvs: c.274+2dupT
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

2-157352734-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352734
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352735
    reference: chr 2
allele count: 627
allele frequency: 8.448085370125846e-3
allele num: 74218
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+19dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+19dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+19dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20027dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+19dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+19dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+19dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+19dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+19dupT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+19dupT
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11941
  bin: 1.75e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 12258
  bin: 2.25e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 1.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 3.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 2.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6213
  bin: 2.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 14820
  bin: 2.5e0
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 2.75e1
  variant carriers: 99
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

2-157352734-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352734
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352736
    reference: chr 2
allele count: 2
allele frequency: 2.694764073405373e-5
allele num: 74218
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+18_274+19dupTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+18_*233+19dupTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+18_*233+19dupTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+18_274+19dupTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+18_274+19dupTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+18_471+19dupTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+18_274+19dupTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20026_-21+20027dupTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+18_274+19dupTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+18_274+19dupTT
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11941
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14820
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

2-157352734-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352734
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352733
    reference: chr 2
allele count: 25558
allele frequency: 3.443639009404726e-1
allele num: 74218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+19delT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+19delT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+19delT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+19delT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+19delT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+19delT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+19delT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+19delT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20027delT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+19delT
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11941
  bin: 1.75e1
  variant carriers: 6229
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 8.25e1
  variant carriers: 579
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 609
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 1.25e1
  variant carriers: 2885
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 3.25e1
  variant carriers: 1391
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 389
genotype depth: GenotypeDepth
  all individuals: 12258
  bin: 2.25e1
  variant carriers: 6461
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 368
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 2.75e1
  variant carriers: 3516
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.5e0
  variant carriers: 377
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.75e1
  variant carriers: 634
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 473
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 3.75e1
  variant carriers: 696
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 707
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 423
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.75e1
  variant carriers: 454
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 574
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.75e1
  variant carriers: 447
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 541
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 7.5e0
  variant carriers: 334
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 6.75e1
  variant carriers: 1174
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 4.75e1
  variant carriers: 1466
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: CT
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

2-157352734-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352734
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352732
    reference: chr 2
allele count: 123
allele frequency: 1.657279905144305e-3
allele num: 74218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+18_*233+19delTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+18_274+19delTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+18_274+19delTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+18_*233+19delTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+18_274+19delTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+18_274+19delTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+18_471+19delTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20026_-21+20027delTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+18_274+19delTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+18_274+19delTT
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12258
  bin: 2.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11941
  bin: 1.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 4.25e1
  variant carriers: 11
hgvs: c.274+18_274+19delTT
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: CTT
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

2-157352735-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352735
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352735
    reference: chr 2
allele count: 1
allele frequency: 4.800768122899664e-5
allele num: 20830
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+8T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+8T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+8T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+8T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+8T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+8T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+8T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20016T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+8T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+8T>C
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
hgvs: c.274+8T>C
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

2-157352741-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352741
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352741
    reference: chr 2
allele count: 27
allele frequency: 2.717828957964245e-4
allele num: 99344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+14T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+14T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+14T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+14T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+14T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+14T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+14T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+14T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+14T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20022T>C
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9622
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

2-157352741-TTTTTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352741
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352735
    reference: chr 2
allele count: 33
allele frequency: 3.321790948622967e-4
allele num: 99344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+19_*233+24delTATTTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+19_274+24delTATTTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+19_471+24delTATTTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+19_274+24delTATTTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+19_274+24delTATTTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+19_274+24delTATTTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+19_274+24delTATTTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+19_*233+24delTATTTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+19_274+24delTATTTT
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9622
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16884
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3874
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23430
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4014
  bin: 6.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: TTTTTTA
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

2-157352742-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352742
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352742
    reference: chr 2
allele count: 1
allele frequency: 1.004580888853171e-5
allele num: 99544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+15T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+15T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+15T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+15T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+15T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+15T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+15T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+15T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20023T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+15T>A
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1904
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

2-157352742-TTTTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352742
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352737
    reference: chr 2
allele count: 311
allele frequency: 3.12424656433336e-3
allele num: 99544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+21_*233+25delTTTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+21_274+25delTTTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+21_471+25delTTTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+21_274+25delTTTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+21_*233+25delTTTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+21_274+25delTTTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+21_274+25delTTTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+21_274+25delTTTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+21_274+25delTTTTA
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9645
  bin: 2.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 16943
  bin: 1.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 1.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23466
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: TTTTTA
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

2-157352743-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352743
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352743
    reference: chr 2
allele count: 1
allele frequency: 1.023478599062494e-5
allele num: 97706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+16T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+16T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+16T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+16T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+16T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+16T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+16T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20024T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+16T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+16T>A
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

2-157352744-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352744
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352744
    reference: chr 2
allele count: 46
allele frequency: 4.959461790581335e-4
allele num: 92752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+17T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+17T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+17T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+17T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+17T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20025T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+17T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+17T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+17T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+17T>A
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10193
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 21243
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

2-157352744-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352744
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352744
    reference: chr 2
allele count: 1
allele frequency: 1.078143867517682e-5
allele num: 92752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+17T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+17T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+17T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+17T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+17T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+17T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+17T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+17T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20025T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+17T>C
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

2-157352746-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352746
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352746
    reference: chr 2
allele count: 79
allele frequency: 8.805564224887422e-4
allele num: 89716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20027T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+19T>A
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10433
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 21533
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3300
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-157352746-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352746
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352745
    reference: chr 2
allele count: 2
allele frequency: 2.229256765794284e-5
allele num: 89716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+20delA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20028delA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+20delA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+20delA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+20delA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+20delA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+20delA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+20delA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+20delA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+20delA
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21533
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25723
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: TA
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

2-157352747-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352747
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352747
    reference: chr 2
allele count: 11
allele frequency: 1.381944269956531e-4
allele num: 79598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+20A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+20A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+20A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+20A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+20A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+20A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+20A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+20A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+20A>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20028A>T
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22994
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5479
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

