1-32165728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32165728
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32165728
    reference: chr 1
allele count: 1
allele frequency: 8.309650828472188e-6
allele num: 120342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.74-12C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.74-12C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.74-12C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.225-12C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9516
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9230
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

1-32165733-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32165733
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32165732
    reference: chr 1
allele count: 1
allele frequency: 8.31255195344971e-6
allele num: 120300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.74-18delC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.225-18delC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.74-18delC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.74-18delC
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24069
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4647
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 515
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: AG
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

1-32165739-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32165739
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32165739
    reference: chr 1
allele count: 1
allele frequency: 8.320159747067144e-6
allele num: 120190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.74-23C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.225-23C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.74-23C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.74-23C>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13466
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3299
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genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

1-32165746-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32165746
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32165746
    reference: chr 1
allele count: 2
allele frequency: 1.66514028806927e-5
allele num: 120110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.74-30C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.74-30C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.74-30C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.225-30C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12469
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

1-32165749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32165749
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32165749
    reference: chr 1
allele count: 3
allele frequency: 2.4997500249975e-5
allele num: 120012
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.74-33G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.225-33G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.74-33G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.74-33G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17265
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4263
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9449
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3037
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

1-32165750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32165750
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32165750
    reference: chr 1
allele count: 1
allele frequency: 8.342927700188551e-6
allele num: 119862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.225-34C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.74-34C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.74-34C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.74-34C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17119
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1902
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3191
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7629
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9426
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 1852
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4170
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

1-32165755-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32165755
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32165755
    reference: chr 1
allele count: 1
allele frequency: 8.342092530490349e-6
allele num: 119874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.225-39C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.74-39C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.74-39C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.74-39C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17180
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-32165759-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32165759
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32165759
    reference: chr 1
allele count: 749
allele frequency: 6.255428609607804e-3
allele num: 119736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.225-43T>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.74-43T>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.74-43T>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.74-43T>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 14321
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  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 3.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 239
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 3.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 2.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 585
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  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7620
  bin: 1.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 6936
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  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 706
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 974
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 3814
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 3109
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 93
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 387
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 8.25e1
  variant carriers: 5
num of homozygotes: 24
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

1-32167673-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167673
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167673
    reference: chr 1
allele count: 9
allele frequency: 7.458975634012929e-5
allele num: 120660
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.73+49C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1765C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.73+49C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.73+49C>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8808
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15009
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9404
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

1-32167678-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167678
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167678
    reference: chr 1
allele count: 44
allele frequency: 3.646731202758255e-4
allele num: 120656
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.73+44G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1760G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.73+44G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.73+44G>C
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15053
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8793
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4106
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12126
  bin: 9.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-32167683-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167683
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167683
    reference: chr 1
allele count: 1
allele frequency: 8.288162845823595e-6
allele num: 120654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1755C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.73+39C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.73+39C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.73+39C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12085
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1865
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3096
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

1-32167691-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167691
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167691
    reference: chr 1
allele count: 939
allele frequency: 7.781552995773597e-3
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1747C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.73+31C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.73+31C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.73+31C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8734
  bin: 3.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 15157
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 5.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 6.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 5.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 4.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 4.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 9.75e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 17158
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 6.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 9411
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25396
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 51
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

1-32167705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167705
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167705
    reference: chr 1
allele count: 1
allele frequency: 8.287201246395068e-6
allele num: 120668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.73+17G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.73+17G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.73+17G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1733G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9542
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11513
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

1-32167711-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167711
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167711
    reference: chr 1
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.73+11A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.73+11A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.73+11A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1727A>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15411
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
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genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 17
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9539
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genotype quality: GenotypeQuality
  all individuals: 123
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genotype quality: GenotypeQuality
  all individuals: 4115
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 73
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

1-32167723-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167723
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167723
    reference: chr 1
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.72A>G
  hgvsp: ENST00000373668.3:c.72A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.72A>G
  hgvsp: ENST00000373672.3:c.72A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.72A>G
  hgvsp: ENST00000271069.6:c.72A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1715A>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3120
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4111
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25894
  bin: 6.25e1
  variant carriers: 0
hgvs: c.72A>G
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

1-32167725-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167725
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167725
    reference: chr 1
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.70A>G
  hgvsp: ENSP00000362772.3:p.Thr24Ala
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.70A>G
  hgvsp: ENSP00000271069.6:p.Thr24Ala
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.70A>G
  hgvsp: ENSP00000362776.3:p.Thr24Ala
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1713A>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2967
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr24Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-32167741-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167741
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167741
    reference: chr 1
allele count: 232
allele frequency: 1.922853780231074e-3
allele num: 120654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1697C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.54C>T
  hgvsp: ENST00000271069.6:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.54C>T
  hgvsp: ENST00000373668.3:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.54C>T
  hgvsp: ENST00000373672.3:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15414
  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 227
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genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 118
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 9.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 5.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11571
  bin: 9.75e1
  variant carriers: 228
genotype quality: GenotypeQuality
  all individuals: 3103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe18Phe
num of homozygotes: 4
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

1-32167749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167749
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167749
    reference: chr 1
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.46G>A
  hgvsp: ENSP00000271069.6:p.Ala16Thr
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.46G>A
  hgvsp: ENSP00000362772.3:p.Ala16Thr
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1689G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.46G>A
  hgvsp: ENSP00000362776.3:p.Ala16Thr
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17394
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 1855
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genotype depth: GenotypeDepth
  all individuals: 581
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
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genotype quality: GenotypeQuality
  all individuals: 25928
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14
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genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala16Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

1-32167750-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167750
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167750
    reference: chr 1
allele count: 1
allele frequency: 8.288437629506838e-6
allele num: 120650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.45G>A
  hgvsp: ENSP00000271069.6:p.Trp15Ter
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.45G>A
  hgvsp: ENSP00000362776.3:p.Trp15Ter
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.45G>A
  hgvsp: ENSP00000362772.3:p.Trp15Ter
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1688G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 25923
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Trp15Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/1-32167753-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167753
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167753
    reference: chr 1
allele count: 2
allele frequency: 1.657769967839263e-5
allele num: 120644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.42T>G
  hgvsp: ENST00000271069.6:c.42T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.42T>G
  hgvsp: ENST00000373672.3:c.42T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1685T>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.42T>G
  hgvsp: ENST00000373668.3:c.42T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 813
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu14Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

1-32167758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167758
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167758
    reference: chr 1
allele count: 91
allele frequency: 7.544103992571959e-4
allele num: 120624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1680G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.37G>A
  hgvsp: ENSP00000271069.6:p.Gly13Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.37G>A
  hgvsp: ENSP00000362776.3:p.Gly13Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.37G>A
  hgvsp: ENSP00000362772.3:p.Gly13Ser
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15366
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8821
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly13Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-32167759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167759
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167759
    reference: chr 1
allele count: 3
allele frequency: 2.48719096652241e-5
allele num: 120618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.36C>T
  hgvsp: ENST00000373668.3:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.36C>T
  hgvsp: ENST00000271069.6:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.36C>T
  hgvsp: ENST00000373672.3:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1679C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15390
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11366
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu12Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

1-32167759-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167759
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167759
    reference: chr 1
allele count: 1
allele frequency: 8.290636555074699e-6
allele num: 120618
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.36C>A
  hgvsp: ENST00000373672.3:c.36C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.36C>A
  hgvsp: ENST00000373668.3:c.36C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1679C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.36C>A
  hgvsp: ENST00000271069.6:c.36C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25782
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu12Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-32167770-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167770
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167770
    reference: chr 1
allele count: 1
allele frequency: 8.290636555074699e-6
allele num: 120618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1668C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.25C>A
  hgvsp: ENSP00000362772.3:p.Leu9Met
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.25C>A
  hgvsp: ENSP00000362776.3:p.Leu9Met
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.25C>A
  hgvsp: ENSP00000271069.6:p.Leu9Met
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11356
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9541
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu9Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/1-32167779-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167779
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167779
    reference: chr 1
allele count: 3
allele frequency: 2.487892257679294e-5
allele num: 120584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1659G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.16G>T
  hgvsp: ENSP00000362772.3:p.Ala6Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.16G>T
  hgvsp: ENSP00000271069.6:p.Ala6Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.16G>T
  hgvsp: ENSP00000362776.3:p.Ala6Ser
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4100
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala6Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

