3-145938621-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938621
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938621
    reference: chr 3
allele count: 1
allele frequency: 8.443949066099234e-6
allele num: 118428
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.99C>T
  hgvsp: ENST00000354952.2:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.99C>T
  hgvsp: ENST00000460885.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.99C>T
  hgvsp: ENST00000498625.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.99C>T
  hgvsp: ENST00000476202.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.99C>T
  hgvsp: ENST00000460350.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.99C>T
  hgvsp: ENST00000493382.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.99C>T
  hgvsp: ENST00000481701.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.120C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.99C>T
  hgvsp: ENST00000446574.2:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.54C>T
  hgvsp: ENST00000433593.2:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.99C>T
  hgvsp: ENST00000383083.2:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr33Tyr
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

3-145938624-TTCAGGAGGAGCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938624
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938612
    reference: chr 3
allele count: 1
allele frequency: 8.423038695439767e-6
allele num: 118722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsp: ENSP00000418173.1:p.Asp28_Pro31del
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsp: ENSP00000420385.1:p.Asp28_Pro31del
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsp: ENSP00000419040.1:p.Asp28_Pro31del
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsp: ENSP00000417896.1:p.Asp28_Pro31del
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsp: ENSP00000347038.2:p.Asp28_Pro31del
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsp: ENSP00000418419.1:p.Asp28_Pro31del
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsp: ENSP00000415605.2:p.Asp13_Pro16del
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsp: ENSP00000399315.2:p.Asp28_Pro31del
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsp: ENSP00000372561.2:p.Asp28_Pro31del
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsp: ENSP00000417248.1:p.Asp28_Pro31del
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25214
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp28_Pro31del
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: TTCAGGAGGAGCA
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

3-145938625-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938625
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938625
    reference: chr 3
allele count: 1
allele frequency: 8.420201748033883e-6
allele num: 118762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.95A>C
  hgvsp: ENSP00000418419.1:p.Glu32Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.95A>C
  hgvsp: ENSP00000417896.1:p.Glu32Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.50A>C
  hgvsp: ENSP00000415605.2:p.Glu17Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.95A>C
  hgvsp: ENSP00000420385.1:p.Glu32Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.95A>C
  hgvsp: ENSP00000419040.1:p.Glu32Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.116A>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.95A>C
  hgvsp: ENSP00000418173.1:p.Glu32Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.95A>C
  hgvsp: ENSP00000347038.2:p.Glu32Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.95A>C
  hgvsp: ENSP00000399315.2:p.Glu32Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.95A>C
  hgvsp: ENSP00000417248.1:p.Glu32Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.95A>C
  hgvsp: ENSP00000372561.2:p.Glu32Ala
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu32Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

3-145938629-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938629
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938629
    reference: chr 3
allele count: 1
allele frequency: 8.399549784131571e-6
allele num: 119054
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.91C>G
  hgvsp: ENSP00000347038.2:p.Pro31Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.91C>G
  hgvsp: ENSP00000417896.1:p.Pro31Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.112C>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.91C>G
  hgvsp: ENSP00000399315.2:p.Pro31Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.91C>G
  hgvsp: ENSP00000417248.1:p.Pro31Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.91C>G
  hgvsp: ENSP00000420385.1:p.Pro31Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.91C>G
  hgvsp: ENSP00000372561.2:p.Pro31Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.91C>G
  hgvsp: ENSP00000418173.1:p.Pro31Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.91C>G
  hgvsp: ENSP00000419040.1:p.Pro31Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.46C>G
  hgvsp: ENSP00000415605.2:p.Pro16Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.91C>G
  hgvsp: ENSP00000418419.1:p.Pro31Ala
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25616
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro31Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

3-145938630-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938630
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938630
    reference: chr 3
allele count: 3
allele frequency: 2.51906089409868e-5
allele num: 119092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.90T>A
  hgvsp: ENST00000498625.1:c.90T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.90T>A
  hgvsp: ENST00000460350.1:c.90T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.90T>A
  hgvsp: ENST00000446574.2:c.90T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.45T>A
  hgvsp: ENST00000433593.2:c.45T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.90T>A
  hgvsp: ENST00000383083.2:c.90T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.90T>A
  hgvsp: ENST00000354952.2:c.90T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.111T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.90T>A
  hgvsp: ENST00000493382.1:c.90T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.90T>A
  hgvsp: ENST00000460885.1:c.90T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.90T>A
  hgvsp: ENST00000476202.1:c.90T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.90T>A
  hgvsp: ENST00000481701.1:c.90T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25619
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro30Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

3-145938677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938677
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938677
    reference: chr 3
allele count: 6
allele frequency: 5.077688636132832e-5
allele num: 118164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.43G>A
  hgvsp: ENSP00000418419.1:p.Glu15Lys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.64G>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.43G>A
  hgvsp: ENSP00000419040.1:p.Glu15Lys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.43G>A
  hgvsp: ENSP00000417248.1:p.Glu15Lys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.43G>A
  hgvsp: ENSP00000347038.2:p.Glu15Lys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.43G>A
  hgvsp: ENSP00000372561.2:p.Glu15Lys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.43G>A
  hgvsp: ENSP00000420385.1:p.Glu15Lys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.43G>A
  hgvsp: ENSP00000417896.1:p.Glu15Lys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.43G>A
  hgvsp: ENSP00000399315.2:p.Glu15Lys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.43G>A
  hgvsp: ENSP00000418173.1:p.Glu15Lys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-3G>A
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6407
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24874
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20600
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu15Lys
num of homozygotes: 1
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

3-145938682-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938682
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938682
    reference: chr 3
allele count: 1
allele frequency: 8.489396743467409e-6
allele num: 117794
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.38C>T
  hgvsp: ENSP00000418419.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.38C>T
  hgvsp: ENSP00000417896.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.38C>T
  hgvsp: ENSP00000420385.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.38C>T
  hgvsp: ENSP00000372561.2:p.Ala13Val
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.38C>T
  hgvsp: ENSP00000417248.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.38C>T
  hgvsp: ENSP00000418173.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.38C>T
  hgvsp: ENSP00000419040.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-8C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.38C>T
  hgvsp: ENSP00000399315.2:p.Ala13Val
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.59C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.38C>T
  hgvsp: ENSP00000347038.2:p.Ala13Val
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala13Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

