9-87367008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87367008
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87367008
    reference: chr 9
allele count: 1
allele frequency: 8.345573507811457e-6
allele num: 119824
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1396+8G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1396+8G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.928+8G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1396+8G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1396+8G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1396+8G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1396+8G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1396+8G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1396+8G>A
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 21137
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1396+8G>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

9-87367010-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87367010
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87367010
    reference: chr 9
allele count: 1
allele frequency: 8.357570287166115e-6
allele num: 119652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1396+10G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1396+10G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1396+10G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1396+10G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1396+10G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.928+10G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1396+10G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1396+10G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1396+10G>T
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20966
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

9-87367011-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87367011
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87367011
    reference: chr 9
allele count: 1
allele frequency: 8.38335401227323e-6
allele num: 119284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1396+11T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1396+11T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1396+11T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.928+11T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1396+11T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1396+11T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1396+11T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1396+11T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1396+11T>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

9-87367012-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87367012
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87367012
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 118968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1396+12T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.928+12T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1396+12T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1396+12T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1396+12T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1396+12T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1396+12T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1396+12T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1396+12T>G
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14527
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5043
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

9-87367013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87367013
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87367013
    reference: chr 9
allele count: 1
allele frequency: 8.384900471231407e-6
allele num: 119262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.928+13G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1396+13G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1396+13G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1396+13G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1396+13G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1396+13G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1396+13G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1396+13G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1396+13G>A
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14498
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

9-87367027-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87367027
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87367027
    reference: chr 9
allele count: 1
allele frequency: 8.554759012438619e-6
allele num: 116894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1396+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1396+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.928+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1396+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1396+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1396+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1396+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1396+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1396+27T>A
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2462
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6766
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

9-87367037-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87367037
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87367037
    reference: chr 9
allele count: 1
allele frequency: 8.692930908585139e-6
allele num: 115036
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.928+37A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1396+37A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1396+37A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1396+37A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1396+37A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1396+37A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1396+37A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1396+37A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1396+37A>G
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11995
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7632
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5008
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/9-87367039-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87367039
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87367039
    reference: chr 9
allele count: 1
allele frequency: 8.711104916547614e-6
allele num: 114796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1396+39C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1396+39C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1396+39C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1396+39C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1396+39C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.928+39C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1396+39C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1396+39C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1396+39C>A
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

9-87367040-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87367040
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87367040
    reference: chr 9
allele count: 1
allele frequency: 8.739425295392576e-6
allele num: 114424
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1396+40A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.928+40A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1396+40A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1396+40A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1396+40A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1396+40A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1396+40A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1396+40A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1396+40A>G
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13988
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3614
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

9-87367043-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87367043
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87367043
    reference: chr 9
allele count: 1
allele frequency: 8.72783130847647e-6
allele num: 114576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1396+43T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1396+43T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.928+43T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1396+43T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1396+43T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1396+43T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1396+43T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1396+43T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1396+43T>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14909
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6451
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

9-87425406-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425406
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425406
    reference: chr 9
allele count: 1
allele frequency: 1.080263584314573e-5
allele num: 92570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1397-51A>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56752A>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.929-51A>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56752A>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56752A>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1397-51A>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50549A>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50549A>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50549A>T
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10433
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11972
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3932
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

9-87425411-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425411
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425411
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 93214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.929-46T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56747T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50544T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50544T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56747T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1397-46T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1397-46T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50544T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56747T>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11905
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9784
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

9-87425419-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425419
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425419
    reference: chr 9
allele count: 2
allele frequency: 2.131151034673827e-5
allele num: 93846
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.929-38T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50536T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1397-38T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56739T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50536T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50536T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56739T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1397-38T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56739T>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9770
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7083
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD

9-87425423-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425423
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425423
    reference: chr 9
allele count: 1
allele frequency: 1.060760353021045e-5
allele num: 94272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56735G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50532G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56735G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.929-34G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50532G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50532G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1397-34G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1397-34G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56735G>A
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15045
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11628
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