1-32167779-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167779
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167779
    reference: chr 1
allele count: 1
allele frequency: 8.292974192264313e-6
allele num: 120584
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.16G>A
  hgvsp: ENSP00000362776.3:p.Ala6Thr
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1659G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.16G>A
  hgvsp: ENSP00000271069.6:p.Ala6Thr
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.16G>A
  hgvsp: ENSP00000362772.3:p.Ala6Thr
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 4.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1239
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9502
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala6Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

1-32167797-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167797
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167797
    reference: chr 1
allele count: 1
allele frequency: 8.299443937256203e-6
allele num: 120490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1641G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.-3G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.-3G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.-3G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17264
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 1081
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 361
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genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-32167798-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167798
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167798
    reference: chr 1
allele count: 1
allele frequency: 8.301786544464368e-6
allele num: 120456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1640C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.-4C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.-4C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.-4C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

1-32167800-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167800
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167800
    reference: chr 1
allele count: 1
allele frequency: 8.301786544464368e-6
allele num: 120456
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.-6A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.-6A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.-6A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1638A>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 808
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1829
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 3053
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 9384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11343
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

1-32167810-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167810
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167810
    reference: chr 1
allele count: 1
allele frequency: 8.30675172780436e-6
allele num: 120384
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.-16A>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.-16A>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1628A>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.-16A>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14986
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2921
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9315
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genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-32167827-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167827
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167827
    reference: chr 1
allele count: 1
allele frequency: 8.317806760713336e-6
allele num: 120224
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.-33T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.-33T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.-33T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1611T>C
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8526
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genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 1081
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genotype depth: GenotypeDepth
  all individuals: 1836
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genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 430
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 164
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11280
  bin: 9.75e1
  variant carriers: 1
hgvs: c.-33T>C
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

1-32167831-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167831
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167831
    reference: chr 1
allele count: 1
allele frequency: 8.325008325008325e-6
allele num: 120120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.-34-3C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.-34-3C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1607C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.-34-3C>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1270
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 8401
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genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1833
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2305
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
hgvs: c.-34-3C>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD

1-32167834-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167834
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167834
    reference: chr 1
allele count: 1
allele frequency: 8.326810664979099e-6
allele num: 120094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1604T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.-34-6T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.-34-6T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.-34-6T>C
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11736
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11261
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7883
  bin: 6.75e1
  variant carriers: 0
hgvs: c.-34-6T>C
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ

1-32167843-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167843
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167844
    reference: chr 1
allele count: 1
allele frequency: 8.388980235562565e-6
allele num: 119204
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1594dupT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.-34-16dupT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.-34-16dupT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.-34-16dupT
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10846
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6069
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3716
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-32167846-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32167846
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32167846
    reference: chr 1
allele count: 6
allele frequency: 5.071336804381635e-5
allele num: 118312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362772
  ensembl transcript: ENST00000373668
  gene symbol: COL16A1
  hgvsc: ENST00000373668.3:c.-34-18G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.-34-18G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000532877
  gene symbol: COL16A1
  hgvsc: ENST00000532877.1:n.224+1592G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.-34-18G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8986
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11204
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5046
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6386
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11252
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

1-32192973-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32192973
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32192972
    reference: chr 1
allele count: 1
allele frequency: 1.129509566946032e-5
allele num: 88534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.931delA
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.*47delA
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1515delA
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.*47delA
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.*47delA
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2681delA
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.*47delA
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.*47delA
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.*47delA
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1539delA
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.*47delA
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.*47delA
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10742
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6760
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14026
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: AT
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

1-32192976-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32192976
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32192976
    reference: chr 1
allele count: 1
allele frequency: 1.126532083633742e-5
allele num: 88768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.*45C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2679C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.*45C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.*45C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1513C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.*45C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.*45C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.*45C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.*45C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1537C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.929C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.*45C>G
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8515
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

1-32192978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32192978
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32192978
    reference: chr 1
allele count: 5
allele frequency: 5.602617542916051e-5
allele num: 89244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2677C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.*43C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1535C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.*43C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.*43C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1511C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.927C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.*43C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.*43C>T
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11009
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19748
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

1-32192980-G-GAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32192980
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32192982
    reference: chr 1
allele count: 3
allele frequency: 3.3665499596014e-5
allele num: 89112
alternate allele: GAT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.*39_*40dupAT
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1507_1508dupAT
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.*39_*40dupAT
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.*39_*40dupAT
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.*39_*40dupAT
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.*39_*40dupAT
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.*39_*40dupAT
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.*39_*40dupAT
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1531_1532dupAT
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.923_924dupAT
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2673_2674dupAT
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.*39_*40dupAT
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19131
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14021
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP

1-32192980-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32192980
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32192980
    reference: chr 1
allele count: 3
allele frequency: 3.3665499596014e-5
allele num: 89112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.*41C>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.*41C>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.925C>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.*41C>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.*41C>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.*41C>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.*41C>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1533C>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.*41C>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.*41C>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1509C>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2675C>A
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12661
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19131
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-32192982-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32192982
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32192982
    reference: chr 1
allele count: 4
allele frequency: 4.455434516251198e-5
allele num: 89778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1507A>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.*39A>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.*39A>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.*39A>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.923A>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.*39A>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.*39A>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1531A>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.*39A>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2673A>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.*39A>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.*39A>C
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

1-32192999-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32192999
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32192999
    reference: chr 1
allele count: 9
allele frequency: 8.62217623728229e-5
allele num: 104382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.*22T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.*22T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.*22T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1514T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.*22T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.*22T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.*22T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.*22T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1490T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.*22T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.906T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2656T>C
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37244
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7496
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

1-32193003-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193003
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193003
    reference: chr 1
allele count: 2
allele frequency: 1.852297775390372e-5
allele num: 107974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.*18C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1486C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.*18C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2652C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.*18C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.*18C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.*18C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1510C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.902C>T
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

1-32193013-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193013
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193013
    reference: chr 1
allele count: 10
allele frequency: 8.789354334030623e-5
allele num: 113774
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1476G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2642G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1500G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.*8G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.*8G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.892G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.*8G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.*8G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.*8G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9865
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

1-32193014-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193014
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193014
    reference: chr 1
allele count: 6
allele frequency: 5.244755244755245e-5
allele num: 114400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.*7C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2641C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.891C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.*7C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1475C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.*7C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.*7C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1499C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.*7C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42543
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

1-32193017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193017
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193017
    reference: chr 1
allele count: 1
allele frequency: 8.673929637082785e-6
allele num: 115288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.*4C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.*4C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1472C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2638C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.*4C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.*4C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.888C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.*4C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.*4C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.*4C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.*4C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1496C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.*4C>T
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42795
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

1-32193027-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193027
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193027
    reference: chr 1
allele count: 3
allele frequency: 2.554669936644186e-5
allele num: 117432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1462G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2628G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3522G>A
  hgvsp: ENST00000440175.2:c.3522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4650G>A
  hgvsp: ENST00000527361.1:c.4650G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4659G>A
  hgvsp: ENST00000398538.1:c.4659G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4395G>A
  hgvsp: ENST00000398542.1:c.4395G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4752G>A
  hgvsp: ENST00000373658.3:c.4752G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4650G>A
  hgvsp: ENST00000257070.4:c.4650G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.878G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4494G>A
  hgvsp: ENST00000398547.1:c.4494G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4497G>A
  hgvsp: ENST00000398556.3:c.4497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1486G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4749G>A
  hgvsp: ENST00000373655.2:c.4749G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43597
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu1584Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