3-145938691-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938691
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938691
    reference: chr 3
allele count: 1
allele frequency: 8.576623554838932e-6
allele num: 116596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.29A>G
  hgvsp: ENSP00000420385.1:p.Glu10Gly
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.29A>G
  hgvsp: ENSP00000419040.1:p.Glu10Gly
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.29A>G
  hgvsp: ENSP00000418419.1:p.Glu10Gly
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.29A>G
  hgvsp: ENSP00000417248.1:p.Glu10Gly
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.29A>G
  hgvsp: ENSP00000418173.1:p.Glu10Gly
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-17A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.29A>G
  hgvsp: ENSP00000399315.2:p.Glu10Gly
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.29A>G
  hgvsp: ENSP00000347038.2:p.Glu10Gly
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.29A>G
  hgvsp: ENSP00000417896.1:p.Glu10Gly
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.29A>G
  hgvsp: ENSP00000372561.2:p.Glu10Gly
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.50A>G
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu10Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

3-145938693-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938693
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938693
    reference: chr 3
allele count: 61
allele frequency: 5.246228735572871e-4
allele num: 116274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.27T>A
  hgvsp: ENST00000498625.1:c.27T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.27T>A
  hgvsp: ENST00000460885.1:c.27T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.27T>A
  hgvsp: ENST00000460350.1:c.27T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.27T>A
  hgvsp: ENST00000493382.1:c.27T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.27T>A
  hgvsp: ENST00000354952.2:c.27T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.27T>A
  hgvsp: ENST00000476202.1:c.27T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.27T>A
  hgvsp: ENST00000383083.2:c.27T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-19T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.27T>A
  hgvsp: ENST00000481701.1:c.27T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.27T>A
  hgvsp: ENST00000446574.2:c.27T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.48T>A
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23515
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Pro9Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

3-145938701-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938701
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938701
    reference: chr 3
allele count: 4
allele frequency: 3.476930565696603e-5
allele num: 115044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.40A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.19A>G
  hgvsp: ENSP00000419040.1:p.Thr7Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-27A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.19A>G
  hgvsp: ENSP00000420385.1:p.Thr7Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.19A>G
  hgvsp: ENSP00000418173.1:p.Thr7Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.19A>G
  hgvsp: ENSP00000372561.2:p.Thr7Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.19A>G
  hgvsp: ENSP00000418419.1:p.Thr7Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.19A>G
  hgvsp: ENSP00000417896.1:p.Thr7Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.19A>G
  hgvsp: ENSP00000347038.2:p.Thr7Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.19A>G
  hgvsp: ENSP00000417248.1:p.Thr7Ala
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.19A>G
  hgvsp: ENSP00000399315.2:p.Thr7Ala
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22816
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5795
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19374
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr7Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

3-145938711-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938711
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938711
    reference: chr 3
allele count: 1
allele frequency: 8.905829756158382e-6
allele num: 112286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-37T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.9T>C
  hgvsp: ENST00000446574.2:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.9T>C
  hgvsp: ENST00000476202.1:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.9T>C
  hgvsp: ENST00000460885.1:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.9T>C
  hgvsp: ENST00000383083.2:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.9T>C
  hgvsp: ENST00000498625.1:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.9T>C
  hgvsp: ENST00000354952.2:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.9T>C
  hgvsp: ENST00000460350.1:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.30T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.9T>C
  hgvsp: ENST00000493382.1:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.9T>C
  hgvsp: ENST00000481701.1:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5496
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.9T>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

3-145938712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938712
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938712
    reference: chr 3
allele count: 1
allele frequency: 8.933995640210128e-6
allele num: 111932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.8G>A
  hgvsp: ENSP00000418173.1:p.Gly3Asp
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.8G>A
  hgvsp: ENSP00000420385.1:p.Gly3Asp
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.8G>A
  hgvsp: ENSP00000347038.2:p.Gly3Asp
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.8G>A
  hgvsp: ENSP00000419040.1:p.Gly3Asp
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.8G>A
  hgvsp: ENSP00000399315.2:p.Gly3Asp
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.8G>A
  hgvsp: ENSP00000417896.1:p.Gly3Asp
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38G>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.8G>A
  hgvsp: ENSP00000372561.2:p.Gly3Asp
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.29G>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.8G>A
  hgvsp: ENSP00000417248.1:p.Gly3Asp
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.8G>A
  hgvsp: ENSP00000418419.1:p.Gly3Asp
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly3Asp
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-145938728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938728
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938728
    reference: chr 3
allele count: 2
allele frequency: 1.918649270913277e-5
allele num: 104240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.8-16C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.8-16C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-16C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.8-16C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.29-16C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.8-16C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.8-16C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.8-16C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.8-16C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.8-16C>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.8-16C>T
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7939
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

3-145938754-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145938754
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145938754
    reference: chr 3
allele count: 1
allele frequency: 1.19517150711127e-5
allele num: 83670
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.29-42A>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.8-42A>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.8-42A>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.8-42A>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.8-42A>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.8-42A>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.8-42A>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.8-42A>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.8-42A>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.8-42A>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-42A>C
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4469
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

3-145939809-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939809
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939809
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 45818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.7+43T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.28+43T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.7+43T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.7+43T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.7+43T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.7+43T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.7+43T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.7+43T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.7+43T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1097T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.7+43T>C
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12853
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23599
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3263
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

3-145939821-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939821
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939821
    reference: chr 3
allele count: 4
allele frequency: 8.688474738259699e-5
allele num: 46038
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.7+31T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.7+31T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.28+31T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.7+31T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.7+31T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.7+31T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.7+31T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.7+31T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1109T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.7+31T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.7+31T>C
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10392
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

3-145939832-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939832
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939831
    reference: chr 3
allele count: 1
allele frequency: 2.151185303102009e-5
allele num: 46486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1121delA
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.7+19delA
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.7+19delA
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.7+19delA
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.7+19delA
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.7+19delA
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.7+19delA
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.28+19delA
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.7+19delA
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.7+19delA
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.7+19delA
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9090
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11074
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: AT
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