9-87425427-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425427
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425427
    reference: chr 9
allele count: 3
allele frequency: 3.145115635418196e-5
allele num: 95386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1397-30G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56731G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50528G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.929-30G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56731G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50528G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50528G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1397-30G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56731G>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13291
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10521
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/9-87425432-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425432
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425432
    reference: chr 9
allele count: 4
allele frequency: 4.136761329555091e-5
allele num: 96694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50523A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56726A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50523A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56726A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.929-25A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50523A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56726A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1397-25A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1397-25A>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18184
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11136
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3067
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

9-87425438-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425438
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425438
    reference: chr 9
allele count: 1
allele frequency: 1.01044803265768e-5
allele num: 98966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1397-19T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56720T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56720T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.929-19T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50517T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50517T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50517T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1397-19T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56720T>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3031
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10543
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

9-87425446-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425446
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425447
    reference: chr 9
allele count: 1
allele frequency: 9.664450286067728e-6
allele num: 103472
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56709dupT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56709dupT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1397-8dupT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50506dupT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50506dupT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1397-8dupT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.929-8dupT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50506dupT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56709dupT
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26035
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24649
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

9-87425446-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425446
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425445
    reference: chr 9
allele count: 1
allele frequency: 9.664450286067728e-6
allele num: 103472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56709delT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50506delT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56709delT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56709delT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1397-8delT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.929-8delT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50506delT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1397-8delT
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50506delT
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: GT
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

9-87425450-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425450
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425450
    reference: chr 9
allele count: 1
allele frequency: 9.406806765375426e-6
allele num: 106306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50505C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56708C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56708C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1397-7C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.929-7C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50505C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56708C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1397-7C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50505C>T
  variant of: http://identifiers.org/hgnc/8032
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28663
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1397-7C>T
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

9-87425451-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425451
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425451
    reference: chr 9
allele count: 1
allele frequency: 9.318622334874013e-6
allele num: 107312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50504T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.929-6T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1397-6T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56707T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56707T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50504T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56707T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1397-6T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50504T>C
  variant of: http://identifiers.org/hgnc/8032
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29365
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1397-6T>C
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

9-87425467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425467
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425467
    reference: chr 9
allele count: 1
allele frequency: 8.624109560687859e-6
allele num: 115954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1407G>A
  hgvsp: ENST00000395882.1:c.1407G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.939G>A
  hgvsp: ENST00000395866.2:c.939G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50488G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50488G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56691G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50488G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1407G>A
  hgvsp: ENST00000359847.3:c.1407G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56691G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56691G>A
  variant of: http://identifiers.org/hgnc/8032
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35056
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu469Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

9-87425481-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425481
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425481
    reference: chr 9
allele count: 14
allele frequency: 1.179165824405364e-4
allele num: 118728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56677C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50474C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1421C>T
  hgvsp: ENSP00000352906.3:p.Pro474Leu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.953C>T
  hgvsp: ENSP00000379207.2:p.Pro318Leu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50474C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56677C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56677C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1421C>T
  hgvsp: ENSP00000379221.1:p.Pro474Leu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50474C>T
  variant of: http://identifiers.org/hgnc/8032
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36157
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4308
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro474Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

9-87425488-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425488
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425488
    reference: chr 9
allele count: 1
allele frequency: 8.378296859814337e-6
allele num: 119356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.960T>A
  hgvsp: ENSP00000379207.2:p.Asp320Glu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56670T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1428T>A
  hgvsp: ENSP00000352906.3:p.Asp476Glu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56670T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50467T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56670T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50467T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50467T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1428T>A
  hgvsp: ENSP00000379221.1:p.Asp476Glu
  variant of: http://identifiers.org/hgnc/8032
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp476Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