2-157352751-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352751
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352751
    reference: chr 2
allele count: 5
allele frequency: 5.993191734189961e-5
allele num: 83428
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+24T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+24T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+24T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+24T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20032T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+24T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+24T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+24T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+24T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+24T>C
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

2-157352773-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157352773
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157352773
    reference: chr 2
allele count: 2
allele frequency: 3.608024245922932e-5
allele num: 55432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl transcript: ENST00000495851
  gene symbol: GPD2
  hgvsc: ENST00000495851.1:n.471+46T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000387475
  ensembl transcript: ENST00000416888
  gene symbol: GPD2
  hgvsc: ENST00000416888.1:c.*233+46T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.274+46T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+20054T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*233+46T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.274+46T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.274+46T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.274+46T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.274+46T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.274+46T>C
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4727
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

2-157367258-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367258
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367258
    reference: chr 2
allele count: 2
allele frequency: 1.659861235600704e-5
allele num: 120492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.275-50C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.275-50C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*234-50C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.275-50C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.275-50C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.275-50C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.275-50C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34539C>T
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9353
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24221
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-157367262-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367262
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367262
    reference: chr 2
allele count: 19
allele frequency: 1.575952621887493e-4
allele num: 120562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.275-46C>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34543C>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*234-46C>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.275-46C>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.275-46C>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.275-46C>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.275-46C>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.275-46C>A
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11146
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10634
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9730
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-157367262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367262
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367262
    reference: chr 2
allele count: 1
allele frequency: 8.294487483618387e-6
allele num: 120562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.275-46C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.275-46C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.275-46C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*234-46C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.275-46C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.275-46C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.275-46C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34543C>T
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4661
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

2-157367271-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367271
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367271
    reference: chr 2
allele count: 162
allele frequency: 1.342215152117717e-3
allele num: 120696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.275-37T>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.275-37T>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.275-37T>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.275-37T>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34552T>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*234-37T>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.275-37T>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.275-37T>G
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12426
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11559
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 3.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24394
  bin: 9.75e1
  variant carriers: 159
genotype quality: GenotypeQuality
  all individuals: 5226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10076
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 2
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

2-157367272-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367272
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367272
    reference: chr 2
allele count: 3
allele frequency: 2.485377694563651e-5
allele num: 120706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34553A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.275-36A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.275-36A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.275-36A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.275-36A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.275-36A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.275-36A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*234-36A>G
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24348
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5277
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

2-157367283-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367283
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367283
    reference: chr 2
allele count: 25
allele frequency: 2.067927275133588e-4
allele num: 120894
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.275-25T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.275-25T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.275-25T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.275-25T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*234-25T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.275-25T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.275-25T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34564T>C
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10318
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4716
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4988
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

2-157367291-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367291
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367291
    reference: chr 2
allele count: 19
allele frequency: 1.569625272619126e-4
allele num: 121048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.275-17G>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.275-17G>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34572G>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.275-17G>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*234-17G>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.275-17G>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.275-17G>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.275-17G>T
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11383
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4739
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4998
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24446
  bin: 9.75e1
  variant carriers: 19
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

2-157367305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367305
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367305
    reference: chr 2
allele count: 7
allele frequency: 5.775291652228438e-5
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34586C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.275-3C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.275-3C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.275-3C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.275-3C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.275-3C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*234-3C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.275-3C>T
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5012
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4765
  bin: 8.25e1
  variant carriers: 0
hgvs: c.275-3C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-157367312-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367312
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367312
    reference: chr 2
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.279A>G
  hgvsp: ENST00000540309.1:c.279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.279A>G
  hgvsp: ENST00000415049.1:c.279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.279A>G
  hgvsp: ENST00000438166.2:c.279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34593A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*238A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.279A>G
  hgvsp: ENST00000409674.1:c.279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.279A>G
  hgvsp: ENST00000310454.6:c.279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.279A>G
  hgvsp: ENST00000409861.1:c.279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11954
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu93Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

2-157367321-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367321
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367321
    reference: chr 2
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.288C>G
  hgvsp: ENST00000310454.6:c.288C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.288C>G
  hgvsp: ENST00000438166.2:c.288C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34602C>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.288C>G
  hgvsp: ENST00000540309.1:c.288C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*247C>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.288C>G
  hgvsp: ENST00000409861.1:c.288C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.288C>G
  hgvsp: ENST00000409674.1:c.288C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.288C>G
  hgvsp: ENST00000415049.1:c.288C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5028
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4775
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5483
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala96Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

2-157367324-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367324
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367324
    reference: chr 2
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.291T>C
  hgvsp: ENST00000415049.1:c.291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.291T>C
  hgvsp: ENST00000409861.1:c.291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.291T>C
  hgvsp: ENST00000409674.1:c.291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.291T>C
  hgvsp: ENST00000540309.1:c.291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34605T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*250T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.291T>C
  hgvsp: ENST00000310454.6:c.291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.291T>C
  hgvsp: ENST00000438166.2:c.291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5029
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu97Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

2-157367331-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367331
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367331
    reference: chr 2
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.298A>G
  hgvsp: ENSP00000386626.1:p.Arg100Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.298A>G
  hgvsp: ENSP00000308610.5:p.Arg100Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*257A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.298A>G
  hgvsp: ENSP00000440892.1:p.Arg100Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.298A>G
  hgvsp: ENSP00000409708.2:p.Arg100Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.298A>G
  hgvsp: ENSP00000386425.1:p.Arg100Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34612A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.298A>G
  hgvsp: ENSP00000412621.1:p.Arg100Gly
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4774
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg100Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-157367335-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367335
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367335
    reference: chr 2
allele count: 25
allele frequency: 2.061073736974014e-4
allele num: 121296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34616A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*261A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.302A>G
  hgvsp: ENSP00000412621.1:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.302A>G
  hgvsp: ENSP00000440892.1:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.302A>G
  hgvsp: ENSP00000386425.1:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.302A>G
  hgvsp: ENSP00000409708.2:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.302A>G
  hgvsp: ENSP00000308610.5:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.302A>G
  hgvsp: ENSP00000386626.1:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10458
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24496
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp101Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

