1-16782309-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782309
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782309
    reference: chr 1
allele count: 4
allele frequency: 3.299785513941594e-5
allele num: 121220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.668-4A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.485-4A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.294A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3308-4A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*200-4A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.590-4A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*280-4A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.668-4A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-3028A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.668-4A>G
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 7.25e1
  variant carriers: 0
hgvs: c.590-4A>G
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

1-16782310-TAGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782310
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782307
    reference: chr 1
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.669_671delAGG
  hgvsp: ENSP00000427620.1:p.Gly224del
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*281_*283delAGG
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.591_593delAGG
  hgvsp: ENSP00000407091.2:p.Gly198del
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.669_671delAGG
  hgvsp: ENSP00000383925.1:p.Gly224del
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.486_488delAGG
  hgvsp: ENSP00000424509.1:p.Gly163del
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.669_671delAGG
  hgvsp: ENSP00000338746.5:p.Gly224del
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3309_3311delAGG
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.299_301delAGG
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*201_*203delAGG
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-3023_668-3021delAGG
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15647
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.591_593delAGG
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: TAGG
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

1-16782319-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782319
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782319
    reference: chr 1
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.596C>T
  hgvsp: ENSP00000407091.2:p.Ala199Val
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*206C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.491C>T
  hgvsp: ENSP00000424509.1:p.Ala164Val
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*286C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.674C>T
  hgvsp: ENSP00000427620.1:p.Ala225Val
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.674C>T
  hgvsp: ENSP00000338746.5:p.Ala225Val
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.674C>T
  hgvsp: ENSP00000383925.1:p.Ala225Val
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.304C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3314C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-3018C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala164Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-16782322-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782322
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782322
    reference: chr 1
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.599C>G
  hgvsp: ENSP00000407091.2:p.Pro200Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.307C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.494C>G
  hgvsp: ENSP00000424509.1:p.Pro165Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*209C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.677C>G
  hgvsp: ENSP00000427620.1:p.Pro226Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3317C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.677C>G
  hgvsp: ENSP00000383925.1:p.Pro226Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.677C>G
  hgvsp: ENSP00000338746.5:p.Pro226Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*289C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-3015C>G
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro165Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

1-16782322-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782322
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782322
    reference: chr 1
allele count: 10
allele frequency: 8.246470510621453e-5
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.677C>T
  hgvsp: ENSP00000383925.1:p.Pro226Leu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.307C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.677C>T
  hgvsp: ENSP00000338746.5:p.Pro226Leu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*289C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.494C>T
  hgvsp: ENSP00000424509.1:p.Pro165Leu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*209C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-3015C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.677C>T
  hgvsp: ENSP00000427620.1:p.Pro226Leu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.599C>T
  hgvsp: ENSP00000407091.2:p.Pro200Leu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3317C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro165Leu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-16782330-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782330
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782330
    reference: chr 1
allele count: 7
allele frequency: 5.771672630728385e-5
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-3007T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.685T>C
  hgvsp: ENSP00000383925.1:p.Trp229Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3325T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.685T>C
  hgvsp: ENSP00000427620.1:p.Trp229Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*217T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.607T>C
  hgvsp: ENSP00000407091.2:p.Trp203Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*297T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.502T>C
  hgvsp: ENSP00000424509.1:p.Trp168Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.685T>C
  hgvsp: ENSP00000338746.5:p.Trp229Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.315T>C
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Trp168Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

1-16782336-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782336
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782336
    reference: chr 1
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.691C>T
  hgvsp: ENSP00000427620.1:p.Gln231Ter
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*223C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.613C>T
  hgvsp: ENSP00000407091.2:p.Gln205Ter
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.691C>T
  hgvsp: ENSP00000338746.5:p.Gln231Ter
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.691C>T
  hgvsp: ENSP00000383925.1:p.Gln231Ter
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.508C>T
  hgvsp: ENSP00000424509.1:p.Gln170Ter
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3331C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*303C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-3001C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.321C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln170Ter
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-16782341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782341
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782341
    reference: chr 1
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.696C>T
  hgvsp: ENST00000406746.1:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.696C>T
  hgvsp: ENST00000492095.1:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2996C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3336C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.696C>T
  hgvsp: ENST00000337132.5:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.326C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.618C>T
  hgvsp: ENST00000457722.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*308C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.513C>T
  hgvsp: ENST00000504551.2:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*228C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro171Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP

1-16782343-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782343
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782343
    reference: chr 1
allele count: 2
allele frequency: 1.649402916144356e-5
allele num: 121256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.620A>G
  hgvsp: ENSP00000407091.2:p.Asn207Ser
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*230A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.698A>G
  hgvsp: ENSP00000427620.1:p.Asn233Ser
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.328A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.515A>G
  hgvsp: ENSP00000424509.1:p.Asn172Ser
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.698A>G
  hgvsp: ENSP00000383925.1:p.Asn233Ser
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*310A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3338A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2994A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.698A>G
  hgvsp: ENSP00000338746.5:p.Asn233Ser
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15831
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn172Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-16782344-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782344
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782344
    reference: chr 1
allele count: 6
allele frequency: 4.976692490171033e-5
allele num: 120562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*311T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2993T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.329T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.699T>C
  hgvsp: ENST00000492095.1:c.699T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.516T>C
  hgvsp: ENST00000504551.2:c.516T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3339T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.699T>C
  hgvsp: ENST00000406746.1:c.699T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*231T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.621T>C
  hgvsp: ENST00000457722.2:c.621T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.699T>C
  hgvsp: ENST00000337132.5:c.699T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 15712
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36366
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6186
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn172Asn
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-16782354-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782354
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782354
    reference: chr 1
allele count: 3
allele frequency: 2.473247704001715e-5
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.526G>A
  hgvsp: ENSP00000424509.1:p.Ala176Thr
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.339G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3349G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.709G>A
  hgvsp: ENSP00000338746.5:p.Ala237Thr
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.709G>A
  hgvsp: ENSP00000383925.1:p.Ala237Thr
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.631G>A
  hgvsp: ENSP00000407091.2:p.Ala211Thr
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*321G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2983G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.709G>A
  hgvsp: ENSP00000427620.1:p.Ala237Thr
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*241G>A
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala176Thr
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

1-16782357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782357
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782357
    reference: chr 1
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2980G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.712G>A
  hgvsp: ENSP00000338746.5:p.Asp238Asn
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.634G>A
  hgvsp: ENSP00000407091.2:p.Asp212Asn
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.712G>A
  hgvsp: ENSP00000427620.1:p.Asp238Asn
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.342G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.712G>A
  hgvsp: ENSP00000383925.1:p.Asp238Asn
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3352G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*244G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*324G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.529G>A
  hgvsp: ENSP00000424509.1:p.Asp177Asn
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp177Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

1-16782359-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782359
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782359
    reference: chr 1
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2978C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.714C>T
  hgvsp: ENST00000337132.5:c.714C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.714C>T
  hgvsp: ENST00000492095.1:c.714C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*246C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.714C>T
  hgvsp: ENST00000406746.1:c.714C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3354C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.636C>T
  hgvsp: ENST00000457722.2:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.531C>T
  hgvsp: ENST00000504551.2:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*326C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.344C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp177Asp
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

1-16782361-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782361
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782361
    reference: chr 1
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.638T>C
  hgvsp: ENSP00000407091.2:p.Ile213Thr
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2976T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.346T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.716T>C
  hgvsp: ENSP00000383925.1:p.Ile239Thr
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*328T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.716T>C
  hgvsp: ENSP00000338746.5:p.Ile239Thr
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.716T>C
  hgvsp: ENSP00000427620.1:p.Ile239Thr
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*248T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.533T>C
  hgvsp: ENSP00000424509.1:p.Ile178Thr
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3356T>C
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile178Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

1-16782367-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782367
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782367
    reference: chr 1
allele count: 49
allele frequency: 4.040703907113288e-4
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*254G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.539G>A
  hgvsp: ENSP00000424509.1:p.Gly180Glu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3362G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.722G>A
  hgvsp: ENSP00000383925.1:p.Gly241Glu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.644G>A
  hgvsp: ENSP00000407091.2:p.Gly215Glu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.722G>A
  hgvsp: ENSP00000427620.1:p.Gly241Glu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.722G>A
  hgvsp: ENSP00000338746.5:p.Gly241Glu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*334G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.352G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2970G>A
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16122
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly180Glu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

1-16782385-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782385
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782385
    reference: chr 1
allele count: 7
allele frequency: 5.778247375024764e-5
allele num: 121144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.740C>T
  hgvsp: ENSP00000383925.1:p.Thr247Ile
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.662C>T
  hgvsp: ENSP00000407091.2:p.Thr221Ile
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*272C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.740C>T
  hgvsp: ENSP00000338746.5:p.Thr247Ile
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.557C>T
  hgvsp: ENSP00000424509.1:p.Thr186Ile
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*352C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3380C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2952C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.370C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.740C>T
  hgvsp: ENSP00000427620.1:p.Thr247Ile
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr186Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

1-16782386-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782386
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782386
    reference: chr 1
allele count: 4
allele frequency: 3.303328103063837e-5
allele num: 121090
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2951A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.558A>G
  hgvsp: ENST00000504551.2:c.558A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.741A>G
  hgvsp: ENST00000492095.1:c.741A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.741A>G
  hgvsp: ENST00000337132.5:c.741A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*273A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*353A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.663A>G
  hgvsp: ENST00000457722.2:c.663A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.741A>G
  hgvsp: ENST00000406746.1:c.741A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.371A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3381A>G
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.741A>G
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

1-16782401-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782401
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782401
    reference: chr 1
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+13A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+13A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+13A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+13A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+13A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+13A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2936A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+13A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+13A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+13A>G
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-16782409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782409
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782409
    reference: chr 1
allele count: 4
allele frequency: 3.332000533120085e-5
allele num: 120048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+21C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+21C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+21C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+21C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+21C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+21C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+21C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+21C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+21C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2928C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30948
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-16782410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782410
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782410
    reference: chr 1
allele count: 1
allele frequency: 8.340144451301897e-6
allele num: 119902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+22G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+22G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+22G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+22G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+22G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2927G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+22G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+22G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+22G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+22G>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

