2-102483040-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483040
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483040
    reference: chr 2
allele count: 2
allele frequency: 1.663008048958957e-5
allele num: 120264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1521A>G
  hgvsp: ENST00000302217.5:c.1521A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1869A>G
  hgvsp: ENST00000350198.4:c.1869A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2028A>G
  hgvsp: ENST00000425019.1:c.2028A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1570A>G
  hgvsp: ENST00000421882.1:c.1570A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2121A>G
  hgvsp: ENST00000347699.4:c.2121A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.86A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1914A>G
  hgvsp: ENST00000417294.1:c.1914A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1518A>G
  hgvsp: ENST00000456652.1:c.1518A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2355A>G
  hgvsp: ENST00000324219.4:c.2355A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2040A>G
  hgvsp: ENST00000350878.4:c.2040A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1866A>G
  hgvsp: ENST00000413150.2:c.1866A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2121A>G
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

2-102483041-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483041
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483041
    reference: chr 2
allele count: 1
allele frequency: 8.316146630297385e-6
allele num: 120248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1867T>C
  hgvsp: ENSP00000389752.1:p.Ser623Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1870T>C
  hgvsp: ENSP00000281111.6:p.Ser624Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.87T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1519T>C
  hgvsp: ENSP00000387370.1:p.Ser507Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2041T>C
  hgvsp: ENSP00000343658.4:p.Ser681Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1522T>C
  hgvsp: ENSP00000303600.5:p.Ser508Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1571T>C
  hgvsp: ENSP00000396066.1:p.Ser525Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2122T>C
  hgvsp: ENSP00000314363.6:p.Ser708Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1915T>C
  hgvsp: ENSP00000409720.1:p.Ser639Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2356T>C
  hgvsp: ENSP00000313644.4:p.Ser786Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2029T>C
  hgvsp: ENSP00000392830.1:p.Ser677Pro
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser708Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

2-102483052-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483052
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483052
    reference: chr 2
allele count: 1
allele frequency: 8.336807002917883e-6
allele num: 119950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2041+11T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1867+11T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2029+11T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1870+11T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1571+11T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1915+11T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1519+11T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2122+11T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.87+11T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1522+11T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2356+11T>G
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-102483055-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483055
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483055
    reference: chr 2
allele count: 3
allele frequency: 2.501083802981292e-5
allele num: 119948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1522+14C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1915+14C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2122+14C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.87+14C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2041+14C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2356+14C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2029+14C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1870+14C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1519+14C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1867+14C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1571+14C>A
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

2-102483059-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483059
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483058
    reference: chr 2
allele count: 1
allele frequency: 8.341814177747376e-6
allele num: 119878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1870+20delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2029+20delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1571+20delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1867+20delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.87+20delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2356+20delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2122+20delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1915+20delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1522+20delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1519+20delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2041+20delC
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: TC
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

2-102483060-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483060
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483060
    reference: chr 2
allele count: 3
allele frequency: 2.503504906869618e-5
allele num: 119832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1867+19C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1571+19C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1522+19C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1519+19C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2041+19C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1915+19C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.87+19C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2122+19C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2356+19C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1870+19C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2029+19C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

2-102483062-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483062
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483062
    reference: chr 2
allele count: 2
allele frequency: 1.671067143477825e-5
allele num: 119684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2041+21T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1870+21T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1915+21T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1519+21T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1522+21T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.87+21T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2029+21T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2122+21T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2356+21T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1867+21T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1571+21T>C
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

2-102483063-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483063
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483063
    reference: chr 2
allele count: 2
allele frequency: 1.670871693762636e-5
allele num: 119698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1915+22T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2356+22T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1571+22T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2122+22T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1867+22T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1519+22T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1870+22T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.87+22T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2029+22T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1522+22T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2041+22T>G
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

2-102483068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483068
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483068
    reference: chr 2
allele count: 1
allele frequency: 8.356592515835743e-6
allele num: 119666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1519+27C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1522+27C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1867+27C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1571+27C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2122+27C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2029+27C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1915+27C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.87+27C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2356+27C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1870+27C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2041+27C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

2-102483091-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483091
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483090
    reference: chr 2
allele count: 12
allele frequency: 1.00825085281218e-4
allele num: 119018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1571+52delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2029+52delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2122+52delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.87+52delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1519+52delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1867+52delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1915+52delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2356+52delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1522+52delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1870+52delC
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2041+52delC
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15635
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8010
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23068
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: TC
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

2-102483641-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483641
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483641
    reference: chr 2
allele count: 1
allele frequency: 2.474879968321537e-5
allele num: 40406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1572-33G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1868-33G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2357-33G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1520-33G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1916-33G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.88-33G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2030-33G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2123-33G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1871-33G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1523-33G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2042-33G>A
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28473
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3867
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

2-102483649-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483649
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483649
    reference: chr 2
allele count: 1
allele frequency: 2.355379687205577e-5
allele num: 42456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2357-25A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.88-25A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1916-25A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1871-25A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1523-25A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1520-25A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2030-25A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2123-25A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1868-25A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2042-25A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1572-25A>G
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

2-102483656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483656
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483656
    reference: chr 2
allele count: 1
allele frequency: 2.263467632412856e-5
allele num: 44180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1916-18C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.88-18C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2042-18C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2030-18C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2357-18C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1871-18C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2123-18C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1523-18C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1868-18C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1572-18C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1520-18C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8063
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-102483658-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483658
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483658
    reference: chr 2
allele count: 1
allele frequency: 2.224793094242236e-5
allele num: 44948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1871-16C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1916-16C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1868-16C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1523-16C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1520-16C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1572-16C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.88-16C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2123-16C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2042-16C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2357-16C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2030-16C>A
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

2-102483661-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483661
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483661
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 46944
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1871-13T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1572-13T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2042-13T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2030-13T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1916-13T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2357-13T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.88-13T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2123-13T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1523-13T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1520-13T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1868-13T>C
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31740
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