1-32193044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193044
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193044
    reference: chr 1
allele count: 63
allele frequency: 5.308660700743213e-4
allele num: 118674
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4735G>A
  hgvsp: ENSP00000362762.3:p.Gly1579Ser
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1445G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3505G>A
  hgvsp: ENSP00000391071.2:p.Gly1169Ser
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4480G>A
  hgvsp: ENSP00000381564.3:p.Gly1494Ser
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.861G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4642G>A
  hgvsp: ENSP00000381548.1:p.Gly1548Ser
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4633G>A
  hgvsp: ENSP00000435397.1:p.Gly1545Ser
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4378G>A
  hgvsp: ENSP00000381550.1:p.Gly1460Ser
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4732G>A
  hgvsp: ENSP00000362759.2:p.Gly1578Ser
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4633G>A
  hgvsp: ENSP00000257070.4:p.Gly1545Ser
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4477G>A
  hgvsp: ENSP00000381555.1:p.Gly1493Ser
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1469G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2611G>A
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 43343
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11763
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Gly1579Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-32193048-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193048
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193048
    reference: chr 1
allele count: 1
allele frequency: 8.418925745074929e-6
allele num: 118780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3501G>T
  hgvsp: ENST00000440175.2:c.3501G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4731G>T
  hgvsp: ENST00000373658.3:c.4731G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4629G>T
  hgvsp: ENST00000257070.4:c.4629G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4638G>T
  hgvsp: ENST00000398538.1:c.4638G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4374G>T
  hgvsp: ENST00000398542.1:c.4374G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4629G>T
  hgvsp: ENST00000527361.1:c.4629G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1465G>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2607G>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.857G>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1441G>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4728G>T
  hgvsp: ENST00000373655.2:c.4728G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4476G>T
  hgvsp: ENST00000398556.3:c.4476G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4473G>T
  hgvsp: ENST00000398547.1:c.4473G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1577Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

1-32193048-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193048
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193048
    reference: chr 1
allele count: 2
allele frequency: 1.683785149014986e-5
allele num: 118780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4629G>A
  hgvsp: ENST00000257070.4:c.4629G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4728G>A
  hgvsp: ENST00000373655.2:c.4728G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2607G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.857G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4473G>A
  hgvsp: ENST00000398547.1:c.4473G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4476G>A
  hgvsp: ENST00000398556.3:c.4476G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1465G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3501G>A
  hgvsp: ENST00000440175.2:c.3501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4374G>A
  hgvsp: ENST00000398542.1:c.4374G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4629G>A
  hgvsp: ENST00000527361.1:c.4629G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4638G>A
  hgvsp: ENST00000398538.1:c.4638G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4731G>A
  hgvsp: ENST00000373658.3:c.4731G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1441G>A
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1577Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

1-32193049-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193049
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193049
    reference: chr 1
allele count: 1266
allele frequency: 1.064688666868503e-2
allele num: 118908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4373C>T
  hgvsp: ENSP00000381550.1:p.Pro1458Leu
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4727C>T
  hgvsp: ENSP00000362759.2:p.Pro1576Leu
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2606C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4628C>T
  hgvsp: ENSP00000257070.4:p.Pro1543Leu
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4475C>T
  hgvsp: ENSP00000381564.3:p.Pro1492Leu
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4730C>T
  hgvsp: ENSP00000362762.3:p.Pro1577Leu
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.856C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1464C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4628C>T
  hgvsp: ENSP00000435397.1:p.Pro1543Leu
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3500C>T
  hgvsp: ENSP00000391071.2:p.Pro1167Leu
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1440C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4637C>T
  hgvsp: ENSP00000381548.1:p.Pro1546Leu
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4472C>T
  hgvsp: ENSP00000381555.1:p.Pro1491Leu
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 3.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 11886
  bin: 2.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1577Leu
num of homozygotes: 86
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-32193049-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193049
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193049
    reference: chr 1
allele count: 1
allele frequency: 8.409863087428936e-6
allele num: 118908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4373C>G
  hgvsp: ENSP00000381550.1:p.Pro1458Arg
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1440C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1464C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4730C>G
  hgvsp: ENSP00000362762.3:p.Pro1577Arg
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4628C>G
  hgvsp: ENSP00000257070.4:p.Pro1543Arg
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2606C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4637C>G
  hgvsp: ENSP00000381548.1:p.Pro1546Arg
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4472C>G
  hgvsp: ENSP00000381555.1:p.Pro1491Arg
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4475C>G
  hgvsp: ENSP00000381564.3:p.Pro1492Arg
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4727C>G
  hgvsp: ENSP00000362759.2:p.Pro1576Arg
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.856C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3500C>G
  hgvsp: ENSP00000391071.2:p.Pro1167Arg
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4628C>G
  hgvsp: ENSP00000435397.1:p.Pro1543Arg
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1577Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

1-32193051-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193051
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193051
    reference: chr 1
allele count: 2
allele frequency: 1.68214237653075e-5
allele num: 118896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4626A>G
  hgvsp: ENST00000527361.1:c.4626A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1462A>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4635A>G
  hgvsp: ENST00000398538.1:c.4635A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4473A>G
  hgvsp: ENST00000398556.3:c.4473A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1438A>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4728A>G
  hgvsp: ENST00000373658.3:c.4728A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3498A>G
  hgvsp: ENST00000440175.2:c.3498A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4470A>G
  hgvsp: ENST00000398547.1:c.4470A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4725A>G
  hgvsp: ENST00000373655.2:c.4725A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4371A>G
  hgvsp: ENST00000398542.1:c.4371A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4626A>G
  hgvsp: ENST00000257070.4:c.4626A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.854A>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2604A>G
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1576Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

1-32193063-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193063
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193063
    reference: chr 1
allele count: 800
allele frequency: 6.736955569778018e-3
allele num: 118748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4614G>A
  hgvsp: ENST00000257070.4:c.4614G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4359G>A
  hgvsp: ENST00000398542.1:c.4359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4458G>A
  hgvsp: ENST00000398547.1:c.4458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4713G>A
  hgvsp: ENST00000373655.2:c.4713G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4461G>A
  hgvsp: ENST00000398556.3:c.4461G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4623G>A
  hgvsp: ENST00000398538.1:c.4623G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3486G>A
  hgvsp: ENST00000440175.2:c.3486G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1426G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.842G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4716G>A
  hgvsp: ENST00000373658.3:c.4716G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1450G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4614G>A
  hgvsp: ENST00000527361.1:c.4614G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2592G>A
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 41198
  bin: 2.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 12518
  bin: 2.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
hgvs: p.Glu1572Glu
num of homozygotes: 8
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

1-32193077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193077
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193077
    reference: chr 1
allele count: 4
allele frequency: 3.383293297695977e-5
allele num: 118228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4345G>A
  hgvsp: ENSP00000381550.1:p.Ala1449Thr
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4609G>A
  hgvsp: ENSP00000381548.1:p.Ala1537Thr
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4600G>A
  hgvsp: ENSP00000257070.4:p.Ala1534Thr
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1436G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3472G>A
  hgvsp: ENSP00000391071.2:p.Ala1158Thr
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4444G>A
  hgvsp: ENSP00000381555.1:p.Ala1482Thr
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4702G>A
  hgvsp: ENSP00000362762.3:p.Ala1568Thr
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4699G>A
  hgvsp: ENSP00000362759.2:p.Ala1567Thr
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.828G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4600G>A
  hgvsp: ENSP00000435397.1:p.Ala1534Thr
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2578G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4447G>A
  hgvsp: ENSP00000381564.3:p.Ala1483Thr
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1412G>A
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12748
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1568Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