3-145939847-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939847
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939847
    reference: chr 3
allele count: 84
allele frequency: 1.791808873720137e-3
allele num: 46880
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.7+5G>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.7+5G>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.7+5G>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.28+5G>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1135G>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.7+5G>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.7+5G>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.7+5G>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.7+5G>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.7+5G>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.7+5G>C
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 9354
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25307
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8477
  bin: 1.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: c.7+5G>C
num of homozygotes: 2
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/3-145939852-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939852
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939852
    reference: chr 3
allele count: 5
allele frequency: 1.069930668492682e-4
allele num: 46732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.7G>T
  hgvsp: ENSP00000418419.1:p.Gly3Cys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.7G>T
  hgvsp: ENSP00000420385.1:p.Gly3Cys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1140G>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.7G>T
  hgvsp: ENSP00000418173.1:p.Gly3Cys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.7G>T
  hgvsp: ENSP00000417248.1:p.Gly3Cys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.7G>T
  hgvsp: ENSP00000372561.2:p.Gly3Cys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.7G>T
  hgvsp: ENSP00000417896.1:p.Gly3Cys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.28G>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.7G>T
  hgvsp: ENSP00000347038.2:p.Gly3Cys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.7G>T
  hgvsp: ENSP00000399315.2:p.Gly3Cys
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.7G>T
  hgvsp: ENSP00000419040.1:p.Gly3Cys
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8666
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25114
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly3Cys
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

3-145939855-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939855
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939855
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 46698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.4T>A
  hgvsp: ENSP00000418173.1:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.4T>A
  hgvsp: ENSP00000419040.1:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.4T>A
  hgvsp: ENSP00000420385.1:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1143T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.4T>A
  hgvsp: ENSP00000372561.2:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.4T>A
  hgvsp: ENSP00000417896.1:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.25T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.4T>A
  hgvsp: ENSP00000347038.2:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.4T>A
  hgvsp: ENSP00000399315.2:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.4T>A
  hgvsp: ENSP00000418419.1:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.4T>A
  hgvsp: ENSP00000417248.1:p.Ser2Thr
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24910
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser2Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

3-145939856-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939856
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939856
    reference: chr 3
allele count: 217
allele frequency: 4.643697838647549e-3
allele num: 46730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.3G>C
  hgvsp: ENSP00000417896.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.3G>C
  hgvsp: ENSP00000419040.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.3G>C
  hgvsp: ENSP00000417248.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.24G>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.3G>C
  hgvsp: ENSP00000372561.2:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.3G>C
  hgvsp: ENSP00000347038.2:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.3G>C
  hgvsp: ENSP00000399315.2:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.3G>C
  hgvsp: ENSP00000418173.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.3G>C
  hgvsp: ENSP00000418419.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.3G>C
  hgvsp: ENSP00000420385.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1144G>C
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24791
  bin: 7.5e0
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 1.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 11180
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8693
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 2
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

3-145939857-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939857
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939857
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 46372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.2T>C
  hgvsp: ENSP00000419040.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.2T>C
  hgvsp: ENSP00000418173.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.2T>C
  hgvsp: ENSP00000420385.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.2T>C
  hgvsp: ENSP00000417896.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.2T>C
  hgvsp: ENSP00000418419.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1145T>C
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.2T>C
  hgvsp: ENSP00000347038.2:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.2T>C
  hgvsp: ENSP00000372561.2:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.2T>C
  hgvsp: ENSP00000417248.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.2T>C
  hgvsp: ENSP00000399315.2:p.Met1?
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.23T>C
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: start lost
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24611
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

3-145939878-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939878
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939878
    reference: chr 3
allele count: 18
allele frequency: 4.033703836500538e-4
allele num: 44624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.-20A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.-20A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.-20A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114698
  ensembl transcript: ENST00000475019
  gene symbol: PLSCR4
  hgvsc: ENST00000475019.1:n.2A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.-20A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1166A>G
  variant of: http://identifiers.org/hgnc/16497
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22384
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11453
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-20A>G
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

3-145939890-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939890
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939890
    reference: chr 3
allele count: 2
allele frequency: 4.670278348589576e-5
allele num: 42824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.-32T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.-21-11T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.-21-11T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.-21-11T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.-21-11T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.-21-11T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.-21-11T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1178T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.-21-11T>A
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.-21-11T>A
  variant of: http://identifiers.org/hgnc/16497
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11925
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/3-145939892-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939892
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939892
    reference: chr 3
allele count: 93
allele frequency: 2.172085201793722e-3
allele num: 42816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.-34T>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.-21-13T>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.-21-13T>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.-21-13T>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.-21-13T>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.-21-13T>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1180T>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.-21-13T>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.-21-13T>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.-21-13T>G
  variant of: http://identifiers.org/hgnc/16497
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11931
  bin: 1.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21189
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16051
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21404
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.25e1
  variant carriers: 2
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-145939895-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939895
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939895
    reference: chr 3
allele count: 3
allele frequency: 7.186661556151782e-5
allele num: 41744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.-21-16A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.-21-16A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.-21-16A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.-37A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.-21-16A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.-21-16A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.-21-16A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.-21-16A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.-21-16A>G
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1183A>G
  variant of: http://identifiers.org/hgnc/16497
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/3-145939903-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 145939903
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 145939903
    reference: chr 3
allele count: 2
allele frequency: 5.16422226812642e-5
allele num: 38728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417896
  ensembl transcript: ENST00000460350
  gene symbol: PLSCR4
  hgvsc: ENST00000460350.1:c.-21-24G>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418419
  ensembl transcript: ENST00000481701
  gene symbol: PLSCR4
  hgvsc: ENST00000481701.1:c.-21-24G>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000415605
  ensembl transcript: ENST00000433593
  gene symbol: PLSCR4
  hgvsc: ENST00000433593.2:c.-38-1191G>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000420385
  ensembl transcript: ENST00000460885
  gene symbol: PLSCR4
  hgvsc: ENST00000460885.1:c.-21-24G>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000399315
  ensembl transcript: ENST00000446574
  gene symbol: PLSCR4
  hgvsc: ENST00000446574.2:c.-21-24G>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000419040
  ensembl transcript: ENST00000493382
  gene symbol: PLSCR4
  hgvsc: ENST00000493382.1:c.-21-24G>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000418173
  ensembl transcript: ENST00000476202
  gene symbol: PLSCR4
  hgvsc: ENST00000476202.1:c.-21-24G>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000347038
  ensembl transcript: ENST00000354952
  gene symbol: PLSCR4
  hgvsc: ENST00000354952.2:c.-21-24G>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000417248
  ensembl transcript: ENST00000498625
  gene symbol: PLSCR4
  hgvsc: ENST00000498625.1:c.-45G>T
  variant of: http://identifiers.org/hgnc/16497
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114698
  ensembl protein: ENSP00000372561
  ensembl transcript: ENST00000383083
  gene symbol: PLSCR4
  hgvsc: ENST00000383083.2:c.-21-24G>T
  variant of: http://identifiers.org/hgnc/16497
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22263
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15083
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

