3-147106633-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106633
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106633
    reference: chr 3
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*13T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.752T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*13T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.395T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.506T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.704T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*13T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1665T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*13T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.638T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*13T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2017T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*13T>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10353
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

3-147106637-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106637
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106637
    reference: chr 3
allele count: 1
allele frequency: 8.288575028181154e-6
allele num: 120648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.391G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.502G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.700G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2013G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.748G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1661G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.634G>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

3-147106642-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106642
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106642
    reference: chr 3
allele count: 1
allele frequency: 8.288712431410904e-6
allele num: 120646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1656C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*4C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*4C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*4C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*4C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.629C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.695C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*4C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2008C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.497C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*4C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.743C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.386C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

3-147106649-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106649
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106650
    reference: chr 3
allele count: 3
allele frequency: 2.486531288852051e-5
allele num: 120650
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-4dupA
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-4dupA
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-4dupA
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-4dupA
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-4dupA
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-4dupA
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-4dupA
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-4dupA
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-4dupA
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-4dupA
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-4dupA
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-4dupA
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-4dupA
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*-4dupA
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-147106650-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106650
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106650
    reference: chr 3
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-4A>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-4A>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-4A>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-4A>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-4A>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-4A>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-4A>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-4A>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-4A>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-4A>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-4A>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-4A>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-4A>G
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*-4A>G
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

3-147106653-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106653
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106653
    reference: chr 3
allele count: 1
allele frequency: 8.288437629506838e-6
allele num: 120650
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-7G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-7G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-7G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-7G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-7G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-7G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-7G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-7G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-7G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-7G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-7G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-7G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-7G>C
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.*-7G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

3-147106655-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106655
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106655
    reference: chr 3
allele count: 1
allele frequency: 8.288849839196314e-6
allele num: 120644
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-9T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-9T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-9T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-9T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-9T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-9T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-9T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-9T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-9T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-9T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-9T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-9T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-9T>C
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

3-147106661-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106661
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106661
    reference: chr 3
allele count: 32
allele frequency: 2.65243194854282e-4
allele num: 120644
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-15A>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-15A>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-15A>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-15A>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-15A>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-15A>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-15A>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-15A>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-15A>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-15A>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-15A>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-15A>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-15A>C
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12649
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10527
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

3-147106662-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106662
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106662
    reference: chr 3
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-16C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-147106662-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106662
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106661
    reference: chr 3
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-17delT
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-17delT
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-17delT
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-17delT
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-17delT
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-17delT
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-17delT
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-17delT
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-17delT
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-17delT
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-17delT
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-17delT
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-17delT
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: GA
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-147106671-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106671
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106671
    reference: chr 3
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-25T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-25T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-25T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-25T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-25T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-25T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-25T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-25T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-25T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-25T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-25T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-25T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-25T>C
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

3-147106673-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106673
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106673
    reference: chr 3
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-27C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-27C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-27C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-27C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-27C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-27C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-27C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-27C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-27C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-27C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-27C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-27C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-27C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10335
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12554
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

3-147106676-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106676
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106676
    reference: chr 3
allele count: 7
allele frequency: 5.802579661129348e-5
allele num: 120636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-30C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-30C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-30C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-30C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-30C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-30C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-30C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-30C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-30C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-30C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-30C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-30C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-30C>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12522
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

3-147106677-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106677
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106677
    reference: chr 3
allele count: 11
allele frequency: 9.118188298877634e-5
allele num: 120638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-31T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-31T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-31T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-31T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-31T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-31T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-31T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-31T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-31T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-31T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-31T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-31T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-31T>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10295
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-147106686-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106686
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106686
    reference: chr 3
allele count: 2
allele frequency: 1.6583472910897e-5
allele num: 120602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-40G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-40G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-40G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-40G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-40G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-40G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-40G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-40G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-40G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-40G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-40G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-40G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-40G>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

3-147106687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106687
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106687
    reference: chr 3
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-41C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-41C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-41C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-41C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-41C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-41C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-41C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-41C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-41C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-41C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-41C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-41C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-41C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9458
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12010
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-147106695-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147106695
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147106695
    reference: chr 3
allele count: 1
allele frequency: 8.302337938363443e-6
allele num: 120448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.*-49T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.*-49T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.691-49T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2004-49T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.*-49T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.739-49T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.*-49T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1652-49T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.*-49T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.*-49T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000480015
  gene symbol: ZIC4
  hgvsc: ENST00000480015.1:n.382-49T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.625-49T>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.493-49T>C
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7680
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

3-147108669-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108669
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108669
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 82974
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1154+49C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1004+49C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.492+49C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.386+49C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.624+49C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.690+49C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2003+49C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.738+49C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1651+49C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1004+49C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1118+49C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1004+49C>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

3-147108677-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108677
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108676
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 79492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2003+40delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.738+40delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.690+40delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1004+40delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.386+40delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1651+40delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1004+40delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1118+40delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.492+40delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.624+40delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1004+40delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1154+40delC
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11089
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: CG
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

3-147108680-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108680
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108680
    reference: chr 3
allele count: 4
allele frequency: 4.868549172346641e-5
allele num: 82160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1004+38C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.738+38C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1004+38C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1004+38C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1118+38C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.492+38C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.386+38C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.690+38C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.624+38C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1154+38C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2003+38C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1651+38C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10633
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17193
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

3-147108690-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108690
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108690
    reference: chr 3
allele count: 9
allele frequency: 1.074113856068743e-4
allele num: 83790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.738+28A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.492+28A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1004+28A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.690+28A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.624+28A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2003+28A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1004+28A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1118+28A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1651+28A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1004+28A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1154+28A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.386+28A>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17937
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12692
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14496
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

3-147108697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108697
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108697
    reference: chr 3
allele count: 2
allele frequency: 2.32910213112845e-5
allele num: 85870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1651+21G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.624+21G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.738+21G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2003+21G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.690+21G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.492+21G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1004+21G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1118+21G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.386+21G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1004+21G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1004+21G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1154+21G>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23592
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12521
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

3-147108698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108698
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108698
    reference: chr 3
allele count: 1
allele frequency: 1.151569589350284e-5
allele num: 86838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.690+20G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.624+20G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.386+20G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1004+20G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1004+20G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1004+20G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.492+20G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.738+20G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2003+20G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1118+20G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1651+20G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1154+20G>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

3-147108702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108702
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108702
    reference: chr 3
allele count: 1
allele frequency: 1.124302932182047e-5
allele num: 88944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.624+16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.690+16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1004+16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1651+16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1004+16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1004+16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.386+16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.738+16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2003+16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1154+16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1118+16C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.492+16C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