2-102483669-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483669
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483669
    reference: chr 2
allele count: 1
allele frequency: 1.979100696643445e-5
allele num: 50528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1871-5A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2030-5A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2042-5A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2123-5A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.88-5A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1572-5A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1916-5A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1868-5A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1523-5A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2357-5A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1520-5A>G
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6308
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2123-5A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-102483679-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483679
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483679
    reference: chr 2
allele count: 2
allele frequency: 3.676470588235294e-5
allele num: 54400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1577T>C
  hgvsp: ENSP00000396066.1:p.Ser527Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1525T>C
  hgvsp: ENSP00000387370.1:p.Ser509Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1873T>C
  hgvsp: ENSP00000389752.1:p.Ser625Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1921T>C
  hgvsp: ENSP00000409720.1:p.Ser641Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1528T>C
  hgvsp: ENSP00000303600.5:p.Ser510Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2035T>C
  hgvsp: ENSP00000392830.1:p.Ser679Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1876T>C
  hgvsp: ENSP00000281111.6:p.Ser626Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2362T>C
  hgvsp: ENSP00000313644.4:p.Ser788Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2047T>C
  hgvsp: ENSP00000343658.4:p.Ser683Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2128T>C
  hgvsp: ENSP00000314363.6:p.Ser710Pro
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.93T>C
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser710Pro
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

2-102483685-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483685
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483685
    reference: chr 2
allele count: 1
allele frequency: 1.773175402510816e-5
allele num: 56396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1927T>G
  hgvsp: ENSP00000409720.1:p.Ser643Ala
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1882T>G
  hgvsp: ENSP00000281111.6:p.Ser628Ala
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1583T>G
  hgvsp: ENSP00000396066.1:p.Ser529Ala
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1534T>G
  hgvsp: ENSP00000303600.5:p.Ser512Ala
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2368T>G
  hgvsp: ENSP00000313644.4:p.Ser790Ala
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2134T>G
  hgvsp: ENSP00000314363.6:p.Ser712Ala
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2041T>G
  hgvsp: ENSP00000392830.1:p.Ser681Ala
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2053T>G
  hgvsp: ENSP00000343658.4:p.Ser685Ala
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.99T>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1531T>G
  hgvsp: ENSP00000387370.1:p.Ser511Ala
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1879T>G
  hgvsp: ENSP00000389752.1:p.Ser627Ala
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser712Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

2-102483690-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483690
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483690
    reference: chr 2
allele count: 1
allele frequency: 1.717032967032967e-5
allele num: 58240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2058A>G
  hgvsp: ENST00000350878.4:c.2058A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1932A>G
  hgvsp: ENST00000417294.1:c.1932A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1536A>G
  hgvsp: ENST00000456652.1:c.1536A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1539A>G
  hgvsp: ENST00000302217.5:c.1539A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1588A>G
  hgvsp: ENST00000421882.1:c.1588A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1884A>G
  hgvsp: ENST00000413150.2:c.1884A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2046A>G
  hgvsp: ENST00000425019.1:c.2046A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2373A>G
  hgvsp: ENST00000324219.4:c.2373A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2139A>G
  hgvsp: ENST00000347699.4:c.2139A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.104A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1887A>G
  hgvsp: ENST00000350198.4:c.1887A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu713Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

2-102483706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483706
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483706
    reference: chr 2
allele count: 5
allele frequency: 7.934492827218485e-5
allele num: 63016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1948C>T
  hgvsp: ENSP00000409720.1:p.Arg650Cys
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2062C>T
  hgvsp: ENSP00000392830.1:p.Arg688Cys
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1555C>T
  hgvsp: ENSP00000303600.5:p.Arg519Cys
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.120C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2389C>T
  hgvsp: ENSP00000313644.4:p.Arg797Cys
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1903C>T
  hgvsp: ENSP00000281111.6:p.Arg635Cys
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1552C>T
  hgvsp: ENSP00000387370.1:p.Arg518Cys
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2155C>T
  hgvsp: ENSP00000314363.6:p.Arg719Cys
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1604C>T
  hgvsp: ENSP00000396066.1:p.Arg536Cys
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1900C>T
  hgvsp: ENSP00000389752.1:p.Arg634Cys
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2074C>T
  hgvsp: ENSP00000343658.4:p.Arg692Cys
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14523
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg719Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

2-102483707-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483707
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483707
    reference: chr 2
allele count: 2
allele frequency: 3.144357450554979e-5
allele num: 63606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1901G>A
  hgvsp: ENSP00000389752.1:p.Arg634His
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1904G>A
  hgvsp: ENSP00000281111.6:p.Arg635His
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1553G>A
  hgvsp: ENSP00000387370.1:p.Arg518His
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2156G>A
  hgvsp: ENSP00000314363.6:p.Arg719His
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2390G>A
  hgvsp: ENSP00000313644.4:p.Arg797His
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2075G>A
  hgvsp: ENSP00000343658.4:p.Arg692His
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1556G>A
  hgvsp: ENSP00000303600.5:p.Arg519His
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2063G>A
  hgvsp: ENSP00000392830.1:p.Arg688His
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1949G>A
  hgvsp: ENSP00000409720.1:p.Arg650His
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1605G>A
  hgvsp: ENSP00000396066.1:p.Arg536His
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.121G>A
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg719His
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

2-102483720-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483720
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483720
    reference: chr 2
allele count: 1
allele frequency: 1.489780108455992e-5
allele num: 67124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1917A>G
  hgvsp: ENST00000350198.4:c.1917A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.134A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2088A>G
  hgvsp: ENST00000350878.4:c.2088A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1618A>G
  hgvsp: ENST00000421882.1:c.1618A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2403A>G
  hgvsp: ENST00000324219.4:c.2403A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1566A>G
  hgvsp: ENST00000456652.1:c.1566A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1962A>G
  hgvsp: ENST00000417294.1:c.1962A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2169A>G
  hgvsp: ENST00000347699.4:c.2169A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2076A>G
  hgvsp: ENST00000425019.1:c.2076A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1569A>G
  hgvsp: ENST00000302217.5:c.1569A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1914A>G
  hgvsp: ENST00000413150.2:c.1914A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25436
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala723Ala
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