3-146113662-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146113662
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146113661
    reference: chr 3
allele count: 1
allele frequency: 1.636125654450262e-4
allele num: 6112
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241358
  ensembl transcript: ENST00000490344
  gene symbol: RP11-758I14.3
  hgvsc: ENST00000490344.1:n.389delC
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.*29delC
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241358
  ensembl transcript: ENST00000482888
  gene symbol: RP11-758I14.3
  hgvsc: ENST00000482888.1:n.501delC
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: TG
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-146113691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146113691
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146113691
    reference: chr 3
allele count: 49
allele frequency: 7.18475073313783e-3
allele num: 6820
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241358
  ensembl transcript: ENST00000490344
  gene symbol: RP11-758I14.3
  hgvsc: ENST00000490344.1:n.361G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.*1G>A
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241358
  ensembl transcript: ENST00000482888
  gene symbol: RP11-758I14.3
  hgvsc: ENST00000482888.1:n.473G>A
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 3
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-146159535-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159535
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159535
    reference: chr 3
allele count: 1
allele frequency: 8.650818367417557e-6
allele num: 115596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16663C>A
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.*34+10C>A
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.*34+10C>A
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6141
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26947
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5638
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

3-146159540-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159540
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159540
    reference: chr 3
allele count: 1
allele frequency: 8.645134518293105e-6
allele num: 115672
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.*34+5G>A
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16658G>A
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.*34+5G>A
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6141
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3670
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 5679
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 7.25e1
  variant carriers: 0
hgvs: c.*34+5G>A
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

3-146159545-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159545
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159545
    reference: chr 3
allele count: 3
allele frequency: 2.592285358772293e-5
allele num: 115728
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.*34T>C
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.*34T>C
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16653T>C
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16798
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6139
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 31120
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 581
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
hgvs: c.*34T>C
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-146159552-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159552
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159552
    reference: chr 3
allele count: 1
allele frequency: 8.652315359590226e-6
allele num: 115576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.*27G>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16646G>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.*27G>T
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6136
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5615
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31364
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

3-146159558-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159558
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159558
    reference: chr 3
allele count: 375
allele frequency: 3.244449827827863e-3
allele num: 115582
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.*21G>A
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16640G>A
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.*21G>A
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 17366
  bin: 2.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 3.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 21143
  bin: 2.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 4.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 3.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32522
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6418
  bin: 9.75e1
  variant carriers: 353
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5591
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 9
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

3-146159561-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159561
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159559
    reference: chr 3
allele count: 1
allele frequency: 8.649920420732129e-6
allele num: 115608
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.*16_*17delAG
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16635_100+16636delAG
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.*16_*17delAG
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17583
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33630
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5650
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 674
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
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genotype quality: GenotypeQuality
  all individuals: 724
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 3917
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 118
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genotype quality: GenotypeQuality
  all individuals: 480
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
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genotype quality: GenotypeQuality
  all individuals: 937
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6078
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: ACT
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/3-146159562-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159562
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159562
    reference: chr 3
allele count: 1
allele frequency: 8.653064049980097e-6
allele num: 115566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16636G>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.*17G>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.*17G>T
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33404
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5656
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3961
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6077
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 871
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-146159579-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159579
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159579
    reference: chr 3
allele count: 1
allele frequency: 8.69882913759808e-6
allele num: 114958
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: stop_retained_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.894A>G
  hgvsp: ENST00000497985.1:c.894A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.675A>G
  hgvsp: ENST00000336685.2:c.675A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16619A>G
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33015
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6077
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ter298Ter
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

3-146159589-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159589
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159588
    reference: chr 3
allele count: 3
allele frequency: 2.624350473257869e-5
allele num: 114314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.664delA
  hgvsp: ENSP00000338707.2:p.Arg222GlufsTer61
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16608delA
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.883delA
  hgvsp: ENSP00000420132.1:p.Arg295GlufsTer?
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19792
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 661
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1365
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 227
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genotype quality: GenotypeQuality
  all individuals: 562
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genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 5276
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genotype quality: GenotypeQuality
  all individuals: 668
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genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 928
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg295GlufsTer?
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: CT
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-146159604-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159604
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159604
    reference: chr 3
allele count: 2
allele frequency: 1.779422755258194e-5
allele num: 112396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16594A>G
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.869A>G
  hgvsp: ENSP00000420132.1:p.Tyr290Cys
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.650A>G
  hgvsp: ENSP00000338707.2:p.Tyr217Cys
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 372
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genotype quality: GenotypeQuality
  all individuals: 872
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1900
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 916
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genotype quality: GenotypeQuality
  all individuals: 6069
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4900
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr290Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-146159611-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159611
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159611
    reference: chr 3
allele count: 1
allele frequency: 8.962661551974475e-6
allele num: 111574
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.865-3C>G
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.646-3C>G
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16587C>G
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16229
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2808
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8040
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
hgvs: c.865-3C>G
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-146159621-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159621
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159621
    reference: chr 3
allele count: 1
allele frequency: 9.070294784580499e-6
allele num: 110250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.646-13T>C
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16577T>C
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.865-13T>C
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19603
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6061
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9313
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

3-146159630-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159630
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159630
    reference: chr 3
allele count: 1
allele frequency: 9.13342101417507e-6
allele num: 109488
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.646-22C>G
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.865-22C>G
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16568C>G
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1799
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1376
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-146159633-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159633
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159633
    reference: chr 3
allele count: 1
allele frequency: 9.158851113716295e-6
allele num: 109184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.646-25T>C
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.865-25T>C
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16565T>C
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11231
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9786
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3553
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1374
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6063
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