1-32193079-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193079
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193079
    reference: chr 1
allele count: 10
allele frequency: 8.463100880162491e-5
allele num: 118160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1434G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4700G>A
  hgvsp: ENSP00000362762.3:p.Arg1567Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4343G>A
  hgvsp: ENSP00000381550.1:p.Arg1448Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4442G>A
  hgvsp: ENSP00000381555.1:p.Arg1481Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3470G>A
  hgvsp: ENSP00000391071.2:p.Arg1157Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4598G>A
  hgvsp: ENSP00000257070.4:p.Arg1533Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4607G>A
  hgvsp: ENSP00000381548.1:p.Arg1536Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4445G>A
  hgvsp: ENSP00000381564.3:p.Arg1482Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2576G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4697G>A
  hgvsp: ENSP00000362759.2:p.Arg1566Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4598G>A
  hgvsp: ENSP00000435397.1:p.Arg1533Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.826G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1410G>A
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40675
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12824
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg1567Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

1-32193080-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193080
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193080
    reference: chr 1
allele count: 2
allele frequency: 1.692706129288894e-5
allele num: 118154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4696C>T
  hgvsp: ENSP00000362759.2:p.Arg1566Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1409C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4342C>T
  hgvsp: ENSP00000381550.1:p.Arg1448Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3469C>T
  hgvsp: ENSP00000391071.2:p.Arg1157Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4597C>T
  hgvsp: ENSP00000435397.1:p.Arg1533Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4444C>T
  hgvsp: ENSP00000381564.3:p.Arg1482Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4597C>T
  hgvsp: ENSP00000257070.4:p.Arg1533Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4441C>T
  hgvsp: ENSP00000381555.1:p.Arg1481Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2575C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4699C>T
  hgvsp: ENSP00000362762.3:p.Arg1567Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4606C>T
  hgvsp: ENSP00000381548.1:p.Arg1536Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.825C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1433C>T
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg1567Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

1-32193086-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193086
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193086
    reference: chr 1
allele count: 1
allele frequency: 8.477881207928515e-6
allele num: 117954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4435C>T
  hgvsp: ENST00000398547.1:c.4435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4438C>T
  hgvsp: ENST00000398556.3:c.4438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4600C>T
  hgvsp: ENST00000398538.1:c.4600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4693C>T
  hgvsp: ENST00000373658.3:c.4693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1427C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4336C>T
  hgvsp: ENST00000398542.1:c.4336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1403C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.819C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4690C>T
  hgvsp: ENST00000373655.2:c.4690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4591C>T
  hgvsp: ENST00000257070.4:c.4591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2569C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3463C>T
  hgvsp: ENST00000440175.2:c.3463C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4591C>T
  hgvsp: ENST00000527361.1:c.4591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1565Leu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

1-32193088-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193088
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193088
    reference: chr 1
allele count: 1
allele frequency: 8.485506754463376e-6
allele num: 117848
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4598C>T
  hgvsp: ENSP00000381548.1:p.Thr1533Ile
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4436C>T
  hgvsp: ENSP00000381564.3:p.Thr1479Ile
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4589C>T
  hgvsp: ENSP00000257070.4:p.Thr1530Ile
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1425C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4433C>T
  hgvsp: ENSP00000381555.1:p.Thr1478Ile
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2567C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4589C>T
  hgvsp: ENSP00000435397.1:p.Thr1530Ile
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.817C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4688C>T
  hgvsp: ENSP00000362759.2:p.Thr1563Ile
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3461C>T
  hgvsp: ENSP00000391071.2:p.Thr1154Ile
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1401C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4691C>T
  hgvsp: ENSP00000362762.3:p.Thr1564Ile
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4334C>T
  hgvsp: ENSP00000381550.1:p.Thr1445Ile
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13024
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1564Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-32193093-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193093
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193093
    reference: chr 1
allele count: 1
allele frequency: 8.519338899301415e-6
allele num: 117380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4329G>T
  hgvsp: ENST00000398542.1:c.4329G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4584G>T
  hgvsp: ENST00000257070.4:c.4584G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.812G>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4593G>T
  hgvsp: ENST00000398538.1:c.4593G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1420G>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4686G>T
  hgvsp: ENST00000373658.3:c.4686G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4428G>T
  hgvsp: ENST00000398547.1:c.4428G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2562G>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4431G>T
  hgvsp: ENST00000398556.3:c.4431G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4683G>T
  hgvsp: ENST00000373655.2:c.4683G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1396G>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3456G>T
  hgvsp: ENST00000440175.2:c.3456G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4584G>T
  hgvsp: ENST00000527361.1:c.4584G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12947
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1562Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ

1-32193093-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193093
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193093
    reference: chr 1
allele count: 2
allele frequency: 1.703867779860283e-5
allele num: 117380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4584G>A
  hgvsp: ENST00000527361.1:c.4584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.812G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3456G>A
  hgvsp: ENST00000440175.2:c.3456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4428G>A
  hgvsp: ENST00000398547.1:c.4428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4683G>A
  hgvsp: ENST00000373655.2:c.4683G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4593G>A
  hgvsp: ENST00000398538.1:c.4593G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1396G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4584G>A
  hgvsp: ENST00000257070.4:c.4584G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4329G>A
  hgvsp: ENST00000398542.1:c.4329G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4431G>A
  hgvsp: ENST00000398556.3:c.4431G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1420G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4686G>A
  hgvsp: ENST00000373658.3:c.4686G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2562G>A
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg1562Arg
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

1-32193094-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193094
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193094
    reference: chr 1
allele count: 1
allele frequency: 8.520209937972871e-6
allele num: 117368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4592G>C
  hgvsp: ENSP00000381548.1:p.Arg1531Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.811G>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4583G>C
  hgvsp: ENSP00000257070.4:p.Arg1528Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4685G>C
  hgvsp: ENSP00000362762.3:p.Arg1562Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4427G>C
  hgvsp: ENSP00000381555.1:p.Arg1476Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4430G>C
  hgvsp: ENSP00000381564.3:p.Arg1477Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2561G>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1419G>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4583G>C
  hgvsp: ENSP00000435397.1:p.Arg1528Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4328G>C
  hgvsp: ENSP00000381550.1:p.Arg1443Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1395G>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4682G>C
  hgvsp: ENSP00000362759.2:p.Arg1561Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3455G>C
  hgvsp: ENSP00000391071.2:p.Arg1152Pro
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1562Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-32193095-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193095
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193095
    reference: chr 1
allele count: 18
allele frequency: 1.534657686077244e-4
allele num: 117290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1394C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4429C>T
  hgvsp: ENSP00000381564.3:p.Arg1477Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1418C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2560C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3454C>T
  hgvsp: ENSP00000391071.2:p.Arg1152Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4591C>T
  hgvsp: ENSP00000381548.1:p.Arg1531Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4327C>T
  hgvsp: ENSP00000381550.1:p.Arg1443Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4426C>T
  hgvsp: ENSP00000381555.1:p.Arg1476Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4681C>T
  hgvsp: ENSP00000362759.2:p.Arg1561Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4582C>T
  hgvsp: ENSP00000257070.4:p.Arg1528Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4582C>T
  hgvsp: ENSP00000435397.1:p.Arg1528Trp
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.810C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4684C>T
  hgvsp: ENSP00000362762.3:p.Arg1562Trp
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13038
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39663
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1562Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

1-32193100-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193100
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193100
    reference: chr 1
allele count: 2
allele frequency: 1.711537474112996e-5
allele num: 116854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4421G>A
  hgvsp: ENSP00000381555.1:p.Arg1474Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3449G>A
  hgvsp: ENSP00000391071.2:p.Arg1150Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4577G>A
  hgvsp: ENSP00000257070.4:p.Arg1526Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4577G>A
  hgvsp: ENSP00000435397.1:p.Arg1526Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4424G>A
  hgvsp: ENSP00000381564.3:p.Arg1475Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4676G>A
  hgvsp: ENSP00000362759.2:p.Arg1559Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.805G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4322G>A
  hgvsp: ENSP00000381550.1:p.Arg1441Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2555G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1413G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4586G>A
  hgvsp: ENSP00000381548.1:p.Arg1529Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4679G>A
  hgvsp: ENSP00000362762.3:p.Arg1560Gln
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1389G>A
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg1560Gln
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