2-157367336-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367336
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367336
    reference: chr 2
allele count: 2
allele frequency: 1.648886177387175e-5
allele num: 121294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.303T>C
  hgvsp: ENST00000540309.1:c.303T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.303T>C
  hgvsp: ENST00000310454.6:c.303T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.303T>C
  hgvsp: ENST00000409674.1:c.303T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.303T>C
  hgvsp: ENST00000409861.1:c.303T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000408522
  ensembl transcript: ENST00000430992
  gene symbol: GPD2
  hgvsc: ENST00000430992.1:c.*262T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.303T>C
  hgvsp: ENST00000438166.2:c.303T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34617T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.303T>C
  hgvsp: ENST00000415049.1:c.303T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10458
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp101Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

2-157367349-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367349
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367349
    reference: chr 2
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.316G>C
  hgvsp: ENSP00000440892.1:p.Gly106Arg
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.316G>C
  hgvsp: ENSP00000409708.2:p.Gly106Arg
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.316G>C
  hgvsp: ENSP00000308610.5:p.Gly106Arg
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.316G>C
  hgvsp: ENSP00000412621.1:p.Gly106Arg
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34630G>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.316G>C
  hgvsp: ENSP00000386425.1:p.Gly106Arg
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.316G>C
  hgvsp: ENSP00000386626.1:p.Gly106Arg
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24497
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly106Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-157367352-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367352
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367352
    reference: chr 2
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34633A>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.319A>C
  hgvsp: ENSP00000308610.5:p.Thr107Pro
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.319A>C
  hgvsp: ENSP00000386626.1:p.Thr107Pro
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.319A>C
  hgvsp: ENSP00000409708.2:p.Thr107Pro
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.319A>C
  hgvsp: ENSP00000412621.1:p.Thr107Pro
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.319A>C
  hgvsp: ENSP00000386425.1:p.Thr107Pro
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.319A>C
  hgvsp: ENSP00000440892.1:p.Thr107Pro
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24498
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr107Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

2-157367353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367353
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367353
    reference: chr 2
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.320C>T
  hgvsp: ENSP00000386425.1:p.Thr107Ile
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.320C>T
  hgvsp: ENSP00000409708.2:p.Thr107Ile
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.320C>T
  hgvsp: ENSP00000440892.1:p.Thr107Ile
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.320C>T
  hgvsp: ENSP00000308610.5:p.Thr107Ile
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.320C>T
  hgvsp: ENSP00000386626.1:p.Thr107Ile
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.320C>T
  hgvsp: ENSP00000412621.1:p.Thr107Ile
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34634C>T
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr107Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

2-157367354-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367354
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367354
    reference: chr 2
allele count: 2
allele frequency: 1.648315421639085e-5
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.321C>T
  hgvsp: ENST00000540309.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34635C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.321C>T
  hgvsp: ENST00000310454.6:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.321C>T
  hgvsp: ENST00000409861.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000412621
  ensembl transcript: ENST00000415049
  gene symbol: GPD2
  hgvsc: ENST00000415049.1:c.321C>T
  hgvsp: ENST00000415049.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.321C>T
  hgvsp: ENST00000438166.2:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.321C>T
  hgvsp: ENST00000409674.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11977
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11467
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3080
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr107Thr
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

2-157367393-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367393
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367393
    reference: chr 2
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.360A>G
  hgvsp: ENST00000540309.1:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.360A>G
  hgvsp: ENST00000438166.2:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.360A>G
  hgvsp: ENST00000409861.1:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.360A>G
  hgvsp: ENST00000409674.1:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34674A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.360A>G
  hgvsp: ENST00000310454.6:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5027
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg120Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

2-157367399-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367399
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367399
    reference: chr 2
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.366G>T
  hgvsp: ENST00000310454.6:c.366G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.366G>T
  hgvsp: ENST00000540309.1:c.366G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.366G>T
  hgvsp: ENST00000409674.1:c.366G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.366G>T
  hgvsp: ENST00000438166.2:c.366G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.366G>T
  hgvsp: ENST00000409861.1:c.366G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34680G>T
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24504
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4776
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11505
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu122Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

2-157367405-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367405
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367405
    reference: chr 2
allele count: 62
allele frequency: 5.108430558302023e-4
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.372G>T
  hgvsp: ENSP00000409708.2:p.Lys124Asn
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.372G>T
  hgvsp: ENSP00000386626.1:p.Lys124Asn
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.372G>T
  hgvsp: ENSP00000386425.1:p.Lys124Asn
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34686G>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.372G>T
  hgvsp: ENSP00000308610.5:p.Lys124Asn
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.372G>T
  hgvsp: ENSP00000440892.1:p.Lys124Asn
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 9.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 10464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys124Asn
num of homozygotes: 1
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

2-157367410-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367410
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367410
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.377T>A
  hgvsp: ENSP00000440892.1:p.Ile126Asn
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.377T>A
  hgvsp: ENSP00000386425.1:p.Ile126Asn
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.377T>A
  hgvsp: ENSP00000386626.1:p.Ile126Asn
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.377T>A
  hgvsp: ENSP00000308610.5:p.Ile126Asn
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.377T>A
  hgvsp: ENSP00000409708.2:p.Ile126Asn
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34691T>A
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24516
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile126Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

2-157367419-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367419
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367418
    reference: chr 2
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34702delG
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.388delG
  hgvsp: ENSP00000440892.1:p.Asp130IlefsTer8
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.388delG
  hgvsp: ENSP00000308610.5:p.Asp130IlefsTer8
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.388delG
  hgvsp: ENSP00000386626.1:p.Asp130IlefsTer8
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.388delG
  hgvsp: ENSP00000409708.2:p.Asp130IlefsTer8
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.388delG
  hgvsp: ENSP00000386425.1:p.Asp130IlefsTer8
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5022
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4774
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp130IlefsTer8
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: TG
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