3-146159633-ATGAAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159633
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159628
    reference: chr 3
allele count: 5
allele frequency: 4.579425556858148e-5
allele num: 109184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.646-30_646-26delATTCA
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.865-30_865-26delATTCA
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7405
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11231
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
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genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5623
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 5
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: ATGAAT
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-146159634-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159634
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159634
    reference: chr 3
allele count: 1
allele frequency: 9.161704076958313e-6
allele num: 109150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.646-26A>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.865-26A>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16564A>T
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11214
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5616
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16623
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/3-146159645-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159645
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159645
    reference: chr 3
allele count: 1
allele frequency: 9.260974254491573e-6
allele num: 107980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16553T>G
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.865-37T>G
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.646-37T>G
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 172
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-146159648-CCAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159648
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159644
    reference: chr 3
allele count: 1
allele frequency: 9.327662114767555e-6
allele num: 107208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.646-44_646-41delTTTG
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.865-44_865-41delTTTG
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16546_100+16549delTTTG
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
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genotype depth: GenotypeDepth
  all individuals: 734
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: CCAAA
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

3-146159655-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146159655
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146159655
    reference: chr 3
allele count: 1
allele frequency: 9.42933655188021e-6
allele num: 106052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+16543C>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.865-47C>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.646-47C>T
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13282
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3011
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-146166953-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146166953
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146166953
    reference: chr 3
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9245T>G
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.645+40T>G
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.864+40T>G
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-146166958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146166958
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146166958
    reference: chr 3
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.645+35G>A
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9240G>A
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.864+35G>A
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 3.25e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30740
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9973
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-146166962-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146166962
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146166963
    reference: chr 3
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9235dupA
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.864+30dupA
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.645+30dupA
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30739
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 39
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genotype quality: GenotypeQuality
  all individuals: 3487
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genotype quality: GenotypeQuality
  all individuals: 3602
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10165
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS

3-146166975-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146166975
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146166975
    reference: chr 3
allele count: 7
allele frequency: 5.768153202149049e-5
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.645+18A>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.864+18A>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9223A>T
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8192
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1837
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3599
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

3-146166981-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146166981
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146166981
    reference: chr 3
allele count: 46
allele frequency: 3.790188355882207e-4
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.645+12C>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9217C>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.864+12C>T
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4918
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-146166984-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146166984
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146166984
    reference: chr 3
allele count: 5
allele frequency: 4.119498409873614e-5
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.645+9A>G
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9214A>G
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.864+9A>G
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8193
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30717
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10485
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

3-146166986-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146166986
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146166986
    reference: chr 3
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9212C>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.864+7C>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.645+7C>T
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8191
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4303
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10486
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4930
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30715
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: c.864+7C>T
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

3-146166994-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146166994
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146166994
    reference: chr 3
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.863T>C
  hgvsp: ENSP00000420132.1:p.Ile288Thr
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9204T>C
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.644T>C
  hgvsp: ENSP00000338707.2:p.Ile215Thr
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10509
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30713
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile288Thr
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/3-146167004-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167004
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167004
    reference: chr 3
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.634T>G
  hgvsp: ENSP00000338707.2:p.Cys212Gly
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.853T>G
  hgvsp: ENSP00000420132.1:p.Cys285Gly
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9194T>G
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10528
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4932
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30712
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Cys285Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

3-146167006-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167006
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167006
    reference: chr 3
allele count: 7
allele frequency: 5.766442599182813e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.632C>T
  hgvsp: ENSP00000338707.2:p.Ala211Val
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.851C>T
  hgvsp: ENSP00000420132.1:p.Ala284Val
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9192C>T
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8193
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10533
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30713
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4932
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala284Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/3-146167007-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167007
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167007
    reference: chr 3
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.631G>T
  hgvsp: ENSP00000338707.2:p.Ala211Ser
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9191G>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.850G>T
  hgvsp: ENSP00000420132.1:p.Ala284Ser
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30707
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala284Ser
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

3-146167019-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167019
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167019
    reference: chr 3
allele count: 25
allele frequency: 2.059477716451108e-4
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9179G>A
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.619G>A
  hgvsp: ENSP00000338707.2:p.Val207Met
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.838G>A
  hgvsp: ENSP00000420132.1:p.Val280Met
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8202
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4935
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 3487
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genotype quality: GenotypeQuality
  all individuals: 13
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30707
  bin: 9.75e1
  variant carriers: 25
hgvs: p.Val280Met
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

3-146167020-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167020
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167020
    reference: chr 3
allele count: 12
allele frequency: 9.885330170027679e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.837C>T
  hgvsp: ENST00000497985.1:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.618C>T
  hgvsp: ENST00000336685.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9178C>T
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8200
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3496
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30699
  bin: 9.75e1
  variant carriers: 12
hgvs: p.Ala279Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-146167034-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167034
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167034
    reference: chr 3
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.604G>C
  hgvsp: ENSP00000338707.2:p.Val202Leu
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9164G>C
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.823G>C
  hgvsp: ENSP00000420132.1:p.Val275Leu
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4942
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30691
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val275Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-146167039-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167039
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167039
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.818T>C
  hgvsp: ENSP00000420132.1:p.Leu273Pro
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.599T>C
  hgvsp: ENSP00000338707.2:p.Leu200Pro
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9159T>C
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10532
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30690
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4942
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu273Pro
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

3-146167049-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167049
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167049
    reference: chr 3
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9149C>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.589C>T
  hgvsp: ENSP00000338707.2:p.Pro197Ser
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.808C>T
  hgvsp: ENSP00000420132.1:p.Pro270Ser
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30690
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3499
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro270Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

3-146167053-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167053
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167053
    reference: chr 3
allele count: 242
allele frequency: 1.993443055075042e-3
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9145A>G
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.585A>G
  hgvsp: ENST00000336685.2:c.585A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.804A>G
  hgvsp: ENST00000497985.1:c.804A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 9.75e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 10534
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4940
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 30705
  bin: 9.75e1
  variant carriers: 242
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3604
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln268Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum

3-146167076-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167076
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167076
    reference: chr 3
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.562G>C
  hgvsp: ENSP00000338707.2:p.Asp188His
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.781G>C
  hgvsp: ENSP00000420132.1:p.Asp261His
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9122G>C
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8187
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30601
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10595
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp261His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

3-146167084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167084
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167084
    reference: chr 3
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.554C>T
  hgvsp: ENSP00000338707.2:p.Ala185Val
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.773C>T
  hgvsp: ENSP00000420132.1:p.Ala258Val
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9114C>T
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10569
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30601
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3498
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala258Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

3-146167086-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167086
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167086
    reference: chr 3
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.771G>A
  hgvsp: ENST00000497985.1:c.771G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.552G>A
  hgvsp: ENST00000336685.2:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9112G>A
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8187
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4949
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30600
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10576
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3498
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu257Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

3-146167089-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167089
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167089
    reference: chr 3
allele count: 1759
allele frequency: 1.44933506912974e-2
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9109A>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.768A>T
  hgvsp: ENSP00000420132.1:p.Arg256Ser
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.549A>T
  hgvsp: ENSP00000338707.2:p.Arg183Ser
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9475
  bin: 9.75e1
  variant carriers: 1651
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30726
  bin: 9.75e1
  variant carriers: 1722
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3584
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg256Ser
num of homozygotes: 37
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/3-146167104-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167104
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167104
    reference: chr 3
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.534G>T
  hgvsp: ENSP00000338707.2:p.Trp178Cys
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9094G>T
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.753G>T
  hgvsp: ENSP00000420132.1:p.Trp251Cys
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10644
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29954
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Trp251Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

3-146167105-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167105
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167105
    reference: chr 3
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.533G>A
  hgvsp: ENSP00000338707.2:p.Trp178Ter
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9093G>A
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.752G>A
  hgvsp: ENSP00000420132.1:p.Trp251Ter
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3611
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29953
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Trp251Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

3-146167129-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167129
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167129
    reference: chr 3
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9069T>C
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.728T>C
  hgvsp: ENSP00000420132.1:p.Val243Ala
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.509T>C
  hgvsp: ENSP00000338707.2:p.Val170Ala
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4983
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29953
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10306
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val243Ala
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

3-146167130-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 146167130
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 146167130
    reference: chr 3
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000338707
  ensembl transcript: ENST00000336685
  gene symbol: PLSCR2
  hgvsc: ENST00000336685.2:c.508G>C
  hgvsp: ENSP00000338707.2:p.Val170Leu
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000419669
  ensembl transcript: ENST00000463633
  gene symbol: PLSCR2
  hgvsc: ENST00000463633.1:c.100+9068G>C
  variant of: http://identifiers.org/hgnc/16494
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163746
  ensembl protein: ENSP00000420132
  ensembl transcript: ENST00000497985
  gene symbol: PLSCR2
  hgvsc: ENST00000497985.1:c.727G>C
  hgvsp: ENSP00000420132.1:p.Val243Leu
  variant of: http://identifiers.org/hgnc/16494
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3604
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3658
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val243Leu
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 186
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40821
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3598
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.920634920634921e-5
allele num: 10080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.714319e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.841e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 2.664e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

QD
type: SiteQuality
SIO_000300: 1.207e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6294
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528117359413203e-5
allele num: 65440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.717234e6

FS
type: SiteQuality
SIO_000300: 6.38e0

MQRankSum
type: SiteQuality
SIO_000300: -2.168e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e0

MQ
type: SiteQuality
SIO_000300: 5.263e1

QD
type: SiteQuality
SIO_000300: 3.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeDepth
all individuals: 1361
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3596
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527697149317119e-5
allele num: 65458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.999e0

DP
type: SiteQuality
SIO_000300: 1.717845e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.245e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

QD
type: SiteQuality
SIO_000300: 4.31e0

GenotypeDepth
all individuals: 151
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variant carriers: 0

GenotypeQuality
all individuals: 6285
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 42653
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GenotypeQuality
all individuals: 278
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.721783e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.973e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: -2.647e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.449e1

GenotypeDepth
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 262
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1620
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variant carriers: 0

GenotypeQuality
all individuals: 1547
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variant carriers: 0

GenotypeQuality
all individuals: 717
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 23
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6295
bin: 6.75e1
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GenotypeQuality
all individuals: 426
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65620
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.8724254150543e-4
allele num: 16022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.03e1

BaseQRankSum
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SIO_000300: -2.924e0

DP
type: SiteQuality
SIO_000300: 1.721991e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 622
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 213
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variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.771213073538655e-4
allele num: 15910
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

FS
type: SiteQuality
SIO_000300: 2.277e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQRankSum
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DP
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QD
type: SiteQuality
SIO_000300: 1.246e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.65e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 223
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.549426712116517e-4
allele num: 6454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
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allele num: 872
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 1.085e1

MQRankSum
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DP
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MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

QD
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3525
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.362942224484602e-5
allele num: 15716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64222
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

DP
type: SiteQuality
SIO_000300: 1.678159e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-1

QD
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VQSLOD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 1.527e0

InbreedingCoeff
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SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeDepth
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variant carriers: 9

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.821493624772313e-4
allele num: 10980
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64038
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 59
allele frequency: 5.958392243991113e-3
allele num: 9902
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.89e-1

ClippingRankSum
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SIO_000300: 7.099999999999999e-2

MQRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
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SIO_000300: 2.89e-1

QD
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SIO_000300: 1.23e1

MQ
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SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.675062e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63318
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10816
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.572678157962439e-4
allele num: 15548
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

MQRankSum
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FS
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SIO_000300: 1.606e0

ReadPosRankSum
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QD
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DP
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InbreedingCoeff
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SIO_000300: -8.0e-4

ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele num: 8222
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South Asian
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

QD
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MQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

MQ
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: -1.2e-3

BaseQRankSum
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SIO_000300: 2.74e0

VQSLOD
type: SiteQuality
SIO_000300: -2.618e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.627816121890871e-5
allele num: 61432
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -1.2e-3

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -7.099999999999999e-2

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 2.3e-1

MQRankSum
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SIO_000300: -5.15e-1

VQSLOD
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DP
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SIO_000300: 1.581769e6

QD
type: SiteQuality
SIO_000300: 1.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.760873393203029e-5
allele num: 56790
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 14558
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