2-102483721-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483721
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483721
    reference: chr 2
allele count: 1
allele frequency: 1.489247632096265e-5
allele num: 67148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2077G>C
  hgvsp: ENSP00000392830.1:p.Val693Leu
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1570G>C
  hgvsp: ENSP00000303600.5:p.Val524Leu
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2089G>C
  hgvsp: ENSP00000343658.4:p.Val697Leu
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1963G>C
  hgvsp: ENSP00000409720.1:p.Val655Leu
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2170G>C
  hgvsp: ENSP00000314363.6:p.Val724Leu
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1619G>C
  hgvsp: ENSP00000396066.1:p.Val541Leu
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1567G>C
  hgvsp: ENSP00000387370.1:p.Val523Leu
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2404G>C
  hgvsp: ENSP00000313644.4:p.Val802Leu
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.135G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1918G>C
  hgvsp: ENSP00000281111.6:p.Val640Leu
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1915G>C
  hgvsp: ENSP00000389752.1:p.Val639Leu
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val724Leu
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-102483723-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483723
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483723
    reference: chr 2
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1965G>A
  hgvsp: ENST00000417294.1:c.1965G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2172G>A
  hgvsp: ENST00000347699.4:c.2172G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1917G>A
  hgvsp: ENST00000413150.2:c.1917G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1621G>A
  hgvsp: ENST00000421882.1:c.1621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2406G>A
  hgvsp: ENST00000324219.4:c.2406G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2079G>A
  hgvsp: ENST00000425019.1:c.2079G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1569G>A
  hgvsp: ENST00000456652.1:c.1569G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1572G>A
  hgvsp: ENST00000302217.5:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2091G>A
  hgvsp: ENST00000350878.4:c.2091G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1920G>A
  hgvsp: ENST00000350198.4:c.1920G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.137G>A
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val724Val
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

2-102483730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483730
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483730
    reference: chr 2
allele count: 3
allele frequency: 4.434589800443459e-5
allele num: 67650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1927C>T
  hgvsp: ENSP00000281111.6:p.Pro643Ser
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2086C>T
  hgvsp: ENSP00000392830.1:p.Pro696Ser
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.144C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1924C>T
  hgvsp: ENSP00000389752.1:p.Pro642Ser
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1579C>T
  hgvsp: ENSP00000303600.5:p.Pro527Ser
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1576C>T
  hgvsp: ENSP00000387370.1:p.Pro526Ser
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1972C>T
  hgvsp: ENSP00000409720.1:p.Pro658Ser
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2098C>T
  hgvsp: ENSP00000343658.4:p.Pro700Ser
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2413C>T
  hgvsp: ENSP00000313644.4:p.Pro805Ser
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2179C>T
  hgvsp: ENSP00000314363.6:p.Pro727Ser
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1628C>T
  hgvsp: ENSP00000396066.1:p.Pro544Ser
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro727Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/2-102483757-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483757
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483757
    reference: chr 2
allele count: 1
allele frequency: 1.532332209623046e-5
allele num: 65260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1606C>A
  hgvsp: ENSP00000303600.5:p.Pro536Thr
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2113C>A
  hgvsp: ENSP00000392830.1:p.Pro705Thr
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1603C>A
  hgvsp: ENSP00000387370.1:p.Pro535Thr
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2206C>A
  hgvsp: ENSP00000314363.6:p.Pro736Thr
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1655C>A
  hgvsp: ENSP00000396066.1:p.Pro553Thr
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.171C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1951C>A
  hgvsp: ENSP00000389752.1:p.Pro651Thr
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2125C>A
  hgvsp: ENSP00000343658.4:p.Pro709Thr
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.1999C>A
  hgvsp: ENSP00000409720.1:p.Pro667Thr
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2440C>A
  hgvsp: ENSP00000313644.4:p.Pro814Thr
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1954C>A
  hgvsp: ENSP00000281111.6:p.Pro652Thr
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8999
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro736Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

2-102483786-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483786
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483786
    reference: chr 2
allele count: 1
allele frequency: 1.858321563963428e-5
allele num: 53812
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+15G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+6G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+15G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+6G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+15G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.200G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+6G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+15G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+15G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+6G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+15G>C
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1977+6G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

2-102483787-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483787
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483787
    reference: chr 2
allele count: 2
allele frequency: 3.757703291748084e-5
allele num: 53224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+7G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+16G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+7G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+16G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+16G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.201G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+16G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+16G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+7G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+7G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+16G>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1977+7G>T
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-102483797-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483797
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483797
    reference: chr 2
allele count: 1
allele frequency: 2.085070892410342e-5
allele num: 47960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+26A>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+26A>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+26A>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+26A>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+26A>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+17A>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+26A>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.211A>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+17A>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+17A>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+17A>C
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

2-102483798-CTTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483798
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483795
    reference: chr 2
allele count: 1
allele frequency: 2.111308166539988e-5
allele num: 47364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+30_1965+32delATT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+21_1629+23delATT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+21_2463+23delATT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+30_2220+32delATT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+30_2127+32delATT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+21_2148+23delATT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+21_1977+23delATT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.215_217delATT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+30_2013+32delATT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+30_1617+32delATT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+30_1669+32delATT
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22612
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5559
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: CTTA
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

2-102483799-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483799
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483799
    reference: chr 2
allele count: 1
allele frequency: 2.133834073062479e-5
allele num: 46864
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.213T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+19T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+28T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+28T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+28T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+19T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+19T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+28T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+19T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+28T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+28T>C
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13828
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

2-102483814-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483814
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483814
    reference: chr 2
allele count: 2
allele frequency: 5.555246930726071e-5
allele num: 36002
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+34A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+43A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.228A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+43A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+34A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+43A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+34A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+43A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+34A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+43A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+43A>G
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20979
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20022
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20154
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

2-102483818-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483818
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483818
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 33482
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+38G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+47G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+47G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.232G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+47G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+38G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+47G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+38G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+47G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+38G>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+47G>C
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20407
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

2-102483819-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483819
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483819
    reference: chr 2
allele count: 1
allele frequency: 3.018230109863576e-5
allele num: 33132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+48A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+39A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+39A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+48A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+39A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+39A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.233A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+48A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+48A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+48A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+48A>G
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