2-157367422-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367422
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367422
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.389A>G
  hgvsp: ENSP00000386626.1:p.Asp130Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.389A>G
  hgvsp: ENSP00000308610.5:p.Asp130Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34703A>G
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.389A>G
  hgvsp: ENSP00000386425.1:p.Asp130Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.389A>G
  hgvsp: ENSP00000440892.1:p.Asp130Gly
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.389A>G
  hgvsp: ENSP00000409708.2:p.Asp130Gly
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4776
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24517
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5478
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3810
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp130Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-157367430-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367430
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367430
    reference: chr 2
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.397C>A
  hgvsp: ENSP00000308610.5:p.Gln133Lys
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.397C>A
  hgvsp: ENSP00000386626.1:p.Gln133Lys
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.397C>A
  hgvsp: ENSP00000386425.1:p.Gln133Lys
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34711C>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.397C>A
  hgvsp: ENSP00000440892.1:p.Gln133Lys
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.397C>A
  hgvsp: ENSP00000409708.2:p.Gln133Lys
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4776
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln133Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

2-157367440-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367440
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367440
    reference: chr 2
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.399+8T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34721T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.399+8T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.399+8T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.399+8T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.399+8T>C
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24518
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5020
  bin: 7.75e1
  variant carriers: 0
hgvs: c.399+8T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

2-157367441-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367441
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367441
    reference: chr 2
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34722G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.399+9G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.399+9G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.399+9G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.399+9G>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.399+9G>A
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3809
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24518
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11496
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

2-157367444-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367444
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367444
    reference: chr 2
allele count: 31
allele frequency: 2.554257370268444e-4
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.399+12T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34725T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.399+12T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.399+12T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.399+12T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.399+12T>C
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4771
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3070
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5473
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-157367446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367446
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367446
    reference: chr 2
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.399+14C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.399+14C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.399+14C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.399+14C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34727C>T
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.399+14C>T
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3070
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4771
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11483
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5475
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

2-157367450-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367450
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367450
    reference: chr 2
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.399+18T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.399+18T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.399+18T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.399+18T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.399+18T>C
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34731T>C
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13408
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24535
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5012
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5474
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

2-157367451-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367451
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367451
    reference: chr 2
allele count: 3
allele frequency: 2.472024918011174e-5
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.399+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.399+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.399+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.399+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.399+19T>A
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34732T>A
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4769
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11469
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5012
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24536
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

2-157367452-GTTA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 157367452
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 157367449
    reference: chr 2
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000308610
  ensembl transcript: ENST00000310454
  gene symbol: GPD2
  hgvsc: ENST00000310454.6:c.399+21_399+23delTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000409708
  ensembl transcript: ENST00000438166
  gene symbol: GPD2
  hgvsc: ENST00000438166.2:c.399+21_399+23delTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386425
  ensembl transcript: ENST00000409674
  gene symbol: GPD2
  hgvsc: ENST00000409674.1:c.399+21_399+23delTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386626
  ensembl transcript: ENST00000409861
  gene symbol: GPD2
  hgvsc: ENST00000409861.1:c.399+21_399+23delTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000440892
  ensembl transcript: ENST00000540309
  gene symbol: GPD2
  hgvsc: ENST00000540309.1:c.399+21_399+23delTTA
  variant of: http://identifiers.org/hgnc/4456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115159
  ensembl protein: ENSP00000386484
  ensembl transcript: ENST00000409125
  gene symbol: GPD2
  hgvsc: ENST00000409125.4:c.-21+34734_-21+34736delTTA
  variant of: http://identifiers.org/hgnc/4456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11959
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4768
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: GTTA

GenotypeDepth
all individuals: 278
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6367
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42149
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6681
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.527e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.176e0

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

DP
type: SiteQuality
SIO_000300: 1.739413e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

FS
type: SiteQuality
SIO_000300: 2.605e0

MQ
type: SiteQuality
SIO_000300: 5.83e1

VQSLOD
type: SiteQuality
SIO_000300: -2.092e0

GenotypeDepth
all individuals: 403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6681
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6367
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42140
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.740028e6

QD
type: SiteQuality
SIO_000300: 1.673e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.45e0

FS
type: SiteQuality
SIO_000300: 6.595e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.455000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.365e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

GenotypeDepth
all individuals: 72
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6675
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6435
bin: 9.75e1
variant carriers: 81

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736714136853074e-4
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 80
allele frequency: 7.695267410542516e-3
allele num: 10396
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

DP
type: SiteQuality
SIO_000300: 1.743769e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6683
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6359
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501095799933952e-5
allele num: 66618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.4e-2

QD
type: SiteQuality
SIO_000300: 1.438e1

DP
type: SiteQuality
SIO_000300: 1.740668e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.622e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6428
bin: 9.75e1
variant carriers: 91

GenotypeQuality
all individuals: 1563
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6677
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 89
allele frequency: 1.335975261941217e-3
allele num: 66618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518372304889159e-4
allele num: 6586
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 5.51e-1

DP
type: SiteQuality
SIO_000300: 1.745144e6

VQSLOD
type: SiteQuality
SIO_000300: 3.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

GenotypeQuality
all individuals: 246
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42153
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501095799933952e-5
allele num: 66618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

DP
type: SiteQuality
SIO_000300: 1.745144e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

QD
type: SiteQuality
SIO_000300: 1.333e1

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

GenotypeQuality
all individuals: 259
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42202
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6345
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

QD
type: SiteQuality
SIO_000300: 9.59e0

VQSLOD
type: SiteQuality
SIO_000300: -8.459999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.741339e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6681
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6346
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.909e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e0