1-32193107-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193107
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193106
    reference: chr 1
allele count: 2
allele frequency: 1.724851662757003e-5
allele num: 115952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3441delC
  hgvsp: ENSP00000391071.2:p.Lys1148SerfsTer6
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4416delC
  hgvsp: ENSP00000381564.3:p.Lys1473SerfsTer6
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.797delC
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4413delC
  hgvsp: ENSP00000381555.1:p.Lys1472SerfsTer6
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4569delC
  hgvsp: ENSP00000257070.4:p.Lys1524SerfsTer6
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2547delC
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4569delC
  hgvsp: ENSP00000435397.1:p.Lys1524SerfsTer6
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1381delC
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4578delC
  hgvsp: ENSP00000381548.1:p.Lys1527SerfsTer6
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4314delC
  hgvsp: ENSP00000381550.1:p.Lys1439SerfsTer6
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1405delC
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4671delC
  hgvsp: ENSP00000362762.3:p.Lys1558SerfsTer6
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4668delC
  hgvsp: ENSP00000362759.2:p.Lys1557SerfsTer6
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys1558SerfsTer6
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: TG
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

1-32193110-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193110
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193110
    reference: chr 1
allele count: 2
allele frequency: 1.73469564764862e-5
allele num: 115294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1403C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4567C>G
  hgvsp: ENSP00000257070.4:p.Pro1523Ala
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4312C>G
  hgvsp: ENSP00000381550.1:p.Pro1438Ala
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1379C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.795C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4576C>G
  hgvsp: ENSP00000381548.1:p.Pro1526Ala
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4669C>G
  hgvsp: ENSP00000362762.3:p.Pro1557Ala
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4666C>G
  hgvsp: ENSP00000362759.2:p.Pro1556Ala
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3439C>G
  hgvsp: ENSP00000391071.2:p.Pro1147Ala
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4414C>G
  hgvsp: ENSP00000381564.3:p.Pro1472Ala
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4567C>G
  hgvsp: ENSP00000435397.1:p.Pro1523Ala
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2545C>G
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4411C>G
  hgvsp: ENSP00000381555.1:p.Pro1471Ala
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1557Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-32193114-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193114
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193114
    reference: chr 1
allele count: 1
allele frequency: 8.730574471800245e-6
allele num: 114540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4563G>A
  hgvsp: ENST00000527361.1:c.4563G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4665G>A
  hgvsp: ENST00000373658.3:c.4665G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.791G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4563G>A
  hgvsp: ENST00000257070.4:c.4563G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4662G>A
  hgvsp: ENST00000373655.2:c.4662G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4308G>A
  hgvsp: ENST00000398542.1:c.4308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4572G>A
  hgvsp: ENST00000398538.1:c.4572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1375G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2541G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3435G>A
  hgvsp: ENST00000440175.2:c.3435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4410G>A
  hgvsp: ENST00000398556.3:c.4410G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4407G>A
  hgvsp: ENST00000398547.1:c.4407G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1399G>A
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1555Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

1-32193115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193115
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193115
    reference: chr 1
allele count: 1
allele frequency: 8.725851206785222e-6
allele num: 114602
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4664T>C
  hgvsp: ENSP00000362762.3:p.Leu1555Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4409T>C
  hgvsp: ENSP00000381564.3:p.Leu1470Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4661T>C
  hgvsp: ENSP00000362759.2:p.Leu1554Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3434T>C
  hgvsp: ENSP00000391071.2:p.Leu1145Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4406T>C
  hgvsp: ENSP00000381555.1:p.Leu1469Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4562T>C
  hgvsp: ENSP00000257070.4:p.Leu1521Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.790T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2540T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4571T>C
  hgvsp: ENSP00000381548.1:p.Leu1524Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4562T>C
  hgvsp: ENSP00000435397.1:p.Leu1521Pro
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1398T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1374T>C
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4307T>C
  hgvsp: ENSP00000381550.1:p.Leu1436Pro
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1555Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

1-32193117-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193117
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193117
    reference: chr 1
allele count: 3
allele frequency: 2.625452890623633e-5
allele num: 114266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4659G>A
  hgvsp: ENST00000373655.2:c.4659G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4305G>A
  hgvsp: ENST00000398542.1:c.4305G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2538G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4560G>A
  hgvsp: ENST00000527361.1:c.4560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4569G>A
  hgvsp: ENST00000398538.1:c.4569G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3432G>A
  hgvsp: ENST00000440175.2:c.3432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4662G>A
  hgvsp: ENST00000373658.3:c.4662G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1372G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1396G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4404G>A
  hgvsp: ENST00000398547.1:c.4404G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.788G>A
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4560G>A
  hgvsp: ENST00000257070.4:c.4560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4407G>A
  hgvsp: ENST00000398556.3:c.4407G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1554Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-32193141-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193141
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32193141
    reference: chr 1
allele count: 2
allele frequency: 1.830630102881412e-5
allele num: 109252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000435397
  ensembl transcript: ENST00000527361
  gene symbol: BAI2
  hgvsc: ENST00000527361.1:c.4536C>T
  hgvsp: ENST00000527361.1:c.4536C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000391071
  ensembl transcript: ENST00000440175
  gene symbol: BAI2
  hgvsc: ENST00000440175.2:c.3408C>T
  hgvsp: ENST00000440175.2:c.3408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362762
  ensembl transcript: ENST00000373658
  gene symbol: BAI2
  hgvsc: ENST00000373658.3:c.4638C>T
  hgvsp: ENST00000373658.3:c.4638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000362759
  ensembl transcript: ENST00000373655
  gene symbol: BAI2
  hgvsc: ENST00000373655.2:c.4635C>T
  hgvsp: ENST00000373655.2:c.4635C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381550
  ensembl transcript: ENST00000398542
  gene symbol: BAI2
  hgvsc: ENST00000398542.1:c.4281C>T
  hgvsp: ENST00000398542.1:c.4281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000257070
  ensembl transcript: ENST00000257070
  gene symbol: BAI2
  hgvsc: ENST00000257070.4:c.4536C>T
  hgvsp: ENST00000257070.4:c.4536C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465256
  gene symbol: BAI2
  hgvsc: ENST00000465256.1:n.2514C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000525655
  gene symbol: BAI2
  hgvsc: ENST00000525655.1:n.1372C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381548
  ensembl transcript: ENST00000398538
  gene symbol: BAI2
  hgvsc: ENST00000398538.1:c.4545C>T
  hgvsp: ENST00000398538.1:c.4545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381555
  ensembl transcript: ENST00000398547
  gene symbol: BAI2
  hgvsc: ENST00000398547.1:c.4380C>T
  hgvsp: ENST00000398547.1:c.4380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000465239
  gene symbol: BAI2
  hgvsc: ENST00000465239.1:n.764C>T
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121753
  ensembl protein: ENSP00000381564
  ensembl transcript: ENST00000398556
  gene symbol: BAI2
  hgvsc: ENST00000398556.3:c.4383C>T
  hgvsp: ENST00000398556.3:c.4383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121753
  ensembl transcript: ENST00000530999
  gene symbol: BAI2
  hgvsc: ENST00000530999.1:n.1348C>T
  variant of: http://identifiers.org/hgnc/944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1546Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

1-32193158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32193158
allele count: 1
allele frequency: 9.754574895626049e-6
allele num: 102516
alternate allele: A
canonical: true
consequence: missense
filter: PASS
hgvs: p.His1541Tyr
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 2126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4707
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.952999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

DP
type: SiteQuality
SIO_000300: 2.035801e6

MQ
type: SiteQuality
SIO_000300: 5.836e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.165e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.858e0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e0

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

GenotypeQuality
all individuals: 794
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.84e-1

FS
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 1.258e1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

DP
type: SiteQuality
SIO_000300: 2.030729e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.68e-1

GenotypeQuality
all individuals: 3237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22218
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66478
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.31e-1