2-102483821-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483821
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483820
    reference: chr 2
allele count: 8
allele frequency: 2.49003984063745e-4
allele num: 32128
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.238delT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+53delT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+53delT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+53delT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+53delT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+44delT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+44delT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+53delT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+53delT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+44delT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+44delT
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21993
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20499
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10537
  bin: 2.25e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: CT
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

2-102483824-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102483824
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102483824
    reference: chr 2
allele count: 88
allele frequency: 2.802369275842303e-3
allele num: 31402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+53T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+44T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000477711
  gene symbol: MAP4K4
  hgvsc: ENST00000477711.1:n.238T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+53T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+44T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+53T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+53T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+44T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+53T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+44T>C
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+53T>C
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 1.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 20534
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22305
  bin: 7.5e0
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3951
  bin: 9.75e1
  variant carriers: 114
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS

2-102484441-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484441
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484441
    reference: chr 2
allele count: 2
allele frequency: 1.766004415011038e-5
allele num: 113250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+670C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+670C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+670C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+670C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+661C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+661C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.444C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+670C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+661C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.124C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+661C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+670C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12118
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16566
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

2-102484442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484442
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484442
    reference: chr 2
allele count: 1
allele frequency: 8.83376618787654e-6
allele num: 113202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+662C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+671C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+671C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+662C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+671C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+671C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+662C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+671C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.125C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.445C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+671C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+662C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

2-102484450-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484450
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484450
    reference: chr 2
allele count: 4
allele frequency: 3.538132220001061e-5
allele num: 113054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+670C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+679C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.133C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+679C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+679C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+670C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+679C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+679C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.453C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+670C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+679C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+670C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12177
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6419
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19220
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

2-102484451-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484451
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484451
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 112974
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+680G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.134G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+671G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+671G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+680G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+671G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.454G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+680G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+680G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+671G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+680G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+680G>A
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19799
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-102484459-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484459
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484459
    reference: chr 2
allele count: 6
allele frequency: 5.315190815350271e-5
allele num: 112884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.142C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+679C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+688C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+688C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+679C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+688C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+688C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+679C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.462C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+679C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+688C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+688C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21856
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

2-102484461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484461
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484461
    reference: chr 2
allele count: 2
allele frequency: 1.77679856434676e-5
allele num: 112562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+690C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+690C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+690C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+681C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+681C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.144C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.464C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+690C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+690C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+690C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+681C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+681C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

2-102484462-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484462
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484462
    reference: chr 2
allele count: 1
allele frequency: 8.880994671403197e-6
allele num: 112600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+682G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+682G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+682G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+691G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.465G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+691G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+682G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.145G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+691G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+691G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+691G>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+691G>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6181
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

2-102484463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484463
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484463
    reference: chr 2
allele count: 1
allele frequency: 8.879575201122378e-6
allele num: 112618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+692G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+683G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+692G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.146G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+683G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+692G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.466G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+683G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+692G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+683G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+692G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+692G>A
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

2-102484470-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484470
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484470
    reference: chr 2
allele count: 7
allele frequency: 6.247768654052124e-5
allele num: 112040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+699C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.153C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+699C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.473C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+690C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+690C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+690C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+690C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+699C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+699C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+699C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+699C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22335
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12878
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

2-102484471-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484471
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484471
    reference: chr 2
allele count: 1
allele frequency: 8.922039221284417e-6
allele num: 112082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.154G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+700G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+691G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+691G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+700G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.474G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+700G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+700G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+700G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+700G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+691G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+691G>A
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

2-102484472-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484472
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484472
    reference: chr 2
allele count: 12
allele frequency: 1.070510990579503e-4
allele num: 112096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.155A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+692A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+692A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+701A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+701A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+692A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+701A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+701A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+701A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.475A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+692A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+701A>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22745
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12971
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

2-102484473-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484473
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484473
    reference: chr 2
allele count: 1
allele frequency: 8.932399599828497e-6
allele num: 111952
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+693A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+693A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+702A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.156A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+702A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+702A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+702A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+693A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+702A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+702A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+693A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.476A>G
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

2-102484473-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484473
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484473
    reference: chr 2
allele count: 2
allele frequency: 1.786479919965699e-5
allele num: 111952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.156A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+702A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+702A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+693A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+693A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+702A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+693A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+702A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.476A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+702A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+693A>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+702A>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-102484478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484478
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484478
    reference: chr 2
allele count: 3
allele frequency: 2.697114087925919e-5
allele num: 111230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+698C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+707C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+707C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+698C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+698C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+707C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.161C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+707C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.481C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+707C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+698C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+707C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13069
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21932
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-102484479-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484479
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484479
    reference: chr 2
allele count: 2
allele frequency: 1.800018000180002e-5
allele num: 111110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+708G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+708G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+699G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+699G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.162G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+708G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.482G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+699G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+699G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+708G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+708G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+708G>A
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13091
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

2-102484484-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484484
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484484
    reference: chr 2
allele count: 1
allele frequency: 9.084797499863727e-6
allele num: 110074
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.167A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+713A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+713A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.487A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+704A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+713A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+704A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+704A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+704A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+713A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+713A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+713A>G
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ

2-102484492-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484492
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484492
    reference: chr 2
allele count: 1
allele frequency: 9.240948490953111e-6
allele num: 108214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.175G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+721G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+712G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+712G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+721G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+721G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.495G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+721G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+712G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+712G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+721G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+721G>A
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-102484493-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484493
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484493
    reference: chr 2
allele count: 2
allele frequency: 1.853327649795207e-5
allele num: 107914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.496C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+722C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+713C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+722C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+722C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+713C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+713C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.176C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+713C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+722C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+722C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+722C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10976
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11648
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