3-147108704-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108704
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108704
    reference: chr 3
allele count: 1
allele frequency: 1.104752645882587e-5
allele num: 90518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.738+14G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.624+14G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.690+14G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1154+14G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1004+14G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.492+14G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1004+14G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1004+14G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2003+14G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1651+14G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.386+14G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1118+14G>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-147108706-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108706
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108706
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 91704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1004+12A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1118+12A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1651+12A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2003+12A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.624+12A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.738+12A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1154+12A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.690+12A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1004+12A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.386+12A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.492+12A>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1004+12A>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10872
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

3-147108709-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108709
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108709
    reference: chr 3
allele count: 1
allele frequency: 1.07284626113078e-5
allele num: 93210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1004+9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.690+9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.386+9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2003+9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.738+9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.624+9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1004+9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1651+9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1154+9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1118+9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.492+9G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1004+9G>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-147108713-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108713
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108713
    reference: chr 3
allele count: 2
allele frequency: 2.100443193513832e-5
allele num: 95218
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.738+5G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1154+5G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.690+5G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1004+5G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.386+5G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1004+5G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1004+5G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.624+5G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.492+5G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1651+5G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2003+5G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1118+5G>C
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1154+5G>C
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-147108714-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108714
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108714
    reference: chr 3
allele count: 1
allele frequency: 1.042622403870214e-5
allele num: 95912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.492+4C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1154+4C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.386+4C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1004+4C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.690+4C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.624+4C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1004+4C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1651+4C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1118+4C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.738+4C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.2003+4C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1004+4C>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1154+4C>A
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

3-147108722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108722
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108722
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 99330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.1000G>A
  hgvsp: ENSP00000420775.1:p.Glu334Lys
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.488G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1999G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.734G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.1000G>A
  hgvsp: ENSP00000372553.3:p.Glu334Lys
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.686G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1647G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.1000G>A
  hgvsp: ENSP00000417855.1:p.Glu334Lys
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.382G>A
  hgvsp: ENSP00000418277.1:p.Glu128Lys
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1114G>A
  hgvsp: ENSP00000397695.3:p.Glu372Lys
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1150G>A
  hgvsp: ENSP00000435509.2:p.Glu384Lys
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.620G>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu384Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

3-147108723-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108723
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108723
    reference: chr 3
allele count: 1
allele frequency: 1.001201441730076e-5
allele num: 99880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.999C>A
  hgvsp: ENSP00000420775.1:p.Ser333Arg
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.685C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1149C>A
  hgvsp: ENSP00000435509.2:p.Ser383Arg
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1113C>A
  hgvsp: ENSP00000397695.3:p.Ser371Arg
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.619C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.381C>A
  hgvsp: ENSP00000418277.1:p.Ser127Arg
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.999C>A
  hgvsp: ENSP00000372553.3:p.Ser333Arg
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.999C>A
  hgvsp: ENSP00000417855.1:p.Ser333Arg
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1646C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.487C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1998C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.733C>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8393
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser383Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

3-147108726-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108726
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108726
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 101144
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1146G>A
  hgvsp: ENST00000525172.2:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.996G>A
  hgvsp: ENST00000473123.1:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1110G>A
  hgvsp: ENST00000425731.3:c.1110G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.616G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.996G>A
  hgvsp: ENST00000484399.1:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.378G>A
  hgvsp: ENST00000491672.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.996G>A
  hgvsp: ENST00000383075.3:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.682G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.730G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1643G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1995G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.484G>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7143
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu382Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

3-147108731-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108731
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108730
    reference: chr 3
allele count: 1
allele frequency: 9.760096820160457e-6
allele num: 102458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.990delC
  hgvsp: ENSP00000420775.1:p.Asp331ThrfsTer2
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.372delC
  hgvsp: ENSP00000418277.1:p.Asp125ThrfsTer2
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.990delC
  hgvsp: ENSP00000372553.3:p.Asp331ThrfsTer2
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1989delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1637delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.478delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1140delC
  hgvsp: ENSP00000435509.2:p.Asp381ThrfsTer2
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.724delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.610delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.676delC
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1104delC
  hgvsp: ENSP00000397695.3:p.Asp369ThrfsTer2
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.990delC
  hgvsp: ENSP00000417855.1:p.Asp331ThrfsTer2
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp381ThrfsTer2
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: CG
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

3-147108732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108732
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108732
    reference: chr 3
allele count: 52
allele frequency: 5.036709866139749e-4
allele num: 103242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.372C>T
  hgvsp: ENST00000491672.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1989C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1104C>T
  hgvsp: ENST00000425731.3:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.610C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.990C>T
  hgvsp: ENST00000484399.1:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.724C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.990C>T
  hgvsp: ENST00000383075.3:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.478C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1140C>T
  hgvsp: ENST00000525172.2:c.1140C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1637C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.990C>T
  hgvsp: ENST00000473123.1:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.676C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 9335
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36164
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
hgvs: p.Ala380Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

3-147108732-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108732
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108732
    reference: chr 3
allele count: 1
allele frequency: 9.685980511807211e-6
allele num: 103242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.990C>A
  hgvsp: ENST00000473123.1:c.990C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1104C>A
  hgvsp: ENST00000425731.3:c.1104C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.372C>A
  hgvsp: ENST00000491672.1:c.372C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.724C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.610C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.478C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1140C>A
  hgvsp: ENST00000525172.2:c.1140C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.676C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.990C>A
  hgvsp: ENST00000484399.1:c.990C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.990C>A
  hgvsp: ENST00000383075.3:c.990C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1989C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1637C>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9335
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala380Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-147108734-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108734
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108734
    reference: chr 3
allele count: 1
allele frequency: 9.654746273267938e-6
allele num: 103576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.674G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.608G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1102G>T
  hgvsp: ENSP00000397695.3:p.Ala368Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.988G>T
  hgvsp: ENSP00000417855.1:p.Ala330Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1138G>T
  hgvsp: ENSP00000435509.2:p.Ala380Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.988G>T
  hgvsp: ENSP00000372553.3:p.Ala330Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.370G>T
  hgvsp: ENSP00000418277.1:p.Ala124Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.988G>T
  hgvsp: ENSP00000420775.1:p.Ala330Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.722G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.476G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1987G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1635G>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala380Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