9-87425491-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425491
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425491
    reference: chr 9
allele count: 1
allele frequency: 8.371563473194253e-6
allele num: 119452
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50464G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56667G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50464G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.1431G>A
  hgvsp: ENST00000359847.3:c.1431G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56667G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.963G>A
  hgvsp: ENST00000395866.2:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50464G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.1431G>A
  hgvsp: ENST00000395882.1:c.1431G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56667G>A
  variant of: http://identifiers.org/hgnc/8032
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly477Gly
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

9-87425526-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425526
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425526
    reference: chr 9
allele count: 1
allele frequency: 8.336112037345782e-6
allele num: 119960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50429T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.*32T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.*32T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50429T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56632T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50429T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56632T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.*32T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56632T>C
  variant of: http://identifiers.org/hgnc/8032
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP

9-87425537-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87425537
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87425537
    reference: chr 9
allele count: 8
allele frequency: 6.676347370353679e-5
allele num: 119826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379207
  ensembl transcript: ENST00000395866
  gene symbol: NTRK2
  hgvsc: ENST00000395866.2:c.*43T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000352906
  ensembl transcript: ENST00000359847
  gene symbol: NTRK2
  hgvsc: ENST00000359847.3:c.*43T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50418T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-56621T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000379221
  ensembl transcript: ENST00000395882
  gene symbol: NTRK2
  hgvsc: ENST00000395882.1:c.*43T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50418T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-56621T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-56621T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50418T>C
  variant of: http://identifiers.org/hgnc/8032
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8740
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29826
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

9-87475904-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87475904
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87475904
    reference: chr 9
allele count: 1
allele frequency: 8.784258608573437e-6
allele num: 113840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6254G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6254G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-51G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-51G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6254G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-51G>A
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4976
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11394
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3630
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2981
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

9-87475905-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87475905
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87475905
    reference: chr 9
allele count: 3
allele frequency: 2.627154266498529e-5
allele num: 114192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6253G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6253G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-50G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6253G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-50G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-50G>A
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13468
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11398
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

9-87475921-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87475921
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87475921
    reference: chr 9
allele count: 1
allele frequency: 8.699131826643701e-6
allele num: 114954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6237C>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6237C>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-34C>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-34C>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6237C>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-34C>G
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11393
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

9-87475922-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87475922
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87475922
    reference: chr 9
allele count: 6
allele frequency: 5.212043294706302e-5
allele num: 115118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6236G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-33G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6236G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-33G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6236G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-33G>A
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20456
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9729
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

9-87475925-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87475925
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87475925
    reference: chr 9
allele count: 1
allele frequency: 8.62976578815651e-6
allele num: 115878
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1397-30G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6233G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1397-30G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1397-30G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6233G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6233G>A
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11397
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

9-87475983-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87475983
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87475983
    reference: chr 9
allele count: 2
allele frequency: 1.660605456749531e-5
allele num: 120438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1425A>G
  hgvsp: ENST00000304053.6:c.1425A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6175A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6175A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1425A>G
  hgvsp: ENST00000277120.3:c.1425A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6175A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1425A>G
  hgvsp: ENST00000376214.1:c.1425A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5010
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val475Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

9-87475998-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87475998
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87475998
    reference: chr 9
allele count: 2
allele frequency: 1.661460756296936e-5
allele num: 120376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6160T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1440T>C
  hgvsp: ENST00000304053.6:c.1440T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6160T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6160T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1440T>C
  hgvsp: ENST00000376214.1:c.1440T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1440T>C
  hgvsp: ENST00000277120.3:c.1440T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11419
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly480Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

9-87475999-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87475999
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87475999
    reference: chr 9
allele count: 3
allele frequency: 2.49214972835568e-5
allele num: 120378
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1441G>A
  hgvsp: ENSP00000365387.1:p.Val481Ile
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6159G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6159G>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1441G>A
  hgvsp: ENSP00000306167.6:p.Val481Ile
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1441G>A
  hgvsp: ENSP00000277120.3:p.Val481Ile
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6159G>A
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12878
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36722
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11420
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Val481Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