2-102484494-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484494
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484494
    reference: chr 2
allele count: 1
allele frequency: 9.296445039416927e-6
allele num: 107568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+723G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+723G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+723G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+714G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+714G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.497G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.177G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+714G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+723G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+723G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+714G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+723G>A
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-102484496-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484496
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484496
    reference: chr 2
allele count: 1
allele frequency: 9.310293460449874e-6
allele num: 107408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+716A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+716A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.499A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+716A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+725A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.179A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+725A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+725A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+716A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+725A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+725A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+725A>G
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16336
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-102484505-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484505
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484505
    reference: chr 2
allele count: 1
allele frequency: 9.463423866754993e-6
allele num: 105670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+725C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+725C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+734C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+734C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+734C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+725C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+725C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.182+6C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.502+6C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+734C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+734C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+734C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14591
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.182+6C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

2-102484506-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484506
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484506
    reference: chr 2
allele count: 3
allele frequency: 2.849652342414226e-5
allele num: 105276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+735G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.502+7G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+735G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+726G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+726G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+735G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+735G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+726G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.182+7G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+726G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+735G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+735G>A
  variant of: http://identifiers.org/hgnc/6866
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14024
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.182+7G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

2-102484516-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484516
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484516
    reference: chr 2
allele count: 11
allele frequency: 1.056798093920529e-4
allele num: 104088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+745A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.502+17A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.182+17A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+736A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+745A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+745A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+736A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+745A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+745A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+745A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+736A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+736A>G
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4897
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10755
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-102484533-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484533
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484533
    reference: chr 2
allele count: 1
allele frequency: 1.009693053311793e-5
allele num: 99040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+762G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+762G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+762G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+762G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+753G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+753G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+753G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+762G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+753G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+762G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.502+34G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.182+34G>A
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11534
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum

2-102484541-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484541
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484541
    reference: chr 2
allele count: 1
allele frequency: 1.041948861149895e-5
allele num: 95974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+770C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+761C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+761C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+761C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+770C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+770C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.502+42C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+770C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+761C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+770C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+770C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.182+42C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19722
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/2-102484542-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484542
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484542
    reference: chr 2
allele count: 2
allele frequency: 2.098063487401129e-5
allele num: 95326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+771C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+771C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.182+43C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+771C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+762C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+771C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+762C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+762C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+771C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+762C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+771C>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.502+43C>A
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

2-102484542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484542
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484542
    reference: chr 2
allele count: 2
allele frequency: 2.098063487401129e-5
allele num: 95326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+771C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.502+43C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+762C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+762C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.182+43C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+762C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+771C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+771C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+771C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+771C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+771C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+762C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

2-102484543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484543
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484543
    reference: chr 2
allele count: 2
allele frequency: 2.100046201016423e-5
allele num: 95236
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+772G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+763G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+772G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+772G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+763G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+772G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+772G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.502+44G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.182+44G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+772G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+763G>A
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+763G>A
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12078
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10534
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

2-102484546-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102484546
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102484546
    reference: chr 2
allele count: 1
allele frequency: 1.024296308436104e-5
allele num: 97628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1669+775C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2013+775C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2148+766C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1629+766C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1977+766C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1617+775C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1965+775C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.182+47C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.502+47C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2220+775C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2127+775C>T
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2463+766C>T
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

2-102486053-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102486053
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102486054
    reference: chr 2
allele count: 1
allele frequency: 1.642899388841427e-5
allele num: 60868
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1978-29dupT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2464-29dupT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2221-29dupT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2014-29dupT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1630-29dupT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.183-29dupT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1966-29dupT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2149-29dupT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2128-29dupT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.503-29dupT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1618-29dupT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1670-29dupT
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

2-102486056-A-ACT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102486056
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102486058
    reference: chr 2
allele count: 1
allele frequency: 1.626545217957059e-5
allele num: 61480
alternate allele: ACT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1670-21_1670-20dupCT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000392830
  ensembl transcript: ENST00000425019
  gene symbol: MAP4K4
  hgvsc: ENST00000425019.1:c.2128-21_2128-20dupCT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1966-21_1966-20dupCT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1630-21_1630-20dupCT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.503-21_503-20dupCT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000313644
  ensembl transcript: ENST00000324219
  gene symbol: MAP4K4
  hgvsc: ENST00000324219.4:c.2464-21_2464-20dupCT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1978-21_1978-20dupCT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2221-21_2221-20dupCT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2014-21_2014-20dupCT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1618-21_1618-20dupCT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2149-21_2149-20dupCT
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000491743
  gene symbol: MAP4K4
  hgvsc: ENST00000491743.1:n.183-21_183-20dupCT
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

2-102486056-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102486056
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 102486056
    reference: chr 2
allele count: 1
allele frequency: 1.626545217957059e-5
allele num: 61480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000303600
  ensembl transcript: ENST00000302217
  gene symbol: MAP4K4
  hgvsc: ENST00000302217.5:c.1630-28A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000281111
  ensembl transcript: ENST00000350198
  gene symbol: MAP4K4
  hgvsc: ENST00000350198.4:c.1978-28A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000387370
  ensembl transcript: ENST00000456652
  gene symbol: MAP4K4
  hgvsc: ENST00000456652.1:c.1618-28A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl transcript: ENST00000498066
  gene symbol: MAP4K4
  hgvsc: ENST00000498066.1:n.503-28A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000409720
  ensembl transcript: ENST00000417294
  gene symbol: MAP4K4
  hgvsc: ENST00000417294.1:c.2014-28A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000396066
  ensembl transcript: ENST00000421882
  gene symbol: MAP4K4
  hgvsc: ENST00000421882.1:c.1670-28A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000343658
  ensembl transcript: ENST00000350878
  gene symbol: MAP4K4
  hgvsc: ENST00000350878.4:c.2149-28A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000389752
  ensembl transcript: ENST00000413150
  gene symbol: MAP4K4
  hgvsc: ENST00000413150.2:c.1966-28A>G
  variant of: http://identifiers.org/hgnc/6866
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000071054
  ensembl protein: ENSP00000314363
  ensembl transcript: ENST00000347699
  gene symbol: MAP4K4
  hgvsc: ENST00000347699.4:c.2221-28A>G
  variant of: http://identifiers.org/hgnc/6866
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
num of homozygotes: 0
reference allele: A

GenotypeDepth
all individuals: 344
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 841
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 205
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5937
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3621
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4728
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504981488727689e-5
allele num: 66446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.181e1