3-147108735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108735
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108735
    reference: chr 3
allele count: 1
allele frequency: 9.604118245903844e-6
allele num: 104122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.721C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.607C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1137C>T
  hgvsp: ENST00000525172.2:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.987C>T
  hgvsp: ENST00000484399.1:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.673C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.475C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1101C>T
  hgvsp: ENST00000425731.3:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.987C>T
  hgvsp: ENST00000383075.3:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.369C>T
  hgvsp: ENST00000491672.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1986C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.987C>T
  hgvsp: ENST00000473123.1:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1634C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr379Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/3-147108739-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108739
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108739
    reference: chr 3
allele count: 1
allele frequency: 9.514023670890893e-6
allele num: 105108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.983G>T
  hgvsp: ENSP00000417855.1:p.Arg328Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.603G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.983G>T
  hgvsp: ENSP00000420775.1:p.Arg328Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.717G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.365G>T
  hgvsp: ENSP00000418277.1:p.Arg122Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.471G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1982G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.983G>T
  hgvsp: ENSP00000372553.3:p.Arg328Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.669G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1133G>T
  hgvsp: ENSP00000435509.2:p.Arg378Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1097G>T
  hgvsp: ENSP00000397695.3:p.Arg366Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1630G>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg378Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/3-147108741-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108741
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108741
    reference: chr 3
allele count: 1
allele frequency: 9.481189320388349e-6
allele num: 105472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.981G>T
  hgvsp: ENST00000383075.3:c.981G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.981G>T
  hgvsp: ENST00000484399.1:c.981G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.667G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.601G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1095G>T
  hgvsp: ENST00000425731.3:c.1095G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.363G>T
  hgvsp: ENST00000491672.1:c.363G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.981G>T
  hgvsp: ENST00000473123.1:c.981G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1628G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1980G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.715G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.469G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1131G>T
  hgvsp: ENST00000525172.2:c.1131G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala377Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

3-147108742-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108742
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108742
    reference: chr 3
allele count: 3
allele frequency: 2.834306445212856e-5
allele num: 105846
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1130C>T
  hgvsp: ENSP00000435509.2:p.Ala377Val
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.980C>T
  hgvsp: ENSP00000372553.3:p.Ala327Val
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.666C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.714C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.468C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.600C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1979C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.980C>T
  hgvsp: ENSP00000417855.1:p.Ala327Val
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.980C>T
  hgvsp: ENSP00000420775.1:p.Ala327Val
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.362C>T
  hgvsp: ENSP00000418277.1:p.Ala121Val
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1094C>T
  hgvsp: ENSP00000397695.3:p.Ala365Val
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1627C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala377Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/3-147108744-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108744
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108744
    reference: chr 3
allele count: 3
allele frequency: 2.815949538184276e-5
allele num: 106536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.978G>T
  hgvsp: ENST00000484399.1:c.978G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.712G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1092G>T
  hgvsp: ENST00000425731.3:c.1092G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1128G>T
  hgvsp: ENST00000525172.2:c.1128G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.598G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.360G>T
  hgvsp: ENST00000491672.1:c.360G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.664G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.978G>T
  hgvsp: ENST00000383075.3:c.978G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1977G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1625G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.978G>T
  hgvsp: ENST00000473123.1:c.978G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.466G>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36217
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala376Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-147108752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108752
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108752
    reference: chr 3
allele count: 1
allele frequency: 9.180376028202115e-6
allele num: 108928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.704G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.656G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.970G>A
  hgvsp: ENSP00000372553.3:p.Ala324Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1617G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.458G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.590G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.970G>A
  hgvsp: ENSP00000420775.1:p.Ala324Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1084G>A
  hgvsp: ENSP00000397695.3:p.Ala362Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1120G>A
  hgvsp: ENSP00000435509.2:p.Ala374Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.970G>A
  hgvsp: ENSP00000417855.1:p.Ala324Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.352G>A
  hgvsp: ENSP00000418277.1:p.Ala118Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1969G>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala374Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/3-147108756-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108756
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108756
    reference: chr 3
allele count: 8
allele frequency: 7.258342557477e-5
allele num: 110218
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.454G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.700G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.966G>T
  hgvsp: ENST00000473123.1:c.966G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1965G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1080G>T
  hgvsp: ENST00000425731.3:c.1080G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.348G>T
  hgvsp: ENST00000491672.1:c.348G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.652G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.966G>T
  hgvsp: ENST00000484399.1:c.966G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.586G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.966G>T
  hgvsp: ENST00000383075.3:c.966G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1613G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1116G>T
  hgvsp: ENST00000525172.2:c.1116G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35221
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser372Ser
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-147108756-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108756
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108756
    reference: chr 3
allele count: 3580
allele frequency: 3.248108294470958e-2
allele num: 110218
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1965G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1116G>C
  hgvsp: ENST00000525172.2:c.1116G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.586G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.652G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1613G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.348G>C
  hgvsp: ENST00000491672.1:c.348G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.966G>C
  hgvsp: ENST00000473123.1:c.966G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.700G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.966G>C
  hgvsp: ENST00000383075.3:c.966G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.966G>C
  hgvsp: ENST00000484399.1:c.966G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.454G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1080G>C
  hgvsp: ENST00000425731.3:c.1080G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35221
  bin: 2.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 328
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 478
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 7.5e0
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 3.25e1
  variant carriers: 415
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 371
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 12570
  bin: 2.75e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 247
genotype quality: GenotypeQuality
hgvs: p.Ser372Ser
num of homozygotes: 81
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

3-147108757-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108757
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108757
    reference: chr 3
allele count: 804
allele frequency: 7.264053775681682e-3
allele num: 110682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.453C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.347C>T
  hgvsp: ENSP00000418277.1:p.Ser116Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1079C>T
  hgvsp: ENSP00000397695.3:p.Ser360Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.965C>T
  hgvsp: ENSP00000417855.1:p.Ser322Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1964C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.699C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.965C>T
  hgvsp: ENSP00000372553.3:p.Ser322Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1115C>T
  hgvsp: ENSP00000435509.2:p.Ser372Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.585C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.651C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.965C>T
  hgvsp: ENSP00000420775.1:p.Ser322Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1612C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35545
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 14158
  bin: 2.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
hgvs: p.Ser372Leu
num of homozygotes: 19
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

3-147108757-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108757
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108757
    reference: chr 3
allele count: 1
allele frequency: 9.034892755822988e-6
allele num: 110682
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.585C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.453C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.965C>G
  hgvsp: ENSP00000417855.1:p.Ser322Trp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.965C>G
  hgvsp: ENSP00000420775.1:p.Ser322Trp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1079C>G
  hgvsp: ENSP00000397695.3:p.Ser360Trp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.347C>G
  hgvsp: ENSP00000418277.1:p.Ser116Trp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.965C>G
  hgvsp: ENSP00000372553.3:p.Ser322Trp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1964C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.651C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1115C>G
  hgvsp: ENSP00000435509.2:p.Ser372Trp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.699C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1612C>G
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35545
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser372Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