1-16782410-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782410
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782410
    reference: chr 1
allele count: 1
allele frequency: 8.340144451301897e-6
allele num: 119902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+22G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+22G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+22G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+22G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+22G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+22G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2927G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+22G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+22G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+22G>C
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14874
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-16782411-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782411
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782411
    reference: chr 1
allele count: 1
allele frequency: 8.335278231587371e-6
allele num: 119972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+23G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+23G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+23G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+23G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+23G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2926G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+23G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+23G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+23G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+23G>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36816
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

1-16782416-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782416
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782416
    reference: chr 1
allele count: 1
allele frequency: 8.359806052499582e-6
allele num: 119620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+28G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+28G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+28G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+28G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+28G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+28G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+28G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+28G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+28G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2921G>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

1-16782418-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782418
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782418
    reference: chr 1
allele count: 2
allele frequency: 1.673584147810952e-5
allele num: 119504
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+30T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+30T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+30T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+30T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+30T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+30T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+30T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+30T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2919T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+30T>C
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25794
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-16782422-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782422
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782422
    reference: chr 1
allele count: 2
allele frequency: 1.677261367638919e-5
allele num: 119242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+34G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+34G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2915G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+34G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+34G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+34G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+34G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+34G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+34G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+34G>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9866
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3794
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

1-16782424-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782424
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782424
    reference: chr 1
allele count: 2
allele frequency: 1.680220444922374e-5
allele num: 119032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+36C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+36C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+36C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+36C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+36C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+36C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+36C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+36C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+36C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2913C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20955
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4713
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

1-16782429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782429
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782429
    reference: chr 1
allele count: 1
allele frequency: 8.417083312290625e-6
allele num: 118806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+41C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+41C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+41C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+41C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+41C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+41C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+41C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+41C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2908C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+41C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11705
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-16782431-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782431
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782431
    reference: chr 1
allele count: 4
allele frequency: 3.38409475465313e-5
allele num: 118200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+43G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+43G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+43G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+43G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+43G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+43G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2906G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+43G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+43G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+43G>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11270
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20504
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14048
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-16782437-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782437
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782437
    reference: chr 1
allele count: 2
allele frequency: 1.696698225253656e-5
allele num: 117876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+49C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+49C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+49C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+49C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+49C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+49C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+49C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+49C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+49C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2900C>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5941
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

1-16782439-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16782439
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16782439
    reference: chr 1
allele count: 1
allele frequency: 8.485218748939348e-6
allele num: 117852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*355+51A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.560+51A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.743+51A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.665+51A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.743+51A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.373+51A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*275+51A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3383+51A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.743+51A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-2898A>G
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21671
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

1-16785287-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785287
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785287
    reference: chr 1
allele count: 20
allele frequency: 1.66514028806927e-4
allele num: 120110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.744-50T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.374-50T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*356-50T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*276-50T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3384-50T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.561-50T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.744-50T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.666-50T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-50T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.744-50T>C
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31468
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9781
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

1-16785288-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785288
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785288
    reference: chr 1
allele count: 1
allele frequency: 8.326533331112925e-6
allele num: 120098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*356-49A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.744-49A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-49A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.374-49A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.744-49A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.666-49A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.561-49A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.744-49A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*276-49A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3384-49A>G
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

1-16785294-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785294
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785294
    reference: chr 1
allele count: 5
allele frequency: 4.161880504086967e-5
allele num: 120138
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-43A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.744-43A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.561-43A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.666-43A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.744-43A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.374-43A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.744-43A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*276-43A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*356-43A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3384-43A>G
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41413
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

1-16785306-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785306
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785305
    reference: chr 1
allele count: 1
allele frequency: 8.311722853913159e-6
allele num: 120312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.374-26delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-26delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.744-26delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.666-26delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.744-26delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.744-26delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3384-26delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*356-26delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*276-26delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.561-26delC
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: TC
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

1-16785312-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785312
    reference: chr 1
allele count: 3
allele frequency: 2.490453262493774e-5
allele num: 120460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.666-25A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.744-25A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.374-25A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*356-25A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.744-25A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*276-25A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3384-25A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.744-25A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-25A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.561-25A>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

1-16785313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785313
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785313
    reference: chr 1
allele count: 1
allele frequency: 8.299168423323983e-6
allele num: 120494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.744-24C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.744-24C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.666-24C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.744-24C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3384-24C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.561-24C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*276-24C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-24C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.374-24C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*356-24C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

1-16785318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785318
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785318
    reference: chr 1
allele count: 1
allele frequency: 8.28953694646617e-6
allele num: 120634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.744-19C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-19C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*356-19C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.744-19C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.561-19C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3384-19C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.666-19C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.374-19C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.744-19C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*276-19C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-16785320-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785320
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785320
    reference: chr 1
allele count: 1
allele frequency: 8.286377195889957e-6
allele num: 120680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.561-17C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-17C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.374-17C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*276-17C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3384-17C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.744-17C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.666-17C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.744-17C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.744-17C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*356-17C>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

1-16785327-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785327
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785327
    reference: chr 1
allele count: 195
allele frequency: 1.613143396039113e-3
allele num: 120882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*276-10C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-10C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*356-10C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3384-10C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.561-10C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.374-10C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.744-10C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.666-10C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.744-10C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.744-10C>G
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13318
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 31911
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 11541
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 2
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP

1-16785329-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785329
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785328
    reference: chr 1
allele count: 3
allele frequency: 2.481266438390154e-5
allele num: 120906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.744-5delT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*276-5delT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3384-5delT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.561-5delT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.744-5delT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.374-5delT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.744-5delT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.666-5delT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-5delT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*356-5delT
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.668-5delT
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: CT
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

1-16785336-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785336
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785336
    reference: chr 1
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.744-1G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.744-1G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*276-1G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3384-1G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.666-1G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.744-1G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.374-1G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.561-1G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*356-1G>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.668-1G>C
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42834
  bin: 6.25e1
  variant carriers: 0
hgvs: c.668-1G>C
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

1-16785339-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785339
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785339
    reference: chr 1
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.670C>G
  hgvsp: ENSP00000391942.2:p.Gln224Glu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.746C>G
  hgvsp: ENSP00000383925.1:p.Ser249Ter
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.746C>G
  hgvsp: ENSP00000427620.1:p.Ser249Ter
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.376C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.668C>G
  hgvsp: ENSP00000407091.2:p.Ser223Ter
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*278C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.746C>G
  hgvsp: ENSP00000338746.5:p.Ser249Ter
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.563C>G
  hgvsp: ENSP00000424509.1:p.Ser188Ter
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*358C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3386C>G
  variant of: http://identifiers.org/hgnc/25528
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser223Ter
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/1-16785342-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785342
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785342
    reference: chr 1
allele count: 10
allele frequency: 8.254911672445105e-5
allele num: 121140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.671C>A
  hgvsp: ENSP00000407091.2:p.Thr224Asn
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.749C>A
  hgvsp: ENSP00000427620.1:p.Thr250Asn
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.566C>A
  hgvsp: ENSP00000424509.1:p.Thr189Asn
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.673C>A
  hgvsp: ENSP00000391942.2:p.Leu225Ile
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*361C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*281C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.749C>A
  hgvsp: ENSP00000383925.1:p.Thr250Asn
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.749C>A
  hgvsp: ENSP00000338746.5:p.Thr250Asn
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.379C>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3389C>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu225Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

1-16785343-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785343
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785343
    reference: chr 1
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.750T>A
  hgvsp: ENST00000337132.5:c.750T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.750T>A
  hgvsp: ENST00000492095.1:c.750T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.380T>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.567T>A
  hgvsp: ENST00000504551.2:c.567T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.750T>A
  hgvsp: ENST00000406746.1:c.750T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3390T>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.672T>A
  hgvsp: ENST00000457722.2:c.672T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*282T>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*362T>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.674T>A
  hgvsp: ENSP00000391942.2:p.Leu225His
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu225His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-16785351-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785351
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785351
    reference: chr 1
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3398A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*290A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.682A>G
  hgvsp: ENSP00000391942.2:p.Arg228Gly
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*370A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.758A>G
  hgvsp: ENSP00000427620.1:p.Gln253Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.758A>G
  hgvsp: ENSP00000338746.5:p.Gln253Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.388A>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.758A>G
  hgvsp: ENSP00000383925.1:p.Gln253Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.575A>G
  hgvsp: ENSP00000424509.1:p.Gln192Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.680A>G
  hgvsp: ENSP00000407091.2:p.Gln227Arg
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg228Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

1-16785378-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785378
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785378
    reference: chr 1
allele count: 317
allele frequency: 2.612407700421941e-3
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*397A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*317A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.707A>T
  hgvsp: ENSP00000407091.2:p.Gln236Leu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.709A>T
  hgvsp: ENSP00000391942.2:p.Ser237Cys
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.415A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.785A>T
  hgvsp: ENSP00000383925.1:p.Gln262Leu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3425A>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.785A>T
  hgvsp: ENSP00000427620.1:p.Gln262Leu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.785A>T
  hgvsp: ENSP00000338746.5:p.Gln262Leu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.602A>T
  hgvsp: ENSP00000424509.1:p.Gln201Leu
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11576
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 32311
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13482
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser237Cys
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

1-16785386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785386
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785386
    reference: chr 1
allele count: 2
allele frequency: 1.648261084555794e-5
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*1C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.717C>T
  hgvsp: ENST00000443980.2:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*405C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.423C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3433C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*1C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*1C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*325C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*1C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*1C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp239Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-16785389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785389
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785389
    reference: chr 1
allele count: 3
allele frequency: 2.472758444470088e-5
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.720G>A
  hgvsp: ENST00000443980.2:c.720G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3436G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*4G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*328G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.426G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*4G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*408G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*4G>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu240Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-16785391-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785391
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785391
    reference: chr 1
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.722G>A
  hgvsp: ENSP00000391942.2:p.Ser241Asn
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*330G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*6G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*6G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*6G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3438G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.428G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*410G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser241Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

1-16785394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785394
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785394
    reference: chr 1
allele count: 13
allele frequency: 1.071705330497436e-4
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.431C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*413C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*9C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3441C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.725C>T
  hgvsp: ENSP00000391942.2:p.Thr242Met
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*9C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*9C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*333C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32465
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13531
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 9.75e1
  variant carriers: 13
hgvs: p.Thr242Met
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