VQSLOD
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

MQRankSum
type: SiteQuality
SIO_000300: 8.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

FS
type: SiteQuality
SIO_000300: 5.517e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.61e-1

DP
type: SiteQuality
SIO_000300: 1.672085e6

GenotypeDepth
all individuals: 543
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 841
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4730
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8310
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3277
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30228
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5936
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3620
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505208019748329e-5
allele num: 66436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.175e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.57e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

FS
type: SiteQuality
SIO_000300: 3.48e0

DP
type: SiteQuality
SIO_000300: 1.671474e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e-1

GenotypeQuality
all individuals: 276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28979
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3600
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8170
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5937
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4705
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026061974143238e-4
allele num: 9746
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.85e0

VQSLOD
type: SiteQuality
SIO_000300: -8.453000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.660309e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29155
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5939
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.523931598154236e-5
allele num: 66314
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.288e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 1.298e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

FS
type: SiteQuality
SIO_000300: 1.1382e1

MQRankSum
type: SiteQuality
SIO_000300: -7.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.660118e6

VQSLOD
type: SiteQuality
SIO_000300: -1.556e0

GenotypeQuality
all individuals: 8141
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5937
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 407
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4710
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28719
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.161429451632779e-5
allele num: 16230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66268
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

MQ
type: SiteQuality
SIO_000300: 6.014e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

QD
type: SiteQuality
SIO_000300: 1.151e1

FS
type: SiteQuality
SIO_000300: 1.469e0

DP
type: SiteQuality
SIO_000300: 1.655617e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.53e-1

GenotypeQuality
all individuals: 1740
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4700
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variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.16827041697508e-5
allele num: 16212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018867924528302e-5
allele num: 66250
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.652988e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.079e0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

QD
type: SiteQuality
SIO_000300: 9.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.136e-1

FS
type: SiteQuality
SIO_000300: 1.713e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.181e0

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510984859931704e-5
allele num: 66182
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.169e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

QD
type: SiteQuality
SIO_000300: 1.405e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 2.432e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

DP
type: SiteQuality
SIO_000300: 1.653041e6

GenotypeQuality
all individuals: 27712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5938
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1740
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73370319001387e-4
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.650143e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.325e1

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e0

VQSLOD
type: SiteQuality
SIO_000300: -6.127e-1

FS
type: SiteQuality
SIO_000300: 1.577e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 1740
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5936
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 135
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GenotypeQuality
all individuals: 27479
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.566e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.44e-1

QD
type: SiteQuality
SIO_000300: 9.44e0

MQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

DP
type: SiteQuality
SIO_000300: 1.643788e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.88e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517773123273533e-5
allele num: 65886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.936561987640308e-4
allele num: 15858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.039e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.712979545668772e-5
allele num: 21218
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.52149e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.86e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.45275625612254e-5
allele num: 22458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.16e0

BaseQRankSum
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SIO_000300: -1.791e0

ReadPosRankSum
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SIO_000300: -1.656e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

DP
type: SiteQuality
SIO_000300: 8.91842e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 235
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 4.257130693912303e-5
allele num: 23490
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.2e-2

ClippingRankSum
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DP
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FS
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.171533455698315e-5
allele num: 23972
num of homozygotes: 0

Latino
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

VQSLOD
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FS
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ReadPosRankSum
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DP
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QD
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MQ
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InbreedingCoeff
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SIO_000300: -1.21e-2

MQRankSum
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BaseQRankSum
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SIO_000300: -2.262e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 25118
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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MQRankSum
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SIO_000300: -1.159e0

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 27144
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 1.102535832414554e-4
allele num: 9070
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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BaseQRankSum
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SIO_000300: -3.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.400666530640005e-5
allele num: 29406
num of homozygotes: 0

European (Finnish)
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East Asian
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allele num: 3632
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.664e0

ReadPosRankSum
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MQ
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QD
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VQSLOD
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DP
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele num: 5172
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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Latino
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South Asian
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allele num: 9450
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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DP
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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QD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.012145748987854e-4
allele num: 9880
num of homozygotes: 0

East Asian
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allele frequency: 2.275830678197542e-4
allele num: 4394
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 5.802146794313896e-5
allele num: 34470
num of homozygotes: 0

Latino
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African
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allele num: 5682
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Other
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

FS
type: SiteQuality
SIO_000300: 2.669e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

DP
type: SiteQuality
SIO_000300: 1.092564e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 209
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 827
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4380
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.743983257760725e-4
allele num: 5734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.872572676088705e-5
allele num: 34812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

FS
type: SiteQuality
SIO_000300: 2.505e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

QD
type: SiteQuality
SIO_000300: 7.2e0

DP
type: SiteQuality
SIO_000300: 1.097097e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.682e-1

GenotypeDepth
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.75e1
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GenotypeQuality
all individuals: 3869
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 747
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27896
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36956
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.818181818181818e-3
allele num: 550
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.125188e6

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

FS
type: SiteQuality
SIO_000300: 2.158e0

QD
type: SiteQuality
SIO_000300: 1.331e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

GenotypeDepth
all individuals: 6179
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17631
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
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variant carriers: 0

GenotypeQuality
all individuals: 1346
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variant carriers: 0

GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 619
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variant carriers: 0

GenotypeQuality
all individuals: 425
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variant carriers: 0

GenotypeQuality
all individuals: 745
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variant carriers: 0

GenotypeQuality
all individuals: 283
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variant carriers: 0

GenotypeQuality
all individuals: 27916
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1303
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
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variant carriers: 0

GenotypeQuality
all individuals: 185
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GenotypeQuality
all individuals: 361
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.704310671209909e-5
allele num: 36978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.337e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

DP
type: SiteQuality
SIO_000300: 1.125967e6

FS
type: SiteQuality
SIO_000300: 2.765e0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-1

QD
type: SiteQuality
SIO_000300: 2.45e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeDepth
all individuals: 15438
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27621
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variant carriers: 0

GenotypeQuality
all individuals: 1368
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GenotypeQuality
all individuals: 1481
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variant carriers: 0

GenotypeQuality
all individuals: 870
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variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 514
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variant carriers: 0