DP
type: SiteQuality
SIO_000300: 2.000878e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.089e0

MQRankSum
type: SiteQuality
SIO_000300: -9.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.437e1

GenotypeQuality
all individuals: 1610
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.024590163934426e-4
allele num: 9760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505026789476853e-5
allele num: 66444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.964918e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

QD
type: SiteQuality
SIO_000300: 8.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.459e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 2079
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7783
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213739531496541e-4
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505888022166672e-5
allele num: 66406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.309e0

DP
type: SiteQuality
SIO_000300: 1.953378e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.01e1

GenotypeQuality
all individuals: 855
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66328
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.058e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.41e-1

DP
type: SiteQuality
SIO_000300: 1.946725e6

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.361e0

GenotypeQuality
all individuals: 7298
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9412
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1273
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507477086348288e-5
allele num: 66336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.445e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

QD
type: SiteQuality
SIO_000300: 1.793e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

DP
type: SiteQuality
SIO_000300: 1.912405e6

VQSLOD
type: SiteQuality
SIO_000300: -3.386e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

GenotypeQuality
all individuals: 1426
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1908
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.169045966257206e-4
allele num: 66266
num of homozygotes: 0

African
type: Population
allele count: 663
allele frequency: 6.818181818181818e-2
allele num: 9724
num of homozygotes: 24

Latino
type: Population
allele count: 64
allele frequency: 5.604203152364273e-3
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.612e1

VQSLOD
type: SiteQuality
SIO_000300: 6.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-2

DP
type: SiteQuality
SIO_000300: 1.895578e6

GenotypeQuality
all individuals: 2978
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12141
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.450581395348837e-4
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.356e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

FS
type: SiteQuality
SIO_000300: 2.359e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

DP
type: SiteQuality
SIO_000300: 2.301032e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

GenotypeQuality
all individuals: 25012
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593809441466367e-4
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 5.999520038396928e-4
allele num: 66672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.936e0

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

FS
type: SiteQuality
SIO_000300: 1.717e0

QD
type: SiteQuality
SIO_000300: 1.262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.59e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 2.301476e6

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.35e-1

FS
type: SiteQuality
SIO_000300: 3.025e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 2.300843e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.058e0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.001e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.4e-2

GenotypeQuality
all individuals: 2910
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12202
bin: 9.75e1
variant carriers: 886

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.199832023516708e-4
allele num: 66676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 881
allele frequency: 9.002656856734111e-2
allele num: 9786
num of homozygotes: 51

Latino
type: Population
allele count: 47
allele frequency: 4.062229904926534e-3
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.355704697986577e-3
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.997e0

DP
type: SiteQuality
SIO_000300: 2.314776e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

FS
type: SiteQuality
SIO_000300: 1.355e0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

QD
type: SiteQuality
SIO_000300: 1.471e1

GenotypeQuality
all individuals: 25858
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3121
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.893e1

QD
type: SiteQuality
SIO_000300: 1.227e1

FS
type: SiteQuality
SIO_000300: 3.777e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.172e0

DP
type: SiteQuality
SIO_000300: 2.284425e6

VQSLOD
type: SiteQuality
SIO_000300: 2.46e-1

GenotypeQuality
all individuals: 11512
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 1.255e0

VQSLOD
type: SiteQuality
SIO_000300: 2.45e-1

QD
type: SiteQuality
SIO_000300: 1.142e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

DP
type: SiteQuality
SIO_000300: 2.284628e6

GenotypeQuality
all individuals: 1249
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 11511
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.06e-1

FS
type: SiteQuality
SIO_000300: 4.451e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.83e-1

DP
type: SiteQuality
SIO_000300: 2.284905e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.313e1

GenotypeQuality
all individuals: 1248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3120
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11510
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.015e1

DP
type: SiteQuality
SIO_000300: 2.284846e6

FS
type: SiteQuality
SIO_000300: 2.186e0

VQSLOD
type: SiteQuality
SIO_000300: -7.183e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.576e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.52e0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25889
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 17
allele frequency: 1.469571230982019e-3
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 67
allele frequency: 1.004859319695243e-3
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023751023751024e-4
allele num: 9768
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.454342984409799e-3
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 143
allele frequency: 8.660368217054263e-3
allele num: 16512
num of homozygotes: 4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.187e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.43e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.42e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 2.295725e6

GenotypeQuality
all individuals: 11410
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.685e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.038e0

FS
type: SiteQuality
SIO_000300: 7.802e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 7.73e0

DP
type: SiteQuality
SIO_000300: 2.282054e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

GenotypeQuality
all individuals: 4108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

FS
type: SiteQuality
SIO_000300: 2.543e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.674e0

DP
type: SiteQuality
SIO_000300: 2.281869e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.103e0

QD
type: SiteQuality
SIO_000300: 2.02e0

GenotypeQuality
all individuals: 3111
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11411
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999490086685263e-5
allele num: 66678
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

DP
type: SiteQuality
SIO_000300: 2.281154e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

VQSLOD
type: SiteQuality
SIO_000300: -6.691e-1

QD
type: SiteQuality
SIO_000300: 1.39e1

GenotypeQuality
all individuals: 4099
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11434
bin: 9.75e1
variant carriers: 91

GenotypeQuality
all individuals: 2951
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.955715279387897e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 5.399892002159956e-4
allele num: 66668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593809441466367e-4
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 46
allele frequency: 2.785852713178295e-3
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

DP
type: SiteQuality
SIO_000300: 2.284745e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.022e1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25782
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 1.476e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

DP
type: SiteQuality
SIO_000300: 2.28007e6

QD
type: SiteQuality
SIO_000300: 1.053e1

GenotypeQuality
all individuals: 4107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11366
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.28007e6

MQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

QD
type: SiteQuality
SIO_000300: 1.053e1

FS
type: SiteQuality
SIO_000300: 1.476e0

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
all individuals: 26035
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3094
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.280419e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.022e0

FS
type: SiteQuality
SIO_000300: 6.201e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
SIO_000300: 1.284e1

GenotypeQuality
all individuals: 2949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25935
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11356
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 3
allele frequency: 3.078817733990148e-4
allele num: 9744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0008e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.717e0

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

DP
type: SiteQuality
SIO_000300: 2.278878e6

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4100
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11356
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2949
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.717e0

DP
type: SiteQuality
SIO_000300: 2.278878e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.89e-1

FS
type: SiteQuality
SIO_000300: 1.0008e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2934
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.36e-1

FS
type: SiteQuality
SIO_000300: 6.958e0

DP
type: SiteQuality
SIO_000300: 2.274102e6

QD
type: SiteQuality
SIO_000300: 8.31e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -4.941e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 3056
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11344
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 423
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.34e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.539e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

DP
type: SiteQuality
SIO_000300: 2.271493e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: 7.09e-1

FS
type: SiteQuality
SIO_000300: 6.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2929
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.916e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 2.271053e6

MQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

QD
type: SiteQuality
SIO_000300: 1.107e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4048
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3019
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.502e0

DP
type: SiteQuality
SIO_000300: 2.263352e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 3.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -3.431e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.031e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.345e0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505706628120577e-5
allele num: 66414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.191e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

MQ
type: SiteQuality
SIO_000300: 5.87e1

DP
type: SiteQuality
SIO_000300: 2.224918e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.21e0

FS
type: SiteQuality
SIO_000300: 2.269e0

QD
type: SiteQuality
SIO_000300: 1.48e1

GenotypeQuality
all individuals: 394
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507204437209863e-5
allele num: 66348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.501e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

QD
type: SiteQuality
SIO_000300: 1.395e1

DP
type: SiteQuality
SIO_000300: 2.196757e6

VQSLOD
type: SiteQuality
SIO_000300: -9.797e-1

GenotypeQuality
all individuals: 3725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20557
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.72e-1

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

DP
type: SiteQuality
SIO_000300: 2.179052e6

VQSLOD
type: SiteQuality
SIO_000300: -2.842e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 734
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2807
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11251
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65764
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