9-87476003-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87476003
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87476003
    reference: chr 9
allele count: 1
allele frequency: 8.310203267571925e-6
allele num: 120334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6155G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1444+1G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6155G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1444+1G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1444+1G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6155G>T
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36492
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4984
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1444+1G>T
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

9-87476005-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87476005
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87476005
    reference: chr 9
allele count: 1
allele frequency: 8.311308366163002e-6
allele num: 120318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6153A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6153A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1444+3A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6153A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1444+3A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1444+3A>G
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11418
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4989
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1444+3A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

9-87476015-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87476015
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87476015
    reference: chr 9
allele count: 3
allele frequency: 2.496920464760129e-5
allele num: 120148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1444+13C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1444+13C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6143C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6143C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6143C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1444+13C>T
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-87476019-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87476019
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87476019
    reference: chr 9
allele count: 1
allele frequency: 8.326671995736744e-6
allele num: 120096
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6139C>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6139C>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1444+17C>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1444+17C>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6139C>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1444+17C>G
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11417
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4908
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1931
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

9-87476024-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87476024
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87476024
    reference: chr 9
allele count: 1
allele frequency: 8.332361224523806e-6
allele num: 120014
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6134T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1444+22T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6134T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1444+22T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6134T>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1444+22T>G
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4851
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34005
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

9-87476025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87476025
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87476025
    reference: chr 9
allele count: 1
allele frequency: 8.332916687498959e-6
allele num: 120006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1444+23C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6133C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1444+23C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1444+23C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6133C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6133C>T
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11417
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum

9-87476035-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87476035
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87476035
    reference: chr 9
allele count: 1
allele frequency: 8.348081610845828e-6
allele num: 119788
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1444+33G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6123G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6123G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6123G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1444+33G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1444+33G>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4609
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11416
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

9-87476040-G-GCAACAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87476040
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87476046
    reference: chr 9
allele count: 1
allele frequency: 8.355614973262032e-6
allele num: 119680
alternate allele: GCAACAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1444+38_1444+39insCAACAA
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1444+38_1444+39insCAACAA
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1444+38_1444+39insCAACAA
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11414
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2773
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-87476046-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87476046
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87476046
    reference: chr 9
allele count: 2
allele frequency: 1.673500125512509e-5
allele num: 119510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6112A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6112A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6112A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1444+44A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1444+44A>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1444+44A>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10715
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11414
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2823
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

9-87476048-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87476048
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87476048
    reference: chr 9
allele count: 1
allele frequency: 8.40039649871474e-6
allele num: 119042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-6110G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1444+46G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1444+46G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-6110G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1444+46G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-6110G>T
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4046
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

9-87482109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482109
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482109
    reference: chr 9
allele count: 1
allele frequency: 8.533005665915763e-6
allele num: 117192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-49C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1445-49C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1445-49C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-49C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1445-49C>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-49C>T
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6020
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9432
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

9-87482126-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482126
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482126
    reference: chr 9
allele count: 1
allele frequency: 8.471130387638926e-6
allele num: 118048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1445-32A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1445-32A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1445-32A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-32A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-32A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-32A>G
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12844
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9552
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

9-87482141-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482141
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482141
    reference: chr 9
allele count: 1
allele frequency: 8.367640660039494e-6
allele num: 119508
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-17T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1445-17T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-17T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1445-17T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-17T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1445-17T>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22743
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4462
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7744
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9704
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5261
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/9-87482149-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482149
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482149
    reference: chr 9
allele count: 1
allele frequency: 8.313519445321983e-6
allele num: 120286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397-9C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1445-9C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1445-9C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397-9C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1445-9C>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397-9C>A
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7925
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

9-87482158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482158
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482158
    reference: chr 9
allele count: 1
allele frequency: 8.279105194310599e-6
allele num: 120786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397G>A
  hgvsp: ENSP00000365386.1:p.Gly466Asp
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1445G>A
  hgvsp: ENSP00000306167.6:p.Gly482Asp
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397G>A
  hgvsp: ENSP00000365381.1:p.Gly466Asp
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1445G>A
  hgvsp: ENSP00000365387.1:p.Gly482Asp
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397G>A
  hgvsp: ENSP00000314586.4:p.Gly466Asp
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1445G>A
  hgvsp: ENSP00000277120.3:p.Gly482Asp
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5386
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly482Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