GenotypeQuality
all individuals: 1314
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15777
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variant carriers: 0

GenotypeQuality
all individuals: 846
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variant carriers: 0

GenotypeQuality
all individuals: 356
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GenotypeQuality
all individuals: 1063
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variant carriers: 0

GenotypeQuality
all individuals: 282
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variant carriers: 0

GenotypeQuality
all individuals: 358
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GenotypeQuality
all individuals: 1492
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variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 854
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
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variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5946
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.844457570387872e-5
allele num: 10158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.946e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

QD
type: SiteQuality
SIO_000300: 4.46e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

DP
type: SiteQuality
SIO_000300: 1.122994e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.53e-1

GenotypeDepth
all individuals: 1087
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
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variant carriers: 0

GenotypeQuality
all individuals: 726
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variant carriers: 0

GenotypeQuality
all individuals: 1337
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variant carriers: 0

GenotypeQuality
all individuals: 1417
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variant carriers: 0

GenotypeQuality
all individuals: 282
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variant carriers: 0

GenotypeQuality
all individuals: 403
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3871
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 357
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.9296875e-4
allele num: 10240
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.125882e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.632e0

QD
type: SiteQuality
SIO_000300: 1.081e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 4.757e0

VQSLOD
type: SiteQuality
SIO_000300: 9.54e-1

GenotypeDepth
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 135
bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 553
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14749
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.222222222222222e-4
allele num: 4500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

DP
type: SiteQuality
SIO_000300: 1.081292e6

QD
type: SiteQuality
SIO_000300: 1.054e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 129
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8232
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GenotypeQuality
all individuals: 1402
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
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GenotypeQuality
all individuals: 267
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GenotypeQuality
all individuals: 102
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GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.455902681780481e-5
allele num: 28936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3328
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

QD
type: SiteQuality
SIO_000300: 1.027e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.69e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.501e0

DP
type: SiteQuality
SIO_000300: 9.37175e5

VQSLOD
type: SiteQuality
SIO_000300: -3.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

GenotypeQuality
all individuals: 305
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variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.981777560566921e-5
allele num: 28646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3196
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

VQSLOD
type: SiteQuality
SIO_000300: 6.29e-1

ClippingRankSum
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SIO_000300: 1.7e-1

BaseQRankSum
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SIO_000300: -2.822e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

FS
type: SiteQuality
SIO_000300: 2.117e0

DP
type: SiteQuality
SIO_000300: 9.30412e5

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.18e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.939799858167205e-5
allele num: 25382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.459e1

MQ
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SIO_000300: 5.682e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.31e-1

DP
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SIO_000300: 8.72685e5

FS
type: SiteQuality
SIO_000300: 8.195e0

VQSLOD
type: SiteQuality
SIO_000300: -7.174e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2508
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.130198915009042e-4
allele num: 8848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3054
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

DP
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SIO_000300: 8.65094e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.57e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

MQ
type: SiteQuality
SIO_000300: 5.805e1

QD
type: SiteQuality
SIO_000300: 1.489e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24656
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.061738424045491e-4
allele num: 2462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -2.367e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

DP
type: SiteQuality
SIO_000300: 8.59502e5

QD
type: SiteQuality
SIO_000300: 2.256e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.708559046587215e-4
allele num: 3692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1350
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.23395853899309e-4
allele num: 8104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2514
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.692e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

QD
type: SiteQuality
SIO_000300: 1.447e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.66e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

DP
type: SiteQuality
SIO_000300: 7.66927e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

InbreedingCoeff
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SIO_000300: -3.88e-2

DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.519e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.150061500615006e-5
allele num: 16260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.43953e5

QD
type: SiteQuality
SIO_000300: 1.105e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.118e0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.132e0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.92e-2

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.316e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 8

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 8.517887563884157e-4
allele num: 2348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 3.833865814696486e-4
allele num: 15650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7858
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.07e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.39082e5

QD
type: SiteQuality
SIO_000300: 1.369e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 9325
bin: 2.25e1
variant carriers: 14

GenotypeQuality
all individuals: 6299
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 216
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 539
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 19529
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 361
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1387
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 539
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7382
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1860
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1613
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2778
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1219
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 12

GenotypeQuality
all individuals: 250
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 19

African
type: Population
allele count: 7
allele frequency: 2.12636695018226e-3
allele num: 3292
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.314060446780552e-3
allele num: 1522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 22
allele frequency: 9.458297506448839e-3
allele num: 2326
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.030927835051546e-3
allele num: 970
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 6.622516556291391e-3
allele num: 302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 54
allele frequency: 3.564827039873251e-3
allele num: 15148
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.549e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 7.35178e5

VQSLOD
type: SiteQuality
SIO_000300: 5.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5525
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7080
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1535
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 2009
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
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variant carriers: 0

GenotypeQuality
all individuals: 492
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variant carriers: 0

GenotypeQuality
all individuals: 924
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variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3298
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4454
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1672
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21889
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.299241174529858e-4
allele num: 6062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15008
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e-1

QD
type: SiteQuality
SIO_000300: 1.003e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 1.598095e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

FS
type: SiteQuality
SIO_000300: 1.141e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.018e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeDepth
all individuals: 664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5565
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3296
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4415
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22444
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1514
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7074
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583882412569691e-5
allele num: 63136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14990
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.597896e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 6.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.568e0

FS
type: SiteQuality
SIO_000300: 2.738e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.059e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

GenotypeDepth
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5899
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4302
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
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variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7062
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2688
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26186
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.757675716823141e-5
allele num: 63056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9016
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.669334400426837e-5
allele num: 14994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.889e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

QD
type: SiteQuality
SIO_000300: 9.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.568e0

FS
type: SiteQuality
SIO_000300: 6.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.41e-1

DP
type: SiteQuality
SIO_000300: 1.604638e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

GenotypeDepth
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7051
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27186
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5953
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14976
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10834
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 2.823e0

QD
type: SiteQuality
SIO_000300: 1.311e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.607817e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.24e-1

GenotypeDepth
all individuals: 325
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
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variant carriers: 0