VQSLOD
type: SiteQuality
SIO_000300: -2.759e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.962e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.740593e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.615e0

QD
type: SiteQuality
SIO_000300: 7.49e0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42042
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6345
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 440
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212268153715602e-4
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.506e0

FS
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.286e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.634e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 1.218e1

DP
type: SiteQuality
SIO_000300: 1.73979e6

GenotypeQuality
all individuals: 432
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6346
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41985
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6684
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.739501e6

VQSLOD
type: SiteQuality
SIO_000300: -2.376e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.563e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.367e0

MQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

QD
type: SiteQuality
SIO_000300: 8.880000000000001e0

GenotypeQuality
all individuals: 3074
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3811
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24515
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11505
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.592e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.229e1

DP
type: SiteQuality
SIO_000300: 2.357427e6

FS
type: SiteQuality
SIO_000300: 2.993e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.84e-1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6684
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42012
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6343
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.693e0

VQSLOD
type: SiteQuality
SIO_000300: -2.359e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.525e0

DP
type: SiteQuality
SIO_000300: 1.739567e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.208e1

GenotypeQuality
all individuals: 6670
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6348
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41776
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.506263706552107e-5
allele num: 66574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.89e-1

FS
type: SiteQuality
SIO_000300: 3.191e0

DP
type: SiteQuality
SIO_000300: 1.738155e6

QD
type: SiteQuality
SIO_000300: 2.038e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.285e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: -7.862e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41494
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6346
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6626
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502313562886846e-5
allele num: 66564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.576000000000001e0

QD
type: SiteQuality
SIO_000300: 1.017e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.81e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

DP
type: SiteQuality
SIO_000300: 1.736311e6

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

GenotypeQuality
all individuals: 1435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41494
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6346
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6626
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502313562886846e-5
allele num: 66564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.81e-1

FS
type: SiteQuality
SIO_000300: 8.576000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

DP
type: SiteQuality
SIO_000300: 1.736311e6

QD
type: SiteQuality
SIO_000300: 1.017e1

GenotypeQuality
all individuals: 906
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6622
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6341
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41330
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.37e-1

DP
type: SiteQuality
SIO_000300: 1.735044e6

MQRankSum
type: SiteQuality
SIO_000300: -3.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.423e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.099e1

FS
type: SiteQuality
SIO_000300: 3.734e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.04e-1

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6341
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.511142522029412e-5
allele num: 66502
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.728724e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.994e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

FS
type: SiteQuality
SIO_000300: 1.148e0

QD
type: SiteQuality
SIO_000300: 9.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.339e0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6475
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6340
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.682416731216112e-5
allele num: 10328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.291e1

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.239e0

DP
type: SiteQuality
SIO_000300: 1.723803e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

FS
type: SiteQuality
SIO_000300: 6.818e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.35e-1

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6340
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39765
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.291e1

DP
type: SiteQuality
SIO_000300: 1.723803e6

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

FS
type: SiteQuality
SIO_000300: 6.818e0

VQSLOD
type: SiteQuality
SIO_000300: 7.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.239e0

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36587
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6339
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 632
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4121
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.645200486026732e-4
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66276
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.83e0

DP
type: SiteQuality
SIO_000300: 1.703633e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

FS
type: SiteQuality
SIO_000300: 6.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.925e1

VQSLOD
type: SiteQuality
SIO_000300: 8.120000000000001e-1

GenotypeQuality
all individuals: 20706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2925
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4438
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4884
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6333
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 617
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.551349674216568e-4
allele num: 6446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.094729675362857e-5
allele num: 64626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 1.66572e6

MQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.324e1

FS
type: SiteQuality
SIO_000300: 7.885e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.58e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 1602
bin: 6.75e1
variant carriers: 18

GenotypeQuality
all individuals: 2107
bin: 1.25e1
variant carriers: 70

GenotypeQuality
all individuals: 1238
bin: 7.25e1
variant carriers: 13

GenotypeQuality
all individuals: 2065
bin: 1.75e1
variant carriers: 84

GenotypeQuality
all individuals: 2950
bin: 7.5e0
variant carriers: 72

GenotypeQuality
all individuals: 2492
bin: 3.25e1
variant carriers: 73

GenotypeQuality
all individuals: 2082
bin: 3.75e1
variant carriers: 73

GenotypeQuality
all individuals: 8493
bin: 9.75e1
variant carriers: 59

GenotypeQuality
all individuals: 1144
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1700
bin: 5.75e1
variant carriers: 31

GenotypeQuality
all individuals: 2502
bin: 6.25e1
variant carriers: 22

GenotypeQuality
all individuals: 2027
bin: 4.25e1
variant carriers: 71

GenotypeQuality
all individuals: 885
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1843
bin: 5.25e1
variant carriers: 34

GenotypeQuality
all individuals: 774
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1948
bin: 4.75e1
variant carriers: 48

GenotypeQuality
all individuals: 1020
bin: 8.25e1
variant carriers: 11

Other
type: Population
allele count: 4
allele frequency: 6.578947368421052e-3
allele num: 608
num of homozygotes: 0

African
type: Population
allele count: 79
allele frequency: 1.348122866894198e-2
allele num: 5860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 285
allele frequency: 7.101210943339812e-3
allele num: 40134
num of homozygotes: 0

East Asian
type: Population
allele count: 53
allele frequency: 1.137339055793991e-2
allele num: 4660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 22
allele frequency: 5.913978494623656e-3
allele num: 3720
num of homozygotes: 0

South Asian
type: Population
allele count: 111
allele frequency: 9.018524536886579e-3
allele num: 12308
num of homozygotes: 0

Latino
type: Population
allele count: 73
allele frequency: 1.053695150115474e-2
allele num: 6928
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.578e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

DP
type: SiteQuality
SIO_000300: 1.694675e6

QD
type: SiteQuality
SIO_000300: 2.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