3-147108759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108759
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108759
    reference: chr 3
allele count: 10
allele frequency: 8.996041741633681e-5
allele num: 111160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.649C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1962C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.697C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.963C>T
  hgvsp: ENST00000383075.3:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.345C>T
  hgvsp: ENST00000491672.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1113C>T
  hgvsp: ENST00000525172.2:c.1113C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1077C>T
  hgvsp: ENST00000425731.3:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.451C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1610C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.963C>T
  hgvsp: ENST00000473123.1:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.963C>T
  hgvsp: ENST00000484399.1:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.583C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14663
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser371Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

3-147108763-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108763
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108763
    reference: chr 3
allele count: 1
allele frequency: 8.945343948474819e-6
allele num: 111790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.959C>T
  hgvsp: ENSP00000372553.3:p.Ala320Val
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.959C>T
  hgvsp: ENSP00000417855.1:p.Ala320Val
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.693C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.645C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1606C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.341C>T
  hgvsp: ENSP00000418277.1:p.Ala114Val
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.959C>T
  hgvsp: ENSP00000420775.1:p.Ala320Val
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1109C>T
  hgvsp: ENSP00000435509.2:p.Ala370Val
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.447C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1073C>T
  hgvsp: ENSP00000397695.3:p.Ala358Val
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.579C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1958C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala370Val
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

3-147108763-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108763
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108763
    reference: chr 3
allele count: 1
allele frequency: 8.945343948474819e-6
allele num: 111790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.645C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.693C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1109C>A
  hgvsp: ENSP00000435509.2:p.Ala370Asp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1606C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.959C>A
  hgvsp: ENSP00000417855.1:p.Ala320Asp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.579C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.341C>A
  hgvsp: ENSP00000418277.1:p.Ala114Asp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.447C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1958C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.959C>A
  hgvsp: ENSP00000372553.3:p.Ala320Asp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1073C>A
  hgvsp: ENSP00000397695.3:p.Ala358Asp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.959C>A
  hgvsp: ENSP00000420775.1:p.Ala320Asp
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala370Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

3-147108765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108765
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108765
    reference: chr 3
allele count: 2
allele frequency: 1.785331714632579e-5
allele num: 112024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1604G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.577G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.957G>A
  hgvsp: ENST00000473123.1:c.957G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1107G>A
  hgvsp: ENST00000525172.2:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.957G>A
  hgvsp: ENST00000484399.1:c.957G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.643G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.445G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1071G>A
  hgvsp: ENST00000425731.3:c.1071G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.957G>A
  hgvsp: ENST00000383075.3:c.957G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1956G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.691G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.339G>A
  hgvsp: ENST00000491672.1:c.339G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14974
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val369Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

3-147108768-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108768
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108768
    reference: chr 3
allele count: 1
allele frequency: 8.898380494749955e-6
allele num: 112380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.954G>C
  hgvsp: ENSP00000420775.1:p.Gln318His
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.336G>C
  hgvsp: ENSP00000418277.1:p.Gln112His
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.954G>C
  hgvsp: ENSP00000417855.1:p.Gln318His
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.688G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1601G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.954G>C
  hgvsp: ENSP00000372553.3:p.Gln318His
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1068G>C
  hgvsp: ENSP00000397695.3:p.Gln356His
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1953G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.442G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1104G>C
  hgvsp: ENSP00000435509.2:p.Gln368His
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.640G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.574G>C
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln368His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

3-147108771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108771
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108771
    reference: chr 3
allele count: 1
allele frequency: 8.870123649523674e-6
allele num: 112738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.571C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1101C>T
  hgvsp: ENST00000525172.2:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.685C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.637C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1950C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.951C>T
  hgvsp: ENST00000484399.1:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.439C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.951C>T
  hgvsp: ENST00000383075.3:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1065C>T
  hgvsp: ENST00000425731.3:c.1065C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.333C>T
  hgvsp: ENST00000491672.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.951C>T
  hgvsp: ENST00000473123.1:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1598C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser367Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-147108781-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108781
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108781
    reference: chr 3
allele count: 1
allele frequency: 8.823633219214344e-6
allele num: 113332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.323G>A
  hgvsp: ENSP00000418277.1:p.Gly108Asp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1091G>A
  hgvsp: ENSP00000435509.2:p.Gly364Asp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1055G>A
  hgvsp: ENSP00000397695.3:p.Gly352Asp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1940G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.941G>A
  hgvsp: ENSP00000420775.1:p.Gly314Asp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.941G>A
  hgvsp: ENSP00000417855.1:p.Gly314Asp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.941G>A
  hgvsp: ENSP00000372553.3:p.Gly314Asp
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.561G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.429G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1588G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.627G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.675G>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly364Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-147108788-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108788
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108788
    reference: chr 3
allele count: 1
allele frequency: 8.768391701594093e-6
allele num: 114046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.668G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1048G>A
  hgvsp: ENSP00000397695.3:p.Asp350Asn
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.934G>A
  hgvsp: ENSP00000420775.1:p.Asp312Asn
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1084G>A
  hgvsp: ENSP00000435509.2:p.Asp362Asn
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1581G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.554G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.422G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.934G>A
  hgvsp: ENSP00000372553.3:p.Asp312Asn
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.934G>A
  hgvsp: ENSP00000417855.1:p.Asp312Asn
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.316G>A
  hgvsp: ENSP00000418277.1:p.Asp106Asn
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1933G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.620G>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp362Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

3-147108792-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108792
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108792
    reference: chr 3
allele count: 1
allele frequency: 8.736981896973509e-6
allele num: 114456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.616G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.930G>C
  hgvsp: ENST00000383075.3:c.930G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.930G>C
  hgvsp: ENST00000484399.1:c.930G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.664G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.930G>C
  hgvsp: ENST00000473123.1:c.930G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1080G>C
  hgvsp: ENST00000525172.2:c.1080G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1577G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.550G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1044G>C
  hgvsp: ENST00000425731.3:c.1044G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1929G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.418G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.312G>C
  hgvsp: ENST00000491672.1:c.312G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser360Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