MQ
type: SiteQuality
SIO_000300: 6.098e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 2.108838e6

QD
type: SiteQuality
SIO_000300: 3.04e0

GenotypeQuality
all individuals: 5152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5616
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218472036066772e-4
allele num: 16414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.06597988717194e-5
allele num: 65232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.790436005625879e-5
allele num: 11376
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.04777870913663e-4
allele num: 9544
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

DP
type: SiteQuality
SIO_000300: 2.099549e6

QD
type: SiteQuality
SIO_000300: 1.305e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

FS
type: SiteQuality
SIO_000300: 3.183e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7204
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1416
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4333
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 7.5e0
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GenotypeQuality
all individuals: 487
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3040
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48772
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.669e1

DP
type: SiteQuality
SIO_000300: 8.79426e5

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

FS
type: SiteQuality
SIO_000300: 5.243e0

MQ
type: SiteQuality
SIO_000300: 6.126e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 1436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12166
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variant carriers: 0

GenotypeQuality
all individuals: 8621
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 1840
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variant carriers: 0

GenotypeQuality
all individuals: 2827
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5110
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 121
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variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.04473888684415e-5
allele num: 48906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 4.26e0

DP
type: SiteQuality
SIO_000300: 8.96478e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

QD
type: SiteQuality
SIO_000300: 1.66e1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.464e0

MQRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2669
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
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variant carriers: 0

GenotypeQuality
all individuals: 14031
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variant carriers: 0

GenotypeQuality
all individuals: 6786
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variant carriers: 0

GenotypeQuality
all individuals: 485
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variant carriers: 0

GenotypeQuality
all individuals: 143
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variant carriers: 0

GenotypeQuality
all individuals: 234
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variant carriers: 0

GenotypeQuality
all individuals: 13149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
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variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 642
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 938
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variant carriers: 0

GenotypeQuality
all individuals: 2504
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variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 222
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variant carriers: 0

GenotypeQuality
all individuals: 5090
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
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variant carriers: 0

GenotypeQuality
all individuals: 8566
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.704659738518271e-4
allele num: 5966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13348
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.430615164520744e-4
allele num: 6990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49170
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

QD
type: SiteQuality
SIO_000300: 1.301e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.852e0

DP
type: SiteQuality
SIO_000300: 9.09311e5

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
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variant carriers: 0

GenotypeQuality
all individuals: 300
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variant carriers: 3

GenotypeQuality
all individuals: 6384
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variant carriers: 0

GenotypeQuality
all individuals: 370
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variant carriers: 0

GenotypeQuality
all individuals: 13382
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
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variant carriers: 0

GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 8340
bin: 3.25e1
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GenotypeQuality
all individuals: 15605
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variant carriers: 1

GenotypeQuality
all individuals: 858
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variant carriers: 0

GenotypeQuality
all individuals: 5033
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 4.25e1
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GenotypeQuality
all individuals: 1296
bin: 7.5e0
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GenotypeQuality
all individuals: 152
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GenotypeQuality
all individuals: 1897
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variant carriers: 0

GenotypeQuality
all individuals: 485
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variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.073319755600814e-5
allele num: 49100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.514277126540426e-5
allele num: 13308
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

QD
type: SiteQuality
SIO_000300: 3.332e1

FS
type: SiteQuality
SIO_000300: 8.89e-1

DP
type: SiteQuality
SIO_000300: 9.2413e5

GenotypeDepth
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8340
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2176
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variant carriers: 0

GenotypeQuality
all individuals: 492
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 152
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
all individuals: 2190
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variant carriers: 0

GenotypeQuality
all individuals: 1897
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variant carriers: 0

GenotypeQuality
all individuals: 13382
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GenotypeQuality
all individuals: 858
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GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 485
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GenotypeQuality
all individuals: 84
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GenotypeQuality
all individuals: 1296
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6384
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.109979633401222e-5
allele num: 49100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4422
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

DP
type: SiteQuality
SIO_000300: 9.2413e5

QD
type: SiteQuality
SIO_000300: 3.332e1

FS
type: SiteQuality
SIO_000300: 8.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 447
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2059
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 297
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GenotypeQuality
all individuals: 499
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GenotypeQuality
all individuals: 13095
bin: 2.25e1
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GenotypeQuality
all individuals: 15057
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GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7004
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.144688644688645e-4
allele num: 8736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.494321578003586e-4
allele num: 13384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.022081125894771e-5
allele num: 49454
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 1.771e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.309e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.271e0

VQSLOD
type: SiteQuality
SIO_000300: 7.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

DP
type: SiteQuality
SIO_000300: 9.33466e5

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 9.032517061421116e-4
allele num: 9964
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.433e0

VQSLOD
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SIO_000300: 1.68e0

BaseQRankSum
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SIO_000300: -2.495e0

InbreedingCoeff
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SIO_000300: 4.1e-3

QD
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SIO_000300: 1.236e1

MQRankSum
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SIO_000300: 3.9e-2

ReadPosRankSum
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DP
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ClippingRankSum
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SIO_000300: 6.1e-2

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.681812107443539e-5
allele num: 14966
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.128413450688332e-4
allele num: 8862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59700
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.867e0

BaseQRankSum
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SIO_000300: -1.182e0

ReadPosRankSum
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SIO_000300: 2.98e-1

MQRankSum
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SIO_000300: -2.69e-1

VQSLOD
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SIO_000300: 1.08e0

ClippingRankSum
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SIO_000300: -3.46e-1

QD
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SIO_000300: 1.205e1

MQ
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SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 1.255328e6

InbreedingCoeff
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SIO_000300: -5.0e-4

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3958
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.228497600590623e-5
allele num: 10836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62902
num of homozygotes: 0

South Asian
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allele count: 9
allele frequency: 5.784061696658098e-4
allele num: 15560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 1.323246e6

FS
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SIO_000300: 1.251e0

BaseQRankSum
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SIO_000300: -1.557e0

ClippingRankSum
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SIO_000300: -1.27e-1

ReadPosRankSum
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SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

InbreedingCoeff
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SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 1.179e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 553
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GenotypeQuality
all individuals: 876
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5768
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.175995595522114e-5
allele num: 10898
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.086811352253756e-4
allele num: 9584
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.379819133745835e-4
allele num: 8404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.38895987733197e-5
allele num: 15652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.75e-1

FS
type: SiteQuality
SIO_000300: 2.821e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.329687e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.92e0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeDepth
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3241
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568627450980392e-5
allele num: 63750
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.85e-1

FS
type: SiteQuality
SIO_000300: 6.119e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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BaseQRankSum
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SIO_000300: -2.145e0

InbreedingCoeff
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SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

QD
type: SiteQuality
SIO_000300: 6.36e0

DP
type: SiteQuality
SIO_000300: 1.339872e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.871958068139274e-4
allele num: 16026
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.56e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.364641e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e-2

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.042e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 364
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 969
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GenotypeQuality
all individuals: 50311
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variant carriers: 0

Latino
type: Population
allele count: 42
allele frequency: 3.699788583509514e-3
allele num: 11352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.59637118944346e-4
allele num: 65476
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.587155963302753e-3
allele num: 872
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.43e-1

DP
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QD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 781
bin: 1.25e1
variant carriers: 0

GenotypeDepth
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bin: 2.75e1
variant carriers: 1

GenotypeDepth
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bin: 4.75e1
variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 375
bin: 8.25e1
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GenotypeQuality
all individuals: 868
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526577718071627e-5
allele num: 65506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 4.814e0

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

ClippingRankSum
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SIO_000300: -9.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.382721e6

QD
type: SiteQuality
SIO_000300: 1.092e1

GenotypeDepth
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 6
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50360
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.899029895070283e-5
allele num: 10102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526577718071627e-5
allele num: 65506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-1

FS
type: SiteQuality
SIO_000300: 4.814e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.092e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