1-16785395-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785395
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785395
    reference: chr 1
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*10G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.432G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*334G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*414G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.726G>A
  hgvsp: ENST00000443980.2:c.726G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*10G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*10G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3442G>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32462
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr242Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-16785401-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785401
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785401
    reference: chr 1
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*16T>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*16T>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.732T>A
  hgvsp: ENSP00000391942.2:p.Phe244Leu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*420T>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*16T>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*340T>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*16T>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3448T>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*16T>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.438T>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe244Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

1-16785405-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785405
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785403
    reference: chr 1
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*21_*22delAT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*21_*22delAT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*425_*426delAT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*345_*346delAT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.737_738delAT
  hgvsp: ENSP00000391942.2:p.His246ArgfsTer80
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*21_*22delAT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*21_*22delAT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.443_444delAT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*21_*22delAT
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3453_3454delAT
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His246ArgfsTer80
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: CAT
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

1-16785424-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785424
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785424
    reference: chr 1
allele count: 14
allele frequency: 1.171410880733638e-4
allele num: 119514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*363C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.461C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*39C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.755C>T
  hgvsp: ENSP00000391942.2:p.Ala252Val
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*39C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*443C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3471C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*39C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12625
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31331
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala252Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

1-16785425-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785425
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785425
    reference: chr 1
allele count: 1
allele frequency: 8.384197464618687e-6
allele num: 119272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*444G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*364G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*40G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.756G>A
  hgvsp: ENST00000443980.2:c.756G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.462G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3472G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*40G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*40G>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9682
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala252Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

1-16785427-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785427
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785426
    reference: chr 1
allele count: 9
allele frequency: 7.571678557006327e-5
allele num: 118864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.467delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*45delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.761delC
  hgvsp: ENSP00000391942.2:p.Pro254LeufsTer74
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*45delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*369delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3477delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*45delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*45delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*449delC
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*45delC
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30931
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro254LeufsTer74
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: TC
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

1-16785429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785429
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785429
    reference: chr 1
allele count: 1
allele frequency: 8.452085129401424e-6
allele num: 118314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.466C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*448C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*44C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*44C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*44C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.760C>T
  hgvsp: ENSP00000391942.2:p.Pro254Ser
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*44C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*44C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3476C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*368C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12068
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro254Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

1-16785430-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785430
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785430
    reference: chr 1
allele count: 1
allele frequency: 8.481332586976066e-6
allele num: 117906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*45C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*369C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*45C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*45C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*45C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3477C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.761C>G
  hgvsp: ENSP00000391942.2:p.Pro254Arg
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*45C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*449C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.467C>G
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11933
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro254Arg
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

1-16785434-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785434
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785434
    reference: chr 1
allele count: 1
allele frequency: 8.53344256139812e-6
allele num: 117186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*49T>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*49T>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.765T>G
  hgvsp: ENSP00000391942.2:p.His255Gln
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*49T>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*49T>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.471T>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000421335
  ensembl transcript: ENST00000459640
  gene symbol: NECAP2
  hgvsc: ENST00000459640.1:c.*373T>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*453T>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*49T>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3481T>G
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His255Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-16785455-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785455
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785455
    reference: chr 1
allele count: 13
allele frequency: 1.296680497925311e-4
allele num: 100256
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.786C>T
  hgvsp: ENST00000443980.2:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*70C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*70C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*70C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3502C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*474C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*70C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*70C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.492C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10435
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19842
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp262Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

1-16785456-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785456
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785456
    reference: chr 1
allele count: 1
allele frequency: 1.001021041462292e-5
allele num: 99898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*71G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*71G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3503G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*71G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*71G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*71G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.493G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*475G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.787G>A
  hgvsp: ENSP00000391942.2:p.Glu263Lys
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu263Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

1-16785460-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785460
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785460
    reference: chr 1
allele count: 1
allele frequency: 1.076194575979337e-5
allele num: 92920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*75C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*75C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*479C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*75C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*75C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3507C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.497C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.791C>G
  hgvsp: ENSP00000391942.2:p.Ala264Gly
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*75C>G
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8855
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala264Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

1-16785460-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785460
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785460
    reference: chr 1
allele count: 1
allele frequency: 1.076194575979337e-5
allele num: 92920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.497C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.791C>T
  hgvsp: ENSP00000391942.2:p.Ala264Val
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*479C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3507C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*75C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*75C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*75C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*75C>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*75C>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8855
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala264Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

1-16785461-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785461
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785461
    reference: chr 1
allele count: 1
allele frequency: 1.076101928374656e-5
allele num: 92928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*76C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.792C>G
  hgvsp: ENST00000443980.2:c.792C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*76C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*76C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*76C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*76C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.498C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3508C>G
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*480C>G
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23073
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala264Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

1-16785463-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785463
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785463
    reference: chr 1
allele count: 57
allele frequency: 6.366296602408023e-4
allele num: 89534
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*78T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*78T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.794T>C
  hgvsp: ENSP00000391942.2:p.Leu265Pro
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*78T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*482T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3510T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*78T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*78T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.500T>C
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15139
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13780
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14359
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26399
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu265Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-16785476-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785476
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785476
    reference: chr 1
allele count: 1
allele frequency: 1.30578987229375e-5
allele num: 76582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*91T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.807T>C
  hgvsp: ENST00000443980.2:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*91T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.513T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*91T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*91T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*495T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*91T>C
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3523T>C
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6816
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro269Pro
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