3-147108797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108797
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108797
    reference: chr 3
allele count: 1
allele frequency: 8.687946343243384e-6
allele num: 115102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1039C>T
  hgvsp: ENSP00000397695.3:p.Pro347Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.545C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.413C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.659C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1924C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1075C>T
  hgvsp: ENSP00000435509.2:p.Pro359Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.307C>T
  hgvsp: ENSP00000418277.1:p.Pro103Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.925C>T
  hgvsp: ENSP00000420775.1:p.Pro309Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.925C>T
  hgvsp: ENSP00000417855.1:p.Pro309Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.925C>T
  hgvsp: ENSP00000372553.3:p.Pro309Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1572C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.611C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro359Ser
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/3-147108803-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108803
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108803
    reference: chr 3
allele count: 1
allele frequency: 8.657109218089895e-6
allele num: 115512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1918G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.919G>T
  hgvsp: ENSP00000417855.1:p.Val307Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.919G>T
  hgvsp: ENSP00000420775.1:p.Val307Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.539G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.605G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1033G>T
  hgvsp: ENSP00000397695.3:p.Val345Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.919G>T
  hgvsp: ENSP00000372553.3:p.Val307Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1069G>T
  hgvsp: ENSP00000435509.2:p.Val357Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.301G>T
  hgvsp: ENSP00000418277.1:p.Val101Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.653G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.407G>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1566G>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37117
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val357Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

3-147108803-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108803
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108803
    reference: chr 3
allele count: 3
allele frequency: 2.597132765426969e-5
allele num: 115512
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.919G>C
  hgvsp: ENSP00000420775.1:p.Val307Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1566G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1033G>C
  hgvsp: ENSP00000397695.3:p.Val345Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.605G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.919G>C
  hgvsp: ENSP00000372553.3:p.Val307Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1918G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.301G>C
  hgvsp: ENSP00000418277.1:p.Val101Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.919G>C
  hgvsp: ENSP00000417855.1:p.Val307Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.539G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1069G>C
  hgvsp: ENSP00000435509.2:p.Val357Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.653G>C
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.407G>C
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val357Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

3-147108804-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108804
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108804
    reference: chr 3
allele count: 1
allele frequency: 8.644536652835408e-6
allele num: 115680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.918C>A
  hgvsp: ENST00000383075.3:c.918C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.538C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1917C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.300C>A
  hgvsp: ENST00000491672.1:c.300C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.918C>A
  hgvsp: ENST00000473123.1:c.918C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.652C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1068C>A
  hgvsp: ENST00000525172.2:c.1068C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.406C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.604C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1032C>A
  hgvsp: ENST00000425731.3:c.1032C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.918C>A
  hgvsp: ENST00000484399.1:c.918C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1565C>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu356Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-147108807-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108807
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108807
    reference: chr 3
allele count: 1
allele frequency: 8.624258313785014e-6
allele num: 115952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1562C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.297C>A
  hgvsp: ENST00000491672.1:c.297C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.915C>A
  hgvsp: ENST00000473123.1:c.915C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1914C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.601C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.403C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1065C>A
  hgvsp: ENST00000525172.2:c.1065C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1029C>A
  hgvsp: ENST00000425731.3:c.1029C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.915C>A
  hgvsp: ENST00000383075.3:c.915C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.915C>A
  hgvsp: ENST00000484399.1:c.915C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.649C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.535C>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala355Ala
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

3-147108809-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108809
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108809
    reference: chr 3
allele count: 1
allele frequency: 8.617123948710878e-6
allele num: 116048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.647G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.913G>A
  hgvsp: ENSP00000420775.1:p.Ala305Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.913G>A
  hgvsp: ENSP00000372553.3:p.Ala305Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.913G>A
  hgvsp: ENSP00000417855.1:p.Ala305Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1027G>A
  hgvsp: ENSP00000397695.3:p.Ala343Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.533G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.599G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1063G>A
  hgvsp: ENSP00000435509.2:p.Ala355Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.401G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.295G>A
  hgvsp: ENSP00000418277.1:p.Ala99Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1560G>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1912G>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala355Thr
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-147108812-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108812
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108812
    reference: chr 3
allele count: 1
allele frequency: 8.60096674866255e-6
allele num: 116266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.292T>A
  hgvsp: ENSP00000418277.1:p.Ser98Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.910T>A
  hgvsp: ENSP00000420775.1:p.Ser304Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.596T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1060T>A
  hgvsp: ENSP00000435509.2:p.Ser354Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.644T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.910T>A
  hgvsp: ENSP00000417855.1:p.Ser304Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1909T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1024T>A
  hgvsp: ENSP00000397695.3:p.Ser342Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.910T>A
  hgvsp: ENSP00000372553.3:p.Ser304Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.530T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1557T>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.398T>A
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser354Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

3-147108814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108814
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108814
    reference: chr 3
allele count: 8
allele frequency: 6.86919338496677e-5
allele num: 116462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1907C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1555C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.594C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.908C>T
  hgvsp: ENSP00000372553.3:p.Pro303Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.642C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.908C>T
  hgvsp: ENSP00000420775.1:p.Pro303Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.396C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.528C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1022C>T
  hgvsp: ENSP00000397695.3:p.Pro341Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.290C>T
  hgvsp: ENSP00000418277.1:p.Pro97Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1058C>T
  hgvsp: ENSP00000435509.2:p.Pro353Leu
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.908C>T
  hgvsp: ENSP00000417855.1:p.Pro303Leu
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37531
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro353Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

3-147108814-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108814
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108814
    reference: chr 3
allele count: 1
allele frequency: 8.586491731208463e-6
allele num: 116462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.528C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.908C>G
  hgvsp: ENSP00000420775.1:p.Pro303Arg
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.908C>G
  hgvsp: ENSP00000372553.3:p.Pro303Arg
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1058C>G
  hgvsp: ENSP00000435509.2:p.Pro353Arg
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.396C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.642C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.290C>G
  hgvsp: ENSP00000418277.1:p.Pro97Arg
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1022C>G
  hgvsp: ENSP00000397695.3:p.Pro341Arg
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.908C>G
  hgvsp: ENSP00000417855.1:p.Pro303Arg
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1907C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1555C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.594C>G
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro353Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

3-147108815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108815
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108815
    reference: chr 3
allele count: 1
allele frequency: 8.581039335484314e-6
allele num: 116536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1554C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1021C>T
  hgvsp: ENSP00000397695.3:p.Pro341Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1906C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.641C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.289C>T
  hgvsp: ENSP00000418277.1:p.Pro97Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1057C>T
  hgvsp: ENSP00000435509.2:p.Pro353Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.907C>T
  hgvsp: ENSP00000417855.1:p.Pro303Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.907C>T
  hgvsp: ENSP00000420775.1:p.Pro303Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.395C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.527C>T
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.907C>T
  hgvsp: ENSP00000372553.3:p.Pro303Ser
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.593C>T
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro353Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