ClippingRankSum
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.237036374211445e-5
allele num: 44702
num of homozygotes: 0

European (Finnish)
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African
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South Asian
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Latino
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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DP
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FS
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2886
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Latino
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Other
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 1993
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.418037436188315e-4
allele num: 21156
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.182872013248167e-4
allele num: 8454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.645e0

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.0e1

DP
type: SiteQuality
SIO_000300: 7.62307e5

GenotypeQuality
all individuals: 8821
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 1781
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 2.77e0

DP
type: SiteQuality
SIO_000300: 7.89762e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 70

GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 9953
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5480
num of homozygotes: 0

East Asian
type: Population
allele count: 79
allele frequency: 2.237960339943343e-2
allele num: 3530
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21434
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.525252525252525e-3
allele num: 396
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.51773209848656e-4
allele num: 8854
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.019e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.65e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 8.03194e5

GenotypeDepth
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38
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variant carriers: 0

GenotypeDepth
all individuals: 9046
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variant carriers: 0

GenotypeQuality
all individuals: 433
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variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9648
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 922
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27428
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 189
bin: 7.25e1
variant carriers: 1

African
type: Population
allele count: 5
allele frequency: 1.180916391119509e-3
allele num: 4234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8872
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

VQSLOD
type: SiteQuality
SIO_000300: -1.999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.27e-1

DP
type: SiteQuality
SIO_000300: 7.99727e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

FS
type: SiteQuality
SIO_000300: 5.955e0

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 246
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variant carriers: 0

GenotypeQuality
all individuals: 238
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GenotypeQuality
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GenotypeQuality
all individuals: 420
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 100
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GenotypeQuality
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GenotypeQuality
all individuals: 10892
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GenotypeQuality
all individuals: 1886
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.04e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.050000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 5.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 7.96295e5

GenotypeDepth
all individuals: 56
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 191

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 161
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 247
bin: 7.75e1
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GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 7

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

African
type: Population
allele count: 199
allele frequency: 4.597966728280961e-2
allele num: 4328
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2910
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 3.112413035518125e-3
allele num: 5462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.696158542312388e-5
allele num: 21294
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 7.96794e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.65e-2

FS
type: SiteQuality
SIO_000300: 1.119e0

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

QD
type: SiteQuality
SIO_000300: 1.022e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 525
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 2.69e0

QD
type: SiteQuality
SIO_000300: 1.609e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.06e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

DP
type: SiteQuality
SIO_000300: 7.87721e5

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 204
bin: 5.75e1
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GenotypeQuality
all individuals: 173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5487
bin: 6.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.935834155972359e-5
allele num: 20260
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.909125620465827e-4
allele num: 5238
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 3.948667324777887e-3
allele num: 4052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2828
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

FS
type: SiteQuality
SIO_000300: 4.196e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.314e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 7.35461e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2870
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3084
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21649
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 3102
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 141
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variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.031991744066047e-4
allele num: 19380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2722
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: -1.811e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.97e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

FS
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 6.93698e5

QD
type: SiteQuality
SIO_000300: 1.07e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3141
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2193
bin: 1.75e1
variant carriers: 3

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
all individuals: 1960
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variant carriers: 92

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 151
bin: 9.25e1
variant carriers: 6

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2916
bin: 2.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2734
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.988071570576541e-4
allele num: 5030
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.506180871828237e-4
allele num: 3074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

South Asian
type: Population
allele count: 90
allele frequency: 1.079136690647482e-2
allele num: 8340
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.354e1

FS
type: SiteQuality
SIO_000300: 6.27e-1

DP
type: SiteQuality
SIO_000300: 6.89768e5

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 3339
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 2952
bin: 2.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.291565244999471e-5
allele num: 18898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3818
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.839945280437756e-4
allele num: 2924
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

QD
type: SiteQuality
SIO_000300: 1.405e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.821e0

MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

DP
type: SiteQuality
SIO_000300: 6.76414e5

GenotypeQuality
all individuals: 1997
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 156
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GenotypeQuality
all individuals: 2822
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GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 5201
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GenotypeQuality
all individuals: 2282
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GenotypeQuality
all individuals: 16457
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GenotypeQuality
all individuals: 219
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GenotypeQuality
all individuals: 711
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 661
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variant carriers: 0

GenotypeQuality
all individuals: 333
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GenotypeQuality
all individuals: 5348
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 134
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.646202699126753e-4
allele num: 7558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.1e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 3.811e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 6.58726e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.44e-2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.995004995004995e-4
allele num: 2002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3236
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.54e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

QD
type: SiteQuality
SIO_000300: 1.537e1

MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
SIO_000300: 8.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.245e0

DP
type: SiteQuality
SIO_000300: 8.0386e4

MQRankSum
type: SiteQuality
SIO_000300: -3.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.1e-2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 49
allele frequency: 1.306666666666667e-2
allele num: 3750
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

FS
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

DP
type: SiteQuality
SIO_000300: 9.2469e4

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.86e-2

GenotypeQuality
all individuals: 1267
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580228184949907e-5
allele num: 63282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15788
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.729414e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

VQSLOD
type: SiteQuality
SIO_000300: -6.766e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

FS
type: SiteQuality
SIO_000300: 9.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63368
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.339546088500064e-5
allele num: 15774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.740684e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.823e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.592e0

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.899936668777707e-4
allele num: 15790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63384
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.749409e6

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.419999999999999e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

GenotypeQuality
all individuals: 1315
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580278128950695e-5
allele num: 63280
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15754
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

DP
type: SiteQuality
SIO_000300: 1.759211e6

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.376e0

QD
type: SiteQuality
SIO_000300: 2.467e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1413
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.26426246088688e-4
allele num: 63278
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 8.164931618697694e-4
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 3.243685262584045e-2
allele num: 11006
num of homozygotes: 9

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 2.336448598130841e-3
allele num: 856
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

QD
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MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.01e-2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10996
num of homozygotes: 0

African
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allele frequency: 1.02124183006536e-4
allele num: 9792
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 854
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63308
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.766753e6