9-87482158-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482158
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482158
    reference: chr 9
allele count: 1
allele frequency: 8.279105194310599e-6
allele num: 120786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1397G>T
  hgvsp: ENSP00000314586.4:p.Gly466Val
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1397G>T
  hgvsp: ENSP00000365386.1:p.Gly466Val
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1445G>T
  hgvsp: ENSP00000277120.3:p.Gly482Val
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1397G>T
  hgvsp: ENSP00000365381.1:p.Gly466Val
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1445G>T
  hgvsp: ENSP00000365387.1:p.Gly482Val
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1445G>T
  hgvsp: ENSP00000306167.6:p.Gly482Val
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3770
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8034
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4570
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5386
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly482Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

9-87482165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482165
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482165
    reference: chr 9
allele count: 2
allele frequency: 1.653083827880912e-5
allele num: 120986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1452C>T
  hgvsp: ENST00000277120.3:c.1452C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1404C>T
  hgvsp: ENST00000376213.1:c.1404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1404C>T
  hgvsp: ENST00000376208.1:c.1404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1452C>T
  hgvsp: ENST00000376214.1:c.1452C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1404C>T
  hgvsp: ENST00000323115.4:c.1404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1452C>T
  hgvsp: ENST00000304053.6:c.1452C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14039
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9801
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8054
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala484Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

9-87482168-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482168
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482168
    reference: chr 9
allele count: 8
allele frequency: 6.611023882323775e-5
allele num: 121010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1407C>T
  hgvsp: ENST00000376208.1:c.1407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1455C>T
  hgvsp: ENST00000376214.1:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1455C>T
  hgvsp: ENST00000304053.6:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1407C>T
  hgvsp: ENST00000376213.1:c.1407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1407C>T
  hgvsp: ENST00000323115.4:c.1407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1455C>T
  hgvsp: ENST00000277120.3:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23914
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8051
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser485Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

9-87482169-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482169
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482169
    reference: chr 9
allele count: 2
allele frequency: 1.652728655009421e-5
allele num: 121012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1408G>A
  hgvsp: ENSP00000365386.1:p.Val470Ile
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1408G>A
  hgvsp: ENSP00000365381.1:p.Val470Ile
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1456G>A
  hgvsp: ENSP00000306167.6:p.Val486Ile
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1456G>A
  hgvsp: ENSP00000365387.1:p.Val486Ile
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1456G>A
  hgvsp: ENSP00000277120.3:p.Val486Ile
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1408G>A
  hgvsp: ENSP00000314586.4:p.Val470Ile
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8048
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23931
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val486Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

9-87482177-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482177
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482177
    reference: chr 9
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1464C>T
  hgvsp: ENST00000376214.1:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1416C>T
  hgvsp: ENST00000376208.1:c.1416C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1416C>T
  hgvsp: ENST00000376213.1:c.1416C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1464C>T
  hgvsp: ENST00000277120.3:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1416C>T
  hgvsp: ENST00000323115.4:c.1416C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1464C>T
  hgvsp: ENST00000304053.6:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24013
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3786
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser488Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