GenotypeQuality
all individuals: 2082
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6213
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2707
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8493
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.983305925150745e-5
allele num: 40134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3720
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

DP
type: SiteQuality
SIO_000300: 1.694675e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.578e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 2.46e0

GenotypeQuality
all individuals: 1238
bin: 7.25e1
variant carriers: 1076

GenotypeQuality
all individuals: 2502
bin: 6.25e1
variant carriers: 1246

GenotypeQuality
all individuals: 1020
bin: 8.25e1
variant carriers: 943

GenotypeQuality
all individuals: 14820
bin: 2.5e0
variant carriers: 318

GenotypeQuality
all individuals: 1843
bin: 5.25e1
variant carriers: 1431

GenotypeQuality
all individuals: 2027
bin: 4.25e1
variant carriers: 1555

GenotypeQuality
all individuals: 2082
bin: 3.75e1
variant carriers: 1401

GenotypeQuality
all individuals: 2707
bin: 2.75e1
variant carriers: 1133

GenotypeQuality
all individuals: 2107
bin: 1.25e1
variant carriers: 491

GenotypeQuality
all individuals: 2065
bin: 1.75e1
variant carriers: 683

GenotypeQuality
all individuals: 2492
bin: 3.25e1
variant carriers: 1349

GenotypeQuality
all individuals: 774
bin: 9.25e1
variant carriers: 735

GenotypeQuality
all individuals: 8493
bin: 9.75e1
variant carriers: 8319

GenotypeQuality
all individuals: 1144
bin: 7.75e1
variant carriers: 1011

GenotypeQuality
all individuals: 1700
bin: 5.75e1
variant carriers: 1466

GenotypeQuality
all individuals: 885
bin: 8.75e1
variant carriers: 838

GenotypeQuality
all individuals: 6213
bin: 2.25e1
variant carriers: 789

African
type: Population
allele count: 1609
allele frequency: 2.745733788395904e-1
allele num: 5860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13291
allele frequency: 3.311655952558928e-1
allele num: 40134
num of homozygotes: 0

East Asian
type: Population
allele count: 1470
allele frequency: 3.15450643776824e-1
allele num: 4660
num of homozygotes: 0

Latino
type: Population
allele count: 2578
allele frequency: 3.721131639722864e-1
allele num: 6928
num of homozygotes: 0

Other
type: Population
allele count: 215
allele frequency: 3.536184210526316e-1
allele num: 608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1033
allele frequency: 2.776881720430108e-1
allele num: 3720
num of homozygotes: 0

South Asian
type: Population
allele count: 5362
allele frequency: 4.356516087097823e-1
allele num: 12308
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.578e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

QD
type: SiteQuality
SIO_000300: 2.46e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

DP
type: SiteQuality
SIO_000300: 1.694675e6

GenotypeQuality
all individuals: 2107
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2950
bin: 7.5e0
variant carriers: 21

GenotypeQuality
all individuals: 14820
bin: 2.5e0
variant carriers: 14

GenotypeQuality
all individuals: 2492
bin: 3.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2082
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2707
bin: 2.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1843
bin: 5.25e1
variant carriers: 14

GenotypeQuality
all individuals: 2065
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1020
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1144
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 885
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1602
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 774
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6213
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1700
bin: 5.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1238
bin: 7.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1948
bin: 4.75e1
variant carriers: 13

GenotypeQuality
all individuals: 8493
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2502
bin: 6.25e1
variant carriers: 7

East Asian
type: Population
allele count: 9
allele frequency: 1.931330472103004e-3
allele num: 4660
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 2.742494226327945e-3
allele num: 6928
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 9.749756256093598e-4
allele num: 12308
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.194539249146758e-3
allele num: 5860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 5.376344086021505e-4
allele num: 3720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 74
allele frequency: 1.843823192305776e-3
allele num: 40134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

QD
type: SiteQuality
SIO_000300: 2.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.578e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

MQ
type: SiteQuality
SIO_000300: 5.955e1

DP
type: SiteQuality
SIO_000300: 1.694675e6

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

GenotypeQuality
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5650
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14375
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.094544277157196e-5
allele num: 12354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1236
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.357e-1

QD
type: SiteQuality
SIO_000300: 2.26e0

DP
type: SiteQuality
SIO_000300: 7.4337e5

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 23430
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3060
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3874
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 647
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4014
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 9.75e1
variant carriers: 27

East Asian
type: Population
allele count: 27
allele frequency: 4.13856529736358e-3
allele num: 6524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54390
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQ
type: SiteQuality
SIO_000300: 5.551e1

FS
type: SiteQuality
SIO_000300: 1.171e0

QD
type: SiteQuality
SIO_000300: 4.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

DP
type: SiteQuality
SIO_000300: 1.282594e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.07e-1

GenotypeQuality
all individuals: 3060
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 346
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 328
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1127
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 14200
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1932
bin: 7.5e0
variant carriers: 10

GenotypeQuality
all individuals: 395
bin: 1.25e1
variant carriers: 9

GenotypeQuality
all individuals: 350
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 1.75e1
variant carriers: 10

GenotypeQuality
all individuals: 158
bin: 2.5e0
variant carriers: 7

GenotypeQuality
all individuals: 2769
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 385
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1061
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 998
bin: 7.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.776904310111141e-5
allele num: 14756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 5.699577128148557e-4
allele num: 54390
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.293326435592343e-4
allele num: 7732
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQ
type: SiteQuality
SIO_000300: 5.551e1

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.07e-1

QD
type: SiteQuality
SIO_000300: 4.57e0

FS
type: SiteQuality
SIO_000300: 1.171e0

DP
type: SiteQuality
SIO_000300: 1.282594e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

GenotypeQuality
all individuals: 340
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14620
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23466
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.831568921938533e-5
allele num: 54598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7722
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.516e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