1-16785484-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785484
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785484
    reference: chr 1
allele count: 1
allele frequency: 1.446926727630513e-5
allele num: 69112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*99G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.521G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*99G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*99G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*99G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*99G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.815G>A
  hgvsp: ENSP00000391942.2:p.Gly272Glu
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3531G>A
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*503G>A
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6309
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5421
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9906
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly272Glu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

1-16785485-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785485
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785485
    reference: chr 1
allele count: 1
allele frequency: 1.467997651203758e-5
allele num: 68120
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.816G>T
  hgvsp: ENST00000443980.2:c.816G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*504G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3532G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.522G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*100G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*100G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*100G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*100G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*100G>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20553
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5740
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly272Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ

1-16785486-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16785486
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 16785486
    reference: chr 1
allele count: 1
allele frequency: 1.511487303506651e-5
allele num: 66160
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000391942
  ensembl transcript: ENST00000443980
  gene symbol: NECAP2
  hgvsc: ENST00000443980.2:c.817G>T
  hgvsp: ENSP00000391942.2:p.Ala273Ser
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000383925
  ensembl transcript: ENST00000406746
  gene symbol: NECAP2
  hgvsc: ENST00000406746.1:c.*101G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000407091
  ensembl transcript: ENST00000457722
  gene symbol: NECAP2
  hgvsc: ENST00000457722.2:c.*101G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000424509
  ensembl transcript: ENST00000504551
  gene symbol: NECAP2
  hgvsc: ENST00000504551.2:c.*101G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000427620
  ensembl transcript: ENST00000492095
  gene symbol: NECAP2
  hgvsc: ENST00000492095.1:c.*101G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000338746
  ensembl transcript: ENST00000337132
  gene symbol: NECAP2
  hgvsc: ENST00000337132.5:c.*101G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157191
  ensembl protein: ENSP00000423213
  ensembl transcript: ENST00000513161
  gene symbol: NECAP2
  hgvsc: ENST00000513161.1:c.*505G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000509727
  gene symbol: NECAP2
  hgvsc: ENST00000509727.1:n.523G>T
  variant of: http://identifiers.org/hgnc/25528
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157191
  ensembl transcript: ENST00000496239
  gene symbol: NECAP2
  hgvsc: ENST00000496239.1:n.3533G>T
  variant of: http://identifiers.org/hgnc/25528
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala273Ser
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6362
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45857
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926040061633282e-4
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.336e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.187e0

FS
type: SiteQuality
SIO_000300: 5.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.04e-1

DP
type: SiteQuality
SIO_000300: 1.505918e6

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6360
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 523
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.99e-1

MQ
type: SiteQuality
SIO_000300: 5.873e1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

DP
type: SiteQuality
SIO_000300: 1.50588e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.488e1

FS
type: SiteQuality
SIO_000300: 1.462e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.688e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.101e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.507091e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e0

FS
type: SiteQuality
SIO_000300: 4.768e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.991e0

VQSLOD
type: SiteQuality
SIO_000300: -1.89e-2

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6369
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 523
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.119e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

FS
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 1.507615e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.222e0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6369
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.350337584396099e-4
allele num: 66650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 5.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.222e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 1.507615e6

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

QD
type: SiteQuality
SIO_000300: 1.119e1

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6364
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1241
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.000420029402058e-5
allele num: 66662
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele frequency: 2.594706798131811e-4
allele num: 11562
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -2.0e-4

ReadPosRankSum
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ClippingRankSum
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SIO_000300: -9.0e-2

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.929e1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.251e1

FS
type: SiteQuality
SIO_000300: 1.125e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

South Asian
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MQ
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MQRankSum
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SIO_000300: -7.199999999999999e-2

ClippingRankSum
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VQSLOD
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FS
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SIO_000300: 4.757e0

BaseQRankSum
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SIO_000300: -1.999e0

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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SIO_000300: 1.508973e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.71e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele num: 16508
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

East Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.39e-1

QD
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VQSLOD
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MQ
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BaseQRankSum
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SIO_000300: -2.7e-2

ReadPosRankSum
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SIO_000300: 1.04e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

FS
type: SiteQuality
SIO_000300: 4.727e0

DP
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SIO_000300: 1.511194e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
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allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.510782e6

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 3.01e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

QD
type: SiteQuality
SIO_000300: 1.171e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507340749449821e-5
allele num: 66342
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
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allele count: 5
allele frequency: 7.768800497203232e-4
allele num: 6436
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e0

QD
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MQ
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SIO_000300: 5.82e1

BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: -1.8e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.498830304120928e-5
allele num: 66684
num of homozygotes: 0

South Asian
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East Asian
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InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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MQRankSum
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BaseQRankSum
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DP
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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Other
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East Asian
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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FS
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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QD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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DP
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1585
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variant carriers: 1

GenotypeQuality
all individuals: 2102
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.96e-1