3-147108815-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108815
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108815
    reference: chr 3
allele count: 1
allele frequency: 8.581039335484314e-6
allele num: 116536
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.907C>G
  hgvsp: ENSP00000372553.3:p.Pro303Ala
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1057C>G
  hgvsp: ENSP00000435509.2:p.Pro353Ala
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1554C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.395C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.641C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1021C>G
  hgvsp: ENSP00000397695.3:p.Pro341Ala
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.907C>G
  hgvsp: ENSP00000420775.1:p.Pro303Ala
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.907C>G
  hgvsp: ENSP00000417855.1:p.Pro303Ala
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1906C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.593C>G
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.289C>G
  hgvsp: ENSP00000418277.1:p.Pro97Ala
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.527C>G
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro353Ala
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-147108815-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 147108815
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 147108815
    reference: chr 3
allele count: 1
allele frequency: 8.581039335484314e-6
allele num: 116536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000418277
  ensembl transcript: ENST00000491672
  gene symbol: ZIC4
  hgvsc: ENST00000491672.1:c.289C>A
  hgvsp: ENSP00000418277.1:p.Pro97Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000435509
  ensembl transcript: ENST00000525172
  gene symbol: ZIC4
  hgvsc: ENST00000525172.2:c.1057C>A
  hgvsp: ENSP00000435509.2:p.Pro353Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000494569
  gene symbol: ZIC4
  hgvsc: ENST00000494569.1:n.1906C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000420775
  ensembl transcript: ENST00000473123
  gene symbol: ZIC4
  hgvsc: ENST00000473123.1:c.907C>A
  hgvsp: ENSP00000420775.1:p.Pro303Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000372553
  ensembl transcript: ENST00000383075
  gene symbol: ZIC4
  hgvsc: ENST00000383075.3:c.907C>A
  hgvsp: ENSP00000372553.3:p.Pro303Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000397695
  ensembl transcript: ENST00000425731
  gene symbol: ZIC4
  hgvsc: ENST00000425731.3:c.1021C>A
  hgvsp: ENSP00000397695.3:p.Pro341Thr
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000472749
  gene symbol: ZIC4
  hgvsc: ENST00000472749.2:n.641C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000493664
  gene symbol: ZIC4
  hgvsc: ENST00000493664.1:n.1554C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000463850
  gene symbol: ZIC4
  hgvsc: ENST00000463850.1:n.527C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000475502
  gene symbol: ZIC4
  hgvsc: ENST00000475502.1:n.593C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174963
  ensembl transcript: ENST00000464502
  gene symbol: ZIC4
  hgvsc: ENST00000464502.1:n.395C>A
  variant of: http://identifiers.org/hgnc/20393
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174963
  ensembl protein: ENSP00000417855
  ensembl transcript: ENST00000484399
  gene symbol: ZIC4
  hgvsc: ENST00000484399.1:c.907C>A
  hgvsp: ENSP00000417855.1:p.Pro303Thr
  variant of: http://identifiers.org/hgnc/20393
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro353Thr
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 64
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 252
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1053
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4170
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18773
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3577
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12972
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.732e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
type: SiteQuality
SIO_000300: 1.043e1

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 2.835e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 2.430498e6

GenotypeDepth
all individuals: 499
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1053
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 252
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18771
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4171
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3575
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

FS
type: SiteQuality
SIO_000300: 1.223e0

DP
type: SiteQuality
SIO_000300: 2.43067e6

QD
type: SiteQuality
SIO_000300: 1.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 195
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 252
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 343
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13011
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18766
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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ClippingRankSum
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SIO_000300: -7.17e-1

QD
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SIO_000300: 1.033e1

FS
type: SiteQuality
SIO_000300: 1.082e0

ReadPosRankSum
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SIO_000300: 1.01e0

MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.7e-3

VQSLOD
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DP
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.041232904674423e-4
allele num: 9798
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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InbreedingCoeff
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DP
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QD
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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SIO_000300: 6.051e1

ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

African
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Latino
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East Asian
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South Asian
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European (Finnish)
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num of homozygotes: 0

QD
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SIO_000300: 1.218e1

ClippingRankSum
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DP
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MQ
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

African
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allele count: 0
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Other
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East Asian
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South Asian
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European (Finnish)
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InbreedingCoeff
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MQ
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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SIO_000300: 5.319e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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VQSLOD
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DP
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MQ
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ClippingRankSum
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GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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Latino
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Other
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East Asian
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European (Non-Finnish)
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European (Finnish)
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

VQSLOD
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SIO_000300: 2.02e0

QD
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SIO_000300: 1.024e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

BaseQRankSum
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SIO_000300: -1.06e-1

GenotypeDepth
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bin: 6.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.024e1

ClippingRankSum
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SIO_000300: 1.44e0

VQSLOD
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FS
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SIO_000300: 9.11e-1

MQRankSum
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SIO_000300: -1.06e-1

BaseQRankSum
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SIO_000300: -1.06e-1

DP
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SIO_000300: 2.429032e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

GenotypeDepth
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bin: 5.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

QD
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MQ
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SIO_000300: 5.922e1

MQRankSum
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SIO_000300: -2.2e-1

ClippingRankSum
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SIO_000300: 1.99e-1

BaseQRankSum
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SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
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SIO_000300: -1.523e0

FS
type: SiteQuality
SIO_000300: 1.0833e1

DP
type: SiteQuality
SIO_000300: 2.426289e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.123e0

MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: 1.59e0

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

DP
type: SiteQuality
SIO_000300: 2.42356e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Latino
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allele count: 7
allele frequency: 6.052222030088189e-4
allele num: 11566
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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FS
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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BaseQRankSum
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DP
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SIO_000300: 2.423093e6

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.27639823624971e-3
allele num: 8618
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66672
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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VQSLOD
type: SiteQuality
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MQRankSum
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FS
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BaseQRankSum
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DP
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MQ
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QD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11568
num of homozygotes: 0

African
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East Asian
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66664
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South Asian
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allele num: 16462
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European (Finnish)
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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FS
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VQSLOD
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DP
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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East Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 8.652015919709292e-5
allele num: 11558
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South Asian
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Other
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-3

FS
type: SiteQuality
SIO_000300: 1.621e0

BaseQRankSum
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SIO_000300: -3.442e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

DP
type: SiteQuality
SIO_000300: 2.403329e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.46e-1

QD
type: SiteQuality
SIO_000300: 8.51e0

GenotypeDepth
all individuals: 498
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 194
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5523
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.022076860179886e-4
allele num: 9784
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.376333e6

VQSLOD
type: SiteQuality
SIO_000300: 3.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

BaseQRankSum
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SIO_000300: 3.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.28e-1

FS
type: SiteQuality
SIO_000300: 1.672e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeDepth
all individuals: 12
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5288
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3830
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5936
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

BaseQRankSum
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SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 8.39794e5

VQSLOD
type: SiteQuality
SIO_000300: -2.742e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

QD
type: SiteQuality
SIO_000300: 8.34e0

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12565
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.651e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.18e-2