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.823e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6434
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European (Non-Finnish)
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allele frequency: 1.580128306418481e-5
allele num: 63286
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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MQ
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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FS
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ClippingRankSum
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VQSLOD
type: SiteQuality
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MQRankSum
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DP
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SIO_000300: 1.76699e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.48e-1

QD
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele frequency: 1.029866117404737e-4
allele num: 9710
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Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10948
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15672
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8456
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62896
num of homozygotes: 0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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SIO_000300: 5.25e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

DP
type: SiteQuality
SIO_000300: 1.760064e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10912
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.07641196013289e-4
allele num: 9632
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.601024655779699e-5
allele num: 62460
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 5.345e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

BaseQRankSum
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QD
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InbreedingCoeff
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.748306e6

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.23e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8328
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.635376463661935e-5
allele num: 61148
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10832
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.457445434586077e-5
allele num: 15486
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6336
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Other
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.883e1

DP
type: SiteQuality
SIO_000300: 1.696518e6

FS
type: SiteQuality
SIO_000300: 5.233e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.37e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.649294102124291e-5
allele num: 60632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.672468e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10708
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.672520488375983e-5
allele num: 59790
num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.600942e6

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.093613298337708e-4
allele num: 9144
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59300
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9148
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59056
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6234
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8094
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South Asian
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allele frequency: 6.575486586007364e-5
allele num: 15208
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ReadPosRankSum
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DP
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
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allele num: 818
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 6.17741536940944e-4
allele num: 8094
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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QD
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele frequency: 9.419743782969103e-5
allele num: 10616
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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Latino
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allele frequency: 9.489466691971911e-5
allele num: 10538
num of homozygotes: 0

FS
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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African
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Latino
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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FS
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DP
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MQ
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.0e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.136621959536258e-4
allele num: 8798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14984
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.063e0

DP
type: SiteQuality
SIO_000300: 1.460255e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.067e0

QD
type: SiteQuality
SIO_000300: 1.337e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

GenotypeQuality
all individuals: 118
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.508999999999999e-1

DP
type: SiteQuality
SIO_000300: 4.016472e6

FS
type: SiteQuality
SIO_000300: 2.33e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

QD
type: SiteQuality
SIO_000300: 1.503e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.667e0

GenotypeQuality
all individuals: 1841
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.018481e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

FS
type: SiteQuality
SIO_000300: 3.395e0

VQSLOD
type: SiteQuality
SIO_000300: 7.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.923e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

GenotypeQuality
all individuals: 3495
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.779999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.88e-1

DP
type: SiteQuality
SIO_000300: 4.020268e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

QD
type: SiteQuality
SIO_000300: 1.186e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 1.3317e1

GenotypeQuality
all individuals: 3494
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.99592277251469e-5
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.77e-1

DP
type: SiteQuality
SIO_000300: 4.023548e6

QD
type: SiteQuality
SIO_000300: 1.323e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.7e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 46
allele frequency: 4.422226494904826e-3
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.02e-2

DP
type: SiteQuality
SIO_000300: 4.026428e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.556e0

VQSLOD
type: SiteQuality
SIO_000300: 5.44e0

QD
type: SiteQuality
SIO_000300: 1.382e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.69e-1

GenotypeQuality
all individuals: 1837
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.780346820809249e-4
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

DP
type: SiteQuality
SIO_000300: 4.024236e6

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.187e0

QD
type: SiteQuality
SIO_000300: 1.6e1

GenotypeQuality
all individuals: 1836
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.024374e6

MQRankSum
type: SiteQuality
SIO_000300: -3.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.87e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

FS
type: SiteQuality
SIO_000300: 8.323e0

QD
type: SiteQuality
SIO_000300: 1.28e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.56e-1

GenotypeQuality
all individuals: 3603
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.024653e6

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.455e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.355e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.477e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.86e1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 1.263e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

DP
type: SiteQuality
SIO_000300: 4.02485e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.199e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.14e-1

FS
type: SiteQuality
SIO_000300: 1.843e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

African
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allele count: 5
allele frequency: 4.805843906189927e-4
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 1.875e0

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

DP
type: SiteQuality
SIO_000300: 4.02535e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.977e0

QD
type: SiteQuality
SIO_000300: 1.239e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.024994e6

QD
type: SiteQuality
SIO_000300: 9.99e0

MQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.302e0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-3

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 23
allele frequency: 3.446828917395996e-4
allele num: 66728
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 12
allele frequency: 1.386962552011096e-3
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
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European (Non-Finnish)
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QD
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FS
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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DP
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MQ
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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African
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allele frequency: 1.921968095329617e-4
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European (Non-Finnish)
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East Asian
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Latino
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MQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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QD
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DP
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BaseQRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

East Asian
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African
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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ReadPosRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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QD
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DP
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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African
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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BaseQRankSum
type: SiteQuality
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MQ
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ClippingRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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DP
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 12
allele frequency: 1.814333232537043e-3
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 2.591568762957844e-4
allele num: 11576
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South Asian
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allele frequency: 1.21153380179307e-4
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African
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European (Non-Finnish)
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allele count: 222
allele frequency: 3.326640093505559e-3
allele num: 66734
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Other
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allele frequency: 2.202643171806168e-3
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.53e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
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East Asian
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Other
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African
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South Asian
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

Latino
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allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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African
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South Asian
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FS
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ClippingRankSum
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QD
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VQSLOD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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allele count: 0
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European (Finnish)
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allele count: 0
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Latino
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Other
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African
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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FS
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MQ
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 3.846893633391037e-4
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Latino
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allele frequency: 4.552522460262613e-2
allele num: 11576
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European (Finnish)
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allele count: 394
allele frequency: 5.95706078016329e-2
allele num: 6614
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Other
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South Asian
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allele frequency: 1.938923897237034e-3
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European (Non-Finnish)
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allele count: 400
allele frequency: 5.995743022454057e-3
allele num: 66714
num of homozygotes: 6

East Asian
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allele frequency: 4.345815996301433e-2
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BaseQRankSum
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MQ
type: SiteQuality
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DP
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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FS
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QD
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VQSLOD
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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Latino
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African
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East Asian
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DP
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 1.512401693889897e-4
allele num: 6612
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Latino
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African
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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DP
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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East Asian
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South Asian
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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QD
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ClippingRankSum
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DP
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MQRankSum
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MQ
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