DP
type: SiteQuality
SIO_000300: 1.382721e6

GenotypeDepth
all individuals: 24
bin: 9.75e1
variant carriers: 22

GenotypeDepth
all individuals: 197
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variant carriers: 149

GenotypeDepth
all individuals: 460
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variant carriers: 25

GenotypeDepth
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variant carriers: 57

GenotypeDepth
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variant carriers: 14

GenotypeQuality
all individuals: 1606
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variant carriers: 2

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 8
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variant carriers: 1

GenotypeQuality
all individuals: 11
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variant carriers: 1

GenotypeQuality
all individuals: 17
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variant carriers: 2

GenotypeQuality
all individuals: 30
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variant carriers: 5

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 261
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 812
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 109
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variant carriers: 2

GenotypeQuality
all individuals: 4347
bin: 6.75e1
variant carriers: 5

GenotypeQuality
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bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 935
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 349
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1406
bin: 9.75e1
variant carriers: 1128

GenotypeQuality
all individuals: 138
bin: 9.25e1
variant carriers: 7

African
type: Population
allele count: 15
allele frequency: 1.482799525504152e-3
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 1169
allele frequency: 1.024360322467578e-1
allele num: 11412
num of homozygotes: 84

Other
type: Population
allele count: 6
allele frequency: 6.896551724137931e-3
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.230012300123001e-4
allele num: 16260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.152759557006437e-5
allele num: 65554
num of homozygotes: 0

East Asian
type: Population
allele count: 68
allele frequency: 7.899628252788104e-3
allele num: 8608
num of homozygotes: 2

DP
type: SiteQuality
SIO_000300: 1.410883e6

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

QD
type: SiteQuality
SIO_000300: 1.135e1

FS
type: SiteQuality
SIO_000300: 2.551e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.219e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

GenotypeDepth
all individuals: 11
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
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variant carriers: 1

GenotypeDepth
all individuals: 96
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variant carriers: 0

GenotypeDepth
all individuals: 24
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variant carriers: 0

GenotypeDepth
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 812
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
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variant carriers: 1

GenotypeQuality
all individuals: 4347
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variant carriers: 0

GenotypeQuality
all individuals: 49688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
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variant carriers: 0

GenotypeQuality
all individuals: 258
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
all individuals: 261
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variant carriers: 0

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.762705923589205e-5
allele num: 11412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

QD
type: SiteQuality
SIO_000300: 1.135e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

FS
type: SiteQuality
SIO_000300: 2.551e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.219e-1

DP
type: SiteQuality
SIO_000300: 1.410883e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

GenotypeDepth
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
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variant carriers: 0

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeDepth
all individuals: 353
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variant carriers: 1

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 4537
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variant carriers: 0

GenotypeQuality
all individuals: 50346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 374
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 1653
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GenotypeQuality
all individuals: 974
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 890
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variant carriers: 0

GenotypeQuality
all individuals: 161
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GenotypeQuality
all individuals: 166
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GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 132
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GenotypeQuality
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GenotypeQuality
all individuals: 262
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GenotypeQuality
all individuals: 282
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.050547573289405e-5
allele num: 65562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.83e-1

QD
type: SiteQuality
SIO_000300: 1.05e1

VQSLOD
type: SiteQuality
SIO_000300: 4.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 5.472e0

DP
type: SiteQuality
SIO_000300: 1.38682e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

GenotypeDepth
all individuals: 7
bin: 8.25e1
variant carriers: 4

GenotypeDepth
all individuals: 28
bin: 6.75e1
variant carriers: 24

GenotypeDepth
all individuals: 13
bin: 7.25e1
variant carriers: 10

GenotypeDepth
all individuals: 3
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variant carriers: 2

GenotypeDepth
all individuals: 25
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variant carriers: 23

GenotypeQuality
all individuals: 340
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 198
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GenotypeQuality
all individuals: 4373
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GenotypeQuality
all individuals: 324
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GenotypeQuality
all individuals: 94
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GenotypeQuality
all individuals: 328
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GenotypeQuality
all individuals: 911
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 346
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1023
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variant carriers: 786

GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
all individuals: 165
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GenotypeQuality
all individuals: 803
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 312
allele frequency: 3.628750872295883e-2
allele num: 8598
num of homozygotes: 7

Latino
type: Population
allele count: 8
allele frequency: 7.001575354454753e-4
allele num: 11426
num of homozygotes: 1

Other
type: Population
allele count: 6
allele frequency: 6.928406466512702e-3
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 414
allele frequency: 6.320031752816536e-3
allele num: 65506
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.949960285941223e-4
allele num: 10072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 28
allele frequency: 4.597701149425287e-3
allele num: 6090
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.544163063619518e-3
allele num: 16190
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

QD
type: SiteQuality
SIO_000300: 1.103e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

DP
type: SiteQuality
SIO_000300: 1.399435e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.68e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
all individuals: 2342
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variant carriers: 0

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 6
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variant carriers: 1

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 501
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GenotypeQuality
all individuals: 240
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variant carriers: 4

GenotypeQuality
all individuals: 251
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GenotypeQuality
all individuals: 26
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GenotypeQuality
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GenotypeQuality
all individuals: 4339
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GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 106
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GenotypeQuality
all individuals: 93
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GenotypeQuality
all individuals: 515
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GenotypeQuality
all individuals: 284
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GenotypeQuality
all individuals: 600
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 48239
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GenotypeQuality
all individuals: 2277
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GenotypeQuality
all individuals: 513
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GenotypeQuality
all individuals: 802
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GenotypeQuality
all individuals: 308
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GenotypeQuality
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bin: 7.25e1
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 2.494698765124111e-4
allele num: 16034
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European (Finnish)
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allele frequency: 0.0e0
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DP
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ReadPosRankSum
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MQRankSum
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MQ
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

African
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allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

East Asian
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allele frequency: 4.658746797111577e-4
allele num: 8586
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 3.74859427714607e-4
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European (Non-Finnish)
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Other
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QD
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65288
num of homozygotes: 0

South Asian
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African
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allele num: 10014
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Latino
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FS
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65200
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South Asian
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Latino
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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VQSLOD
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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Latino
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European (Non-Finnish)
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allele frequency: 1.534636751480924e-5
allele num: 65162
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VQSLOD
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ClippingRankSum
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MQ
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DP
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QD
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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Other
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East Asian
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Latino
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European (Finnish)
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QD
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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QD
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64922
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.005025125628141e-4
allele num: 9950
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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DP
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MQ
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.233273725103287e-4
allele num: 64868
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9938
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.353240152477764e-4
allele num: 15740
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele frequency: 6.40861317610869e-5
allele num: 15604
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.545833977430824e-5
allele num: 64690
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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FS
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VQSLOD
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DP
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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SIO_000300: 2.59e-1

BaseQRankSum
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SIO_000300: 7.03e-1

MQ
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SIO_000300: 5.899e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5918
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.11284046692607e-5
allele num: 64250
num of homozygotes: 0

ClippingRankSum
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MQRankSum
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VQSLOD
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FS
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.562793023691942e-5
allele num: 63988
num of homozygotes: 0

East Asian
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Other
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African
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.708817498291183e-4
allele num: 5852
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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Other
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South Asian
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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FS
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DP
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ClippingRankSum
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VQSLOD
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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East Asian
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South Asian
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Other
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63694
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.356e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.836e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e0

VQSLOD
type: SiteQuality
SIO_000300: -4.97e0

DP
type: SiteQuality
SIO_000300: 1.314643e6

QD
type: SiteQuality
SIO_000300: 6.41e0

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5606
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43685
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.723516815719864e-5
allele num: 63512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 5.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 1.313444e6

QD
type: SiteQuality
SIO_000300: 1.095e1

GenotypeDepth
all individuals: 15
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1553
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9869
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38489
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.259877428608684e-5
allele num: 61352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 2.378e0

DP
type: SiteQuality
SIO_000300: 1.23819e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1