DP
type: SiteQuality
SIO_000300: 8.22039e5

GenotypeDepth
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1987
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 4
allele frequency: 5.943536404160475e-4
allele num: 6730
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47330
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 2.11e-1

InbreedingCoeff
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SIO_000300: -1.04e-2

DP
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.072e0

ClippingRankSum
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SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1526
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.306620209059234e-3
allele num: 6888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48142
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.836e0

VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 8.94497e5

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4040
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.066969822240595e-4
allele num: 9676
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.332e0

ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.70135e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 3508
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GenotypeQuality
all individuals: 351
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.012558364192562e-5
allele num: 49688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4192
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.82719e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

FS
type: SiteQuality
SIO_000300: 2.834e0

QD
type: SiteQuality
SIO_000300: 1.197e1

MQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

BaseQRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7230
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.551831160769708e-4
allele num: 6444
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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QD
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InbreedingCoeff
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DP
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: -2.83e-1

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.94265288678219e-5
allele num: 51476
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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MQ
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FS
type: SiteQuality
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QD
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BaseQRankSum
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SIO_000300: -1.71e-1

VQSLOD
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ReadPosRankSum
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SIO_000300: -1.02e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52112
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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FS
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BaseQRankSum
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MQRankSum
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SIO_000300: -6.840000000000001e-1

DP
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ClippingRankSum
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SIO_000300: 3.22e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7496
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.892004389450184e-5
allele num: 52854
num of homozygotes: 0

African
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allele count: 0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -3.869e0

InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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FS
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DP
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ReadPosRankSum
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MQ
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SIO_000300: 5.919e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6836
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.714020427112349e-5
allele num: 53850
num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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MQ
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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Latino
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allele frequency: 0.0e0
allele num: 10446
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 54152
num of homozygotes: 0

European (Finnish)
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African
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Other
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South Asian
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BaseQRankSum
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QD
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DP
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: 1.62e-1

MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7122
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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Latino
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Other
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 582
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.789228842368939e-5
allele num: 55890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 7.67e-1

DP
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SIO_000300: 1.180685e6

QD
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SIO_000300: 5.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

InbreedingCoeff
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SIO_000300: 6.5e-3

VQSLOD
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SIO_000300: -1.348e0

FS
type: SiteQuality
SIO_000300: 4.429e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeDepth
all individuals: 16
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
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variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10696
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56426
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.196317e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
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SIO_000300: 5.947e1

BaseQRankSum
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SIO_000300: -5.5e-1

InbreedingCoeff
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SIO_000300: -4.1e-3

FS
type: SiteQuality
SIO_000300: 4.936e0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.077e1

GenotypeDepth
all individuals: 10
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variant carriers: 0

GenotypeDepth
all individuals: 7
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 629
bin: 7.25e1
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GenotypeQuality
all individuals: 39752
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5244
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.257229067136032e-4
allele num: 7954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.212777e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 3.743e0

ReadPosRankSum
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SIO_000300: 7.1e-1

InbreedingCoeff
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SIO_000300: -3.0e-3

VQSLOD
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SIO_000300: 1.74e0

QD
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SIO_000300: 1.177e1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

GenotypeDepth
all individuals: 248
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variant carriers: 5

GenotypeDepth
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 171
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6553
bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 50

GenotypeQuality
all individuals: 40761
bin: 6.25e1
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GenotypeQuality
all individuals: 3108
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 2.085703450891164e-3
allele num: 5274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 7.164325155518278e-4
allele num: 57228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.265e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.18e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.22029e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.94e-1

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeDepth
all individuals: 10
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1978
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variant carriers: 0

GenotypeQuality
all individuals: 681
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40761
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
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variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 642
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57228
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.203572972194209e-5
allele num: 13882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.22029e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
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SIO_000300: 3.8e-1

QD
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SIO_000300: 1.265e1

FS
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VQSLOD
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ReadPosRankSum
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SIO_000300: 6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

GenotypeDepth
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bin: 9.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 657
bin: 7.25e1
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GenotypeQuality
all individuals: 1058
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.256597134958532e-4
allele num: 7958
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

FS
type: SiteQuality
SIO_000300: 6.888e0

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

MQRankSum
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SIO_000300: 3.7e-1

QD
type: SiteQuality
SIO_000300: 1.128e1

DP
type: SiteQuality
SIO_000300: 1.227127e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e0

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 567
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14220
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.228497600590623e-5
allele num: 10836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57594
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

FS
type: SiteQuality
SIO_000300: 1.527e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
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SIO_000300: 5.92e1

QD
type: SiteQuality
SIO_000300: 7.93e0

DP
type: SiteQuality
SIO_000300: 1.230762e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.724494723046147e-5
allele num: 57988
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10894
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5380
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7550
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
SIO_000300: 3.921e0

MQRankSum
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SIO_000300: 1.12e0

QD
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VQSLOD
type: SiteQuality
SIO_000300: -1.22e-1

BaseQRankSum
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SIO_000300: -1.535e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.49e-1

DP
type: SiteQuality
SIO_000300: 1.243764e6

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.720045409198803e-5
allele num: 58138
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14742
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10918
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.252717e6

VQSLOD
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SIO_000300: -2.906e0

ClippingRankSum
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SIO_000300: 1.45e0

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 0.0e0

QD
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 678
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GenotypeQuality
all individuals: 574
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.145974132903358e-5
allele num: 58298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10928
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

FS
type: SiteQuality
SIO_000300: 1.5394e1

QD
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SIO_000300: 1.334e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
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SIO_000300: -2.7e-3

MQRankSum
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SIO_000300: 2.06e0

BaseQRankSum
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SIO_000300: 3.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.425e0

DP
type: SiteQuality
SIO_000300: 1.25733e6

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 289
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GenotypeQuality
all individuals: 4998
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.704971697469822e-5
allele num: 58652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.330140994945464e-4
allele num: 15036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8048
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

DP
type: SiteQuality
SIO_000300: 1.264688e6

QD
type: SiteQuality
SIO_000300: 1.251e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4377
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.424257998201208e-5
allele num: 15566
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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VQSLOD
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SIO_000300: 3.58e-1

InbreedingCoeff
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SIO_000300: -2.9e-3

ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.298049e6

QD
type: SiteQuality
SIO_000300: 1.161e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3878
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.994423457456377e-5
allele num: 11118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.154963041182682e-4
allele num: 60608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.349e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.673e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

QD
type: SiteQuality
SIO_000300: 1.319e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 1.381968e6

GenotypeDepth
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variant carriers: 507

GenotypeDepth
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variant carriers: 9

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3441

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 17

GenotypeQuality
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bin: 3.25e1
variant carriers: 3

GenotypeQuality
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variant carriers: 19

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 145
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variant carriers: 6