QD
type: SiteQuality
SIO_000300: 5.58e0

DP
type: SiteQuality
SIO_000300: 1.279974e6

GenotypeQuality
all individuals: 3027
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3856
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3998
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 363
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1056
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 138
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 987
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 652
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 3009
bin: 9.75e1
variant carriers: 277

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1904
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 308
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 268
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 14620
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1100
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 3
allele frequency: 3.836317135549872e-3
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.537042729787888e-4
allele num: 6506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 255
allele frequency: 4.670500750943258e-3
allele num: 54598
num of homozygotes: 1

South Asian
type: Population
allele count: 6
allele frequency: 4.06669377795852e-4
allele num: 14754
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.165501165501166e-3
allele num: 7722
num of homozygotes: 0

Latino
type: Population
allele count: 29
allele frequency: 3.046218487394958e-3
allele num: 9520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.412928293889085e-3
allele num: 5662
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.516e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

QD
type: SiteQuality
SIO_000300: 5.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.279974e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

GenotypeQuality
all individuals: 1210
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 435
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24305
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3285
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.825938566552901e-5
allele num: 14650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.488e1

VQSLOD
type: SiteQuality
SIO_000300: -8.840000000000001e-2

FS
type: SiteQuality
SIO_000300: 3.397e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

DP
type: SiteQuality
SIO_000300: 1.239451e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

QD
type: SiteQuality
SIO_000300: 3.019e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

GenotypeQuality
all individuals: 2774
bin: 9.75e1
variant carriers: 47

GenotypeQuality
all individuals: 25669
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8211
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 507
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4927
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3019
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4197
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 596
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1606
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.02247191011236e-5
allele num: 14240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.8328611898017e-4
allele num: 7060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

East Asian
type: Population
allele count: 26
allele frequency: 4.400812457684496e-3
allele num: 5908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 3.368471110406595e-4
allele num: 50468
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.872e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: 4.24e0

FS
type: SiteQuality
SIO_000300: 1.179e0

DP
type: SiteQuality
SIO_000300: 1.132244e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.68e-1

GenotypeQuality
all individuals: 2774
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4197
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3019
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4927
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25669
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.98145359435682e-5
allele num: 50468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.132244e6

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.68e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 1.179e0

QD
type: SiteQuality
SIO_000300: 1.194e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.872e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.24e0

GenotypeQuality
all individuals: 2786
bin: 9.75e1
variant carriers: 75

GenotypeQuality
all individuals: 1148
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 732
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 375
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4703
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3911
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 25723
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 638
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8460
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 7.25e1
variant carriers: 2

Latino
type: Population
allele count: 2
allele frequency: 2.352387673488591e-4
allele num: 8502
num of homozygotes: 0

African
type: Population
allele count: 75
allele frequency: 1.098418277680141e-2
allele num: 6828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.110827920743238e-5
allele num: 48652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13972
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

FS
type: SiteQuality
SIO_000300: 2.591e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.121425e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

MQ
type: SiteQuality
SIO_000300: 5.889e1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

GenotypeQuality
all individuals: 8460
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3300
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3911
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4703
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2786
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1433
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 9.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6828
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.43143429716576e-4
allele num: 13972
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.889e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 1.121425e6

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

FS
type: SiteQuality
SIO_000300: 2.591e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

GenotypeQuality
all individuals: 718
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24810
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2440
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4613
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3377
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1933
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3934
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4345
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4866
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.567398119122257e-3
allele num: 638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 6.888106536047758e-4
allele num: 13066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.339509638779712e-5
allele num: 42744
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.46e-2

FS
type: SiteQuality
SIO_000300: 6.919e0

QD
type: SiteQuality
SIO_000300: 4.24e0

DP
type: SiteQuality
SIO_000300: 1.052219e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.227e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.246e0

VQSLOD
type: SiteQuality
SIO_000300: -2.398e0

MQ
type: SiteQuality
SIO_000300: 5.493e1

GenotypeQuality
all individuals: 2495
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5696
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5081
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27780
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4564
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.110864252388358e-4
allele num: 45010
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

QD
type: SiteQuality
SIO_000300: 1.49e1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.154e0

FS
type: SiteQuality
SIO_000300: 1.132e0

MQ
type: SiteQuality
SIO_000300: 5.863e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

DP
type: SiteQuality
SIO_000300: 9.62242e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

GenotypeQuality
all individuals: 11059
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5796
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12196
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8563
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29076
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.800828381055286e-4
allele num: 11106
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.447e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.937e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.42e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.821e0

MQ
type: SiteQuality
SIO_000300: 5.741e1

DP
type: SiteQuality
SIO_000300: 8.0464e5

QD
type: SiteQuality
SIO_000300: 1.494e1

GenotypeQuality
all individuals: 4629
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5789
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4913
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4367
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2882
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016864271276435e-5
allele num: 66294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.291665e6

QD
type: SiteQuality
SIO_000300: 1.368e1

VQSLOD
type: SiteQuality
SIO_000300: 8.98e-1

FS
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.799e0

GenotypeQuality
all individuals: 978
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7771
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24252
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 4661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.657566302652106e-3
allele num: 10256
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743679163034002e-4
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.300663e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.259e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.484e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

GenotypeQuality
all individuals: 1037
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7771
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24252
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5028
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.484e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

QD
type: SiteQuality
SIO_000300: 1.259e1

DP
type: SiteQuality
SIO_000300: 2.300663e6

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4601
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3712
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4866
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.096498867793068e-4
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.325942350332594e-3
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 74
allele frequency: 4.489201650084931e-3
allele num: 16484
num of homozygotes: 1

African
type: Population
allele count: 2
allele frequency: 1.946661475569399e-4
allele num: 10274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 76
allele frequency: 1.144233664558868e-3
allele num: 66420
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 6.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.64e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

DP
type: SiteQuality
SIO_000300: 2.324253e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

QD
type: SiteQuality
SIO_000300: 1.461e1

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4881
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3726
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10337
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4620
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.51616788101403e-5
allele num: 66428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