GenotypeQuality
all individuals: 481
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variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7054
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 29702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
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variant carriers: 0

GenotypeQuality
all individuals: 6191
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.354047528275512e-5
allele num: 62952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.320053120849933e-4
allele num: 6024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

FS
type: SiteQuality
SIO_000300: 1.986e0

DP
type: SiteQuality
SIO_000300: 1.616327e6

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.187e1

GenotypeDepth
all individuals: 510
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
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variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
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variant carriers: 0

GenotypeQuality
all individuals: 919
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GenotypeQuality
all individuals: 6312
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variant carriers: 0

GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 1537
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7047
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variant carriers: 2

GenotypeQuality
all individuals: 435
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variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29511
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4190
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.185930929017459e-5
allele num: 62776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.445e-1

QD
type: SiteQuality
SIO_000300: 1.018e1

FS
type: SiteQuality
SIO_000300: 2.321e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.21e-1

DP
type: SiteQuality
SIO_000300: 1.618145e6

MQ
type: SiteQuality
SIO_000300: 5.87e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 288
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
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variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.59230597751664e-5
allele num: 62802
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

BaseQRankSum
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SIO_000300: -1.106e0

FS
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 4.1e0

VQSLOD
type: SiteQuality
SIO_000300: -6.608000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 1.619918e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 677
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1420
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GenotypeQuality
all individuals: 1257
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.247272054743851e-5
allele num: 10814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62824
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.94e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.272e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 1.496e0

BaseQRankSum
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SIO_000300: -3.746e0

QD
type: SiteQuality
SIO_000300: 1.09e1

DP
type: SiteQuality
SIO_000300: 1.619472e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 854
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 621
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variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.738544474393532e-5
allele num: 14840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5958
num of homozygotes: 0

African
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allele count: 6
allele frequency: 6.712911165808906e-4
allele num: 8938
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.317e-1

DP
type: SiteQuality
SIO_000300: 1.621342e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 9.361000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 2.239e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1138
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variant carriers: 0

GenotypeQuality
all individuals: 640
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.600051201638452e-5
allele num: 62498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.126e0

QD
type: SiteQuality
SIO_000300: 1.238e1

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 1.283e1

VQSLOD
type: SiteQuality
SIO_000300: -2.382e0

DP
type: SiteQuality
SIO_000300: 1.624358e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeDepth
all individuals: 953
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variant carriers: 0

GenotypeQuality
all individuals: 1828
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7052
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 645
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.340482573726542e-3
allele num: 8206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14852
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.266123054114158e-5
allele num: 10792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 2.515e0

DP
type: SiteQuality
SIO_000300: 1.622878e6

ClippingRankSum
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7115
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.601845325815339e-5
allele num: 62428
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10778
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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SIO_000300: -3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.68e-1

DP
type: SiteQuality
SIO_000300: 1.621498e6

GenotypeDepth
all individuals: 154
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 31795
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.203690651630679e-5
allele num: 62428
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

DP
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FS
type: SiteQuality
SIO_000300: 8.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.68e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5880
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.833564270292914e-5
allele num: 62066
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -1.256e0

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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SIO_000300: 2.353e0

DP
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ReadPosRankSum
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SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 5.92e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10718
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8844
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.227888960619755e-5
allele num: 61960
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14720
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.17e0

ReadPosRankSum
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SIO_000300: 9.330000000000001e-1

VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.92e1

QD
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SIO_000300: 1.475e1

MQRankSum
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SIO_000300: 3.11e-1

ClippingRankSum
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SIO_000300: -1.1e-1

DP
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SIO_000300: 1.615062e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 1
allele frequency: 6.846501437765302e-5
allele num: 14606
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61396
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8066
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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VQSLOD
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FS
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SIO_000300: 2.202e0

BaseQRankSum
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SIO_000300: 2.46e0

MQ
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SIO_000300: 5.983e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60344
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10470
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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MQRankSum
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SIO_000300: -8.63e-1

ClippingRankSum
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FS
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MQ
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QD
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DP
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 1.5e-3

BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.325684259536399e-5
allele num: 60138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10454
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.668223675430402e-5
allele num: 59944
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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African
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South Asian
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QD
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FS
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10420
num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Other
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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FS
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QD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 1.18427285646613e-4
allele num: 8444
num of homozygotes: 0

Other
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East Asian
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BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

African
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allele frequency: 2.374732842555213e-4
allele num: 8422
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.705611461709023e-5
allele num: 58630
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 1.086741750642166e-3
allele num: 10122
num of homozygotes: 0

African
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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DP
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QD
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -3.12e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.34517083669626e-4
allele num: 7434
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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MQRankSum
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SIO_000300: -5.38e-1

ClippingRankSum
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SIO_000300: 9.419999999999999e-1

InbreedingCoeff
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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FS
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13460
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
type: Population
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East Asian
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allele count: 1
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allele num: 7266
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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MQ
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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QD
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 52694
num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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Other
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South Asian
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DP
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QD
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 1.069976460517869e-4
allele num: 9346
num of homozygotes: 0

African
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allele num: 7520
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South Asian
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allele frequency: 0.0e0
allele num: 13384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.507e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

FS
type: SiteQuality
SIO_000300: 1.332e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

DP
type: SiteQuality
SIO_000300: 1.232518e6

GenotypeDepth
all individuals: 792
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13600
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3173
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5748
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2718
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7375
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 419
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6086
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8383
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.282380097460887e-4
allele num: 7798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7148
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.26e-1

DP
type: SiteQuality
SIO_000300: 1.264957e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.61e-1

FS
type: SiteQuality
SIO_000300: 4.043e0

MQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.131e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.6e-2

GenotypeDepth
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4410
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25068
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5514
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2984
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10914
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.046736944732192e-5
allele num: 32822
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

QD
type: SiteQuality
SIO_000300: 1.214e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

DP
type: SiteQuality
SIO_000300: 7.84829e5

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

GenotypeDepth
all individuals: 39
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2327
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1083
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26091
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4040
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.365184484389782e-4
allele num: 4228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33210
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.521e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

FS
type: SiteQuality
SIO_000300: 2.077e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 8.00731e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0