African
type: Population
allele count: 78
allele frequency: 9.774436090225564e-3
allele num: 7980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

Latino
type: Population
allele count: 165
allele frequency: 1.484079870480302e-2
allele num: 11118
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 3007
allele frequency: 4.961391235480465e-2
allele num: 60608
num of homozygotes: 73

European (Finnish)
type: Population
allele count: 110
allele frequency: 1.908396946564886e-2
allele num: 5764
num of homozygotes: 1

South Asian
type: Population
allele count: 190
allele frequency: 1.20222728423184e-2
allele num: 15804
num of homozygotes: 4

Other
type: Population
allele count: 30
allele frequency: 3.836317135549872e-2
allele num: 782
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
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QD
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SIO_000300: 1.319e1

BaseQRankSum
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VQSLOD
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MQ
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SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 1.349e0

InbreedingCoeff
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SIO_000300: 2.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e-1

DP
type: SiteQuality
SIO_000300: 1.381968e6

GenotypeDepth
all individuals: 4
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variant carriers: 3

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 778

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 103
bin: 8.75e1
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GenotypeQuality
all individuals: 561
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 2
allele frequency: 2.485089463220676e-4
allele num: 8048
num of homozygotes: 0

East Asian
type: Population
allele count: 167
allele frequency: 2.039570102589155e-2
allele num: 8188
num of homozygotes: 4

Latino
type: Population
allele count: 624
allele frequency: 5.604454823064487e-2
allele num: 11134
num of homozygotes: 15

Other
type: Population
allele count: 2
allele frequency: 2.544529262086514e-3
allele num: 786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.150747986191024e-4
allele num: 60830
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.25675505843911e-4
allele num: 15914
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

DP
type: SiteQuality
SIO_000300: 1.34991e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.394e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

InbreedingCoeff
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SIO_000300: 2.88e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.94e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.283775292195552e-5
allele num: 15914
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.88e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 2.09e-1

ClippingRankSum
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SIO_000300: -8.3e-2

ReadPosRankSum
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SIO_000300: 4.15e-1

DP
type: SiteQuality
SIO_000300: 1.34991e6

VQSLOD
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SIO_000300: 5.94e0

QD
type: SiteQuality
SIO_000300: 1.394e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 250
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.310143788280764e-4
allele num: 61062
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.250781347668459e-5
allele num: 15998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8114
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.218917601170161e-4
allele num: 8204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.36e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

FS
type: SiteQuality
SIO_000300: 6.56e-1

DP
type: SiteQuality
SIO_000300: 1.340393e6

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.04e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeDepth
all individuals: 18
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
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variant carriers: 0

GenotypeQuality
all individuals: 383
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variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 3680
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GenotypeQuality
all individuals: 3592
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 47555
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 723
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 233
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GenotypeQuality
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GenotypeQuality
all individuals: 108
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GenotypeQuality
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GenotypeQuality
all individuals: 586
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GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 248
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GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 187
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GenotypeQuality
all individuals: 595
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.93016610108948e-5
allele num: 11198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

DP
type: SiteQuality
SIO_000300: 1.348368e6

FS
type: SiteQuality
SIO_000300: 8.384e0

ReadPosRankSum
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SIO_000300: 1.15e0

MQ
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SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.103e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 47555
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 595
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 586
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GenotypeQuality
all individuals: 1160
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GenotypeQuality
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GenotypeQuality
all individuals: 3680
bin: 6.75e1
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GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.220703125e-4
allele num: 8192
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 4.3e-3

MQRankSum
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SIO_000300: 1.25e0

VQSLOD
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FS
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BaseQRankSum
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DP
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SIO_000300: 1.348368e6

ClippingRankSum
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SIO_000300: 5.97e-1

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 250
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GenotypeQuality
all individuals: 220
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.250130005200208e-5
allele num: 61536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11216
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
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SIO_000300: 1.67e0

InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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VQSLOD
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BaseQRankSum
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FS
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SIO_000300: 5.72e0

DP
type: SiteQuality
SIO_000300: 1.351788e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.27e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 718
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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South Asian
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allele frequency: 6.181998021760633e-5
allele num: 16176
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11226
num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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MQRankSum
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FS
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ClippingRankSum
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DP
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MQ
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.901548869503294e-5
allele num: 11234
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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DP
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SIO_000300: 1.359709e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -3.9e-2

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 1.208021261174197e-4
allele num: 8278
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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DP
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QD
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ClippingRankSum
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SIO_000300: 2.56e-1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele num: 8296
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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Other
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MQ
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SIO_000300: 5.967e1

ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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FS
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.849557522123894e-5
allele num: 11300
num of homozygotes: 0

South Asian
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allele count: 0
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European (Non-Finnish)
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allele num: 62878
num of homozygotes: 0

European (Finnish)
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Other
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African
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East Asian
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ReadPosRankSum
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SIO_000300: -1.233e0

ClippingRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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FS
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DP
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SIO_000300: 1.380616e6

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 1.199616122840691e-4
allele num: 8336
num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
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Latino
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South Asian
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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VQSLOD
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BaseQRankSum
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FS
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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South Asian
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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South Asian
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ClippingRankSum
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MQRankSum
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DP
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FS
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MQ
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ReadPosRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 63570
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.802816901408451e-5
allele num: 11360
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

FS
type: SiteQuality
SIO_000300: 1.031e1

MQ
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SIO_000300: 5.968e1

QD
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VQSLOD
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BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

ReadPosRankSum
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SIO_000300: 5.2e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.121076233183857e-4
allele num: 8920
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -1.4e-3

MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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MQRankSum
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FS
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DP
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.567545537197856e-5
allele num: 63794
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MQRankSum
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SIO_000300: 1.21e0

VQSLOD
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FS
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MQ
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QD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -2.83e-1

ReadPosRankSum
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DP
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SIO_000300: 1.398793e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8984
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.563868384836732e-5
allele num: 63944
num of homozygotes: 0

Other
type: Population
allele count: 0
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FS
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SIO_000300: 1.786e0

InbreedingCoeff
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 5.82e1

DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 7
allele frequency: 8.329366968110424e-4
allele num: 8404
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.561475281846288e-5
allele num: 64042
num of homozygotes: 0

Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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MQ
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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Other
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African
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South Asian
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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DP
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MQ
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Finnish)
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East Asian
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African
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South Asian
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European (Non-Finnish)
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FS
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VQSLOD
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DP
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ReadPosRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 585
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189909566872918e-4
allele num: 8404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: 6.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.404886e6

FS
type: SiteQuality
SIO_000300: 4.109e0

QD
type: SiteQuality
SIO_000300: 1.107e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3