9-87482186-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482186
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482186
    reference: chr 9
allele count: 4
allele frequency: 3.300874731803928e-5
allele num: 121180
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1425T>C
  hgvsp: ENST00000323115.4:c.1425T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1473T>C
  hgvsp: ENST00000277120.3:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1473T>C
  hgvsp: ENST00000304053.6:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1425T>C
  hgvsp: ENST00000376213.1:c.1425T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1473T>C
  hgvsp: ENST00000376214.1:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1425T>C
  hgvsp: ENST00000376208.1:c.1425T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14091
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8069
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp491Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/9-87482208-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482208
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482208
    reference: chr 9
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1495C>A
  hgvsp: ENSP00000306167.6:p.His499Asn
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1447C>A
  hgvsp: ENSP00000365386.1:p.His483Asn
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1495C>A
  hgvsp: ENSP00000365387.1:p.His499Asn
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1495C>A
  hgvsp: ENSP00000277120.3:p.His499Asn
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1447C>A
  hgvsp: ENSP00000365381.1:p.His483Asn
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1447C>A
  hgvsp: ENSP00000314586.4:p.His483Asn
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4586
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His499Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/9-87482211-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482211
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482211
    reference: chr 9
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1498A>C
  hgvsp: ENSP00000306167.6:p.Ile500Leu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1450A>C
  hgvsp: ENSP00000365381.1:p.Ile484Leu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1498A>C
  hgvsp: ENSP00000365387.1:p.Ile500Leu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1450A>C
  hgvsp: ENSP00000365386.1:p.Ile484Leu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1450A>C
  hgvsp: ENSP00000314586.4:p.Ile484Leu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1498A>C
  hgvsp: ENSP00000277120.3:p.Ile500Leu
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9823
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24031
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile500Leu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

9-87482224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482224
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482224
    reference: chr 9
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1463G>A
  hgvsp: ENSP00000314586.4:p.Ser488Asn
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1463G>A
  hgvsp: ENSP00000365381.1:p.Ser488Asn
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1511G>A
  hgvsp: ENSP00000277120.3:p.Ser504Asn
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1463G>A
  hgvsp: ENSP00000365386.1:p.Ser488Asn
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1511G>A
  hgvsp: ENSP00000365387.1:p.Ser504Asn
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1511G>A
  hgvsp: ENSP00000306167.6:p.Ser504Asn
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8067
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5410
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser504Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

9-87482234-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482234
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482234
    reference: chr 9
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1521A>G
  hgvsp: ENST00000376214.1:c.1521A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1473A>G
  hgvsp: ENST00000323115.4:c.1473A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1521A>G
  hgvsp: ENST00000304053.6:c.1521A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1473A>G
  hgvsp: ENST00000376213.1:c.1473A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1473A>G
  hgvsp: ENST00000376208.1:c.1473A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1521A>G
  hgvsp: ENST00000277120.3:c.1521A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3787
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4587
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro507Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

9-87482243-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482243
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482243
    reference: chr 9
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1482G>A
  hgvsp: ENST00000323115.4:c.1482G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1482G>A
  hgvsp: ENST00000376208.1:c.1482G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1530G>A
  hgvsp: ENST00000277120.3:c.1530G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1530G>A
  hgvsp: ENST00000304053.6:c.1530G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1482G>A
  hgvsp: ENST00000376213.1:c.1482G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1530G>A
  hgvsp: ENST00000376214.1:c.1530G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3787
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23984
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4586
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser510Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

9-87482251-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482251
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482251
    reference: chr 9
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1490G>T
  hgvsp: ENSP00000314586.4:p.Gly497Val
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1538G>T
  hgvsp: ENSP00000365387.1:p.Gly513Val
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1538G>T
  hgvsp: ENSP00000277120.3:p.Gly513Val
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1538G>T
  hgvsp: ENSP00000306167.6:p.Gly513Val
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1490G>T
  hgvsp: ENSP00000365386.1:p.Gly497Val
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1490G>T
  hgvsp: ENSP00000365381.1:p.Gly497Val
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9826
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3788
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly513Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

9-87482304-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482304
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482304
    reference: chr 9
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1543C>G
  hgvsp: ENSP00000314586.4:p.Gln515Glu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1543C>G
  hgvsp: ENSP00000365381.1:p.Gln515Glu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1591C>G
  hgvsp: ENSP00000277120.3:p.Gln531Glu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1591C>G
  hgvsp: ENSP00000306167.6:p.Gln531Glu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1591C>G
  hgvsp: ENSP00000365387.1:p.Gln531Glu