QD
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SIO_000300: 1.079e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.512e-1

DP
type: SiteQuality
SIO_000300: 1.513468e6

MQ
type: SiteQuality
SIO_000300: 5.88e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 49

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 660
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 47
allele frequency: 2.848484848484848e-3
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 1.855e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.63e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.06e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.04e1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

DP
type: SiteQuality
SIO_000300: 1.515408e6

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
all individuals: 2076
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.248088360237893e-4
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.593e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.36e-1

FS
type: SiteQuality
SIO_000300: 1.378e0

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

DP
type: SiteQuality
SIO_000300: 1.508255e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeDepth
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6323
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variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.005645306588193e-5
allele num: 66604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.35e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

DP
type: SiteQuality
SIO_000300: 1.505928e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1573
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variant carriers: 1

GenotypeQuality
all individuals: 491
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505253334136135e-5
allele num: 66434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.482781e6

QD
type: SiteQuality
SIO_000300: 1.306e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170411985018727e-4
allele num: 8544
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.742790335151988e-5
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.025260928755105e-5
allele num: 66110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.909e1

FS
type: SiteQuality
SIO_000300: 2.339e0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.448779e6

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

QD
type: SiteQuality
SIO_000300: 1.105e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.126700159294204e-5
allele num: 16322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66052
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.117e1

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 1.437494e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1989
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.754194303550527e-5
allele num: 10252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.884e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele num: 6486
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South Asian
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Other
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QD
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65890
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele num: 65836
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East Asian
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Other
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FS
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VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65704
num of homozygotes: 0

Latino
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African
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Other
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South Asian
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allele num: 16264
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European (Finnish)
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East Asian
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 65618
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East Asian
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Other
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European (Finnish)
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African
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South Asian
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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South Asian
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VQSLOD
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MQRankSum
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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MQRankSum
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QD
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ReadPosRankSum
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FS
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MQ
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InbreedingCoeff
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
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MQ
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ClippingRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537657225451303e-5
allele num: 65034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

DP
type: SiteQuality
SIO_000300: 1.316197e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.025e0

QD
type: SiteQuality
SIO_000300: 1.04e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.608695652173913e-4
allele num: 11500
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.033980582524272e-4
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.817300702689605e-4
allele num: 66032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.69e-2

QD
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SIO_000300: 1.523e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

DP
type: SiteQuality
SIO_000300: 1.677893e6

VQSLOD
type: SiteQuality
SIO_000300: 4.96e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171783454417624e-4
allele num: 8534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.67759e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.583e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.571168988491823e-5
allele num: 66040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.23e1

DP
type: SiteQuality
SIO_000300: 1.679325e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

VQSLOD
type: SiteQuality
SIO_000300: -2.258e0

FS
type: SiteQuality
SIO_000300: 1.9665e1

MQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.056e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.864e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.87e-1

FS
type: SiteQuality
SIO_000300: 1.446e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.686886e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 1.083e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.8405825624877e-5
allele num: 10162
num of homozygotes: 0

Other
type: Population
allele count: 0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019597185735423e-5
allele num: 66234
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

QD
type: SiteQuality
SIO_000300: 1.31e1

FS
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.71e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
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allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.509388395822013e-5
allele num: 66252
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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DP
type: SiteQuality
SIO_000300: 1.690436e6

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.223e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507204437209863e-5
allele num: 66348
num of homozygotes: 0

South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6592
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Other
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African
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East Asian
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MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
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QD
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FS
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VQSLOD
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506750241080039e-5
allele num: 66368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

DP
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MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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SIO_000300: 9.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.46e-1

FS
type: SiteQuality
SIO_000300: 3.697e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.73e0

QD
type: SiteQuality
SIO_000300: 9.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 192

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00960062599693e-5
allele num: 66454
num of homozygotes: 0

Latino
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allele count: 11
allele frequency: 9.525458953931416e-4
allele num: 11548
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.212709192335678e-4
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 179
allele frequency: 1.740906438436102e-2
allele num: 10282
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

QD
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SIO_000300: 1.405e1

VQSLOD
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SIO_000300: 4.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 5.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

DP
type: SiteQuality
SIO_000300: 1.701401e6

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.513178481165002e-5
allele num: 66472
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.007e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
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SIO_000300: -5.36e-1

ReadPosRankSum
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MQRankSum
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SIO_000300: 1.23e0

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 3.37e-1

DP
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SIO_000300: 1.693242e6

QD
type: SiteQuality
SIO_000300: 1.44e1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

VQSLOD
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QD
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FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.69468e6

MQ
type: SiteQuality
SIO_000300: 5.934e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.926e1

QD
type: SiteQuality
SIO_000300: 1.198e1

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -6.56e-1

FS
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SIO_000300: 2.907e0

DP
type: SiteQuality
SIO_000300: 1.695188e6

VQSLOD
type: SiteQuality
SIO_000300: 2.52e-1

ReadPosRankSum
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SIO_000300: 2.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.158e0

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.351676078337138e-4
allele num: 66584
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

FS
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SIO_000300: 3.232e0

QD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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DP
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SIO_000300: 1.695886e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
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VQSLOD
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FS
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
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allele num: 16510
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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VQSLOD
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SIO_000300: 1.75e0