FS
type: SiteQuality
SIO_000300: 5.796e0

QD
type: SiteQuality
SIO_000300: 1.327e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.326686e6

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5423
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11178
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3774
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24420
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 3050
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.220114842526536e-4
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.405219325937284e-4
allele num: 66522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.331545814875262e-4
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.982e1

QD
type: SiteQuality
SIO_000300: 1.543e1

DP
type: SiteQuality
SIO_000300: 2.341992e6

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3066
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5454
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 1.65188662841245e-3
allele num: 11502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

DP
type: SiteQuality
SIO_000300: 2.346896e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

FS
type: SiteQuality
SIO_000300: 2.425e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.794e0

VQSLOD
type: SiteQuality
SIO_000300: 9.54e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24471
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5468
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3805
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049853020577119e-4
allele num: 66676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.53e0

QD
type: SiteQuality
SIO_000300: 1.378e1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.341e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.350366e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24478
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5019
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11454
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4773
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.91e0

VQSLOD
type: SiteQuality
SIO_000300: -3.667e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.351335e6

FS
type: SiteQuality
SIO_000300: 1.128e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.821e1

MQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24480
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.96e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.16e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.02e-1

DP
type: SiteQuality
SIO_000300: 2.351823e6

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24482
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4774
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5483
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3806
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.058999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

MQ
type: SiteQuality
SIO_000300: 5.882e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.351984e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.104e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e0

MQRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5031
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24483
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11473
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.73e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 2.352236e6

QD
type: SiteQuality
SIO_000300: 1.518e1

FS
type: SiteQuality
SIO_000300: 2.81e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: 3.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

GenotypeQuality
all individuals: 46
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5026
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3804
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4774
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2471
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 5
allele frequency: 4.337265787647467e-4
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 1.826220684352172e-3
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.04e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

QD
type: SiteQuality
SIO_000300: 1.521e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e0

DP
type: SiteQuality
SIO_000300: 2.354086e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5483
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24494
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3807
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5027
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11466
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4774
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

FS
type: SiteQuality
SIO_000300: 4.699e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.259e1

MQRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 2.353722e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.97e-1

GenotypeQuality
all individuals: 11459
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5487
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5028
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4777
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e0

QD
type: SiteQuality
SIO_000300: 1.601e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 5.116e0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

DP
type: SiteQuality
SIO_000300: 2.354334e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5486
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4779
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.155e0

VQSLOD
type: SiteQuality
SIO_000300: -1.229e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 2.354499e6

QD
type: SiteQuality
SIO_000300: 1.094e1

MQ
type: SiteQuality
SIO_000300: 5.884e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.687e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e0

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5027
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5487
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24499
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.733e0

VQSLOD
type: SiteQuality
SIO_000300: -4.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

DP
type: SiteQuality
SIO_000300: 2.354465e6

FS
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

QD
type: SiteQuality
SIO_000300: 6.77e0

GenotypeQuality
all individuals: 2472
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24501
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5486
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3806
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.132e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

QD
type: SiteQuality
SIO_000300: 1.334e1

VQSLOD
type: SiteQuality
SIO_000300: 5.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 2.354659e6

GenotypeQuality
all individuals: 4776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3809
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24503
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

VQSLOD
type: SiteQuality
SIO_000300: -2.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.79e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.355213e6

QD
type: SiteQuality
SIO_000300: 1.142e1

FS
type: SiteQuality
SIO_000300: 9.377000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.14e-1

GenotypeQuality
all individuals: 3810
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2471
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5027
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.662e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 4.36e0

FS
type: SiteQuality
SIO_000300: 4.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.355293e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5023
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11503
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24517
bin: 9.75e1
variant carriers: 61

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 61
allele frequency: 3.694282945736434e-3
allele num: 16512
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.423e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.51e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 2.361178e6

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3810
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5024
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3074
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11504
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5480
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.819e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

FS
type: SiteQuality
SIO_000300: 9.819000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.512e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.357459e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 8.98e0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5483
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3074
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24516
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3810
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.28e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

FS
type: SiteQuality
SIO_000300: 3.448e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQ
type: SiteQuality
SIO_000300: 6.035e1

DP
type: SiteQuality
SIO_000300: 2.357555e6

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3073
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5021
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.058e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.357437e6

QD
type: SiteQuality
SIO_000300: 1.735e1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.072e0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5018
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3809
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24518
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11509
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.068e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.44e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

FS
type: SiteQuality
SIO_000300: 3.391e0

DP
type: SiteQuality
SIO_000300: 2.357408e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.457e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.647e0

GenotypeQuality
all individuals: 5474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4773
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3073
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3809
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.12e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.46e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.672e0

VQSLOD
type: SiteQuality
SIO_000300: 7.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e-1

DP
type: SiteQuality
SIO_000300: 2.357397e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5020
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: -1.798e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.347e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 9.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-1

DP
type: SiteQuality
SIO_000300: 2.357317e6

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
all individuals: 5015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24536
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 2470
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.597402597402597e-4
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 27
allele frequency: 2.59515570934256e-3
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 1.262e0

VQSLOD
type: SiteQuality
SIO_000300: 4.37e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.263e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

DP
type: SiteQuality
SIO_000300: 2.360658e6

GenotypeQuality
all individuals: 3807
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24534
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.207e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 9.79e-1

FS
type: SiteQuality
SIO_000300: 6.4e-1

DP
type: SiteQuality
SIO_000300: 2.359089e6

MQRankSum
type: SiteQuality
SIO_000300: 7.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4770
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11476
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

QD
type: SiteQuality
SIO_000300: 1.2e1

DP
type: SiteQuality
SIO_000300: 2.358912e6

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 1.707e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 1.201e1

FS
type: SiteQuality
SIO_000300: 1.303e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.359225e6

VQSLOD
type: SiteQuality
SIO_000300: 5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.355e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 5012
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24537
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5475
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0