ClippingRankSum
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SIO_000300: 2.21e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

QD
type: SiteQuality
SIO_000300: 1.413e1

DP
type: SiteQuality
SIO_000300: 1.69514e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.718e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2454
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 316

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 296
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.189413596263622e-4
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 208
allele frequency: 3.118253777884385e-3
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.885725278953444e-4
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 97
allele frequency: 1.46658602963411e-2
allele num: 6614
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.289e1

DP
type: SiteQuality
SIO_000300: 1.703507e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.76e-1

FS
type: SiteQuality
SIO_000300: 5.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.124e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.56e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

DP
type: SiteQuality
SIO_000300: 1.687931e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.873e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 893
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variant carriers: 3

GenotypeQuality
all individuals: 2460
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498155756139982e-5
allele num: 66694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.084e0

VQSLOD
type: SiteQuality
SIO_000300: -1.964e0

QD
type: SiteQuality
SIO_000300: 1.074e1

FS
type: SiteQuality
SIO_000300: 1.5015e1

DP
type: SiteQuality
SIO_000300: 1.687522e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 10133
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.828e0

MQ
type: SiteQuality
SIO_000300: 5.792e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

QD
type: SiteQuality
SIO_000300: 1.132e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.64e0

FS
type: SiteQuality
SIO_000300: 2.535e0

MQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-1

DP
type: SiteQuality
SIO_000300: 1.687266e6

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.596053997923157e-4
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.663842895648826e-4
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.686891e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.026e0

BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.24e0

DP
type: SiteQuality
SIO_000300: 1.686486e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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MQRankSum
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SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

DP
type: SiteQuality
SIO_000300: 1.684584e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2207
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

FS
type: SiteQuality
SIO_000300: 2.262e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.99e0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.682153e6

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.134e1

GenotypeQuality
all individuals: 2100
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variant carriers: 0

GenotypeQuality
all individuals: 41285
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
all individuals: 273
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.761811792268645e-5
allele num: 10244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.095145216834791e-5
allele num: 65626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.536417322834646e-4
allele num: 16256
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

DP
type: SiteQuality
SIO_000300: 1.642449e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 5.209e0

MQRankSum
type: SiteQuality
SIO_000300: -1.12e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.778994719342852e-5
allele num: 10226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65496
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.296e0

FS
type: SiteQuality
SIO_000300: 6.995e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.636252e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

VQSLOD
type: SiteQuality
SIO_000300: -2.175e-1

QD
type: SiteQuality
SIO_000300: 1.153e1

GenotypeQuality
all individuals: 2472
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 288
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.564486212439718e-4
allele num: 16174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

MQ
type: SiteQuality
SIO_000300: 5.997e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

FS
type: SiteQuality
SIO_000300: 4.195e0

DP
type: SiteQuality
SIO_000300: 1.625087e6

GenotypeQuality
all individuals: 755
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 198
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GenotypeQuality
all individuals: 2232
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.185677021579322e-4
allele num: 8434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16094
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.468e0

QD
type: SiteQuality
SIO_000300: 1.116e1

DP
type: SiteQuality
SIO_000300: 1.613676e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.25e-1

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1938
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GenotypeQuality
all individuals: 236
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545833977430824e-5
allele num: 64690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16068
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.161e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

FS
type: SiteQuality
SIO_000300: 1.954e0

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

QD
type: SiteQuality
SIO_000300: 2.937e1

DP
type: SiteQuality
SIO_000300: 1.604262e6

VQSLOD
type: SiteQuality
SIO_000300: -9.044e-1

GenotypeQuality
all individuals: 790
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2154
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.201056930098487e-4
allele num: 8326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11170
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.264e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.585483e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.079e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.643355366468247e-4
allele num: 54766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6844
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.396570674873599e-4
allele num: 9098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.186e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 7.012622720897616e-5
allele num: 14260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6802
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.250614e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.904e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.823e0

FS
type: SiteQuality
SIO_000300: 1.695e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.48e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50544
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13662
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.388888888888889e-3
allele num: 720
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

VQSLOD
type: SiteQuality
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FS
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QD
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ClippingRankSum
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.128413e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13662
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.978474200696423e-5
allele num: 50544
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

DP
type: SiteQuality
SIO_000300: 1.128413e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

QD
type: SiteQuality
SIO_000300: 1.1e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.313149041977475e-5
allele num: 13674
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.126892e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

QD
type: SiteQuality
SIO_000300: 1.503e1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.24e-2

MQ
type: SiteQuality
SIO_000300: 5.901e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 56

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

African
type: Population
allele count: 57
allele frequency: 7.071960297766749e-3
allele num: 8060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5242
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.073117e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

FS
type: SiteQuality
SIO_000300: 1.254e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

QD
type: SiteQuality
SIO_000300: 1.371e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41006
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.415628539071348e-4
allele num: 7064
num of homozygotes: 0

South Asian
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allele count: 0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.168e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.742160278745645e-3
allele num: 574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
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SIO_000300: 8.12036e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.561036528254761e-4
allele num: 6406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 4120
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DP
type: SiteQuality
SIO_000300: 8.02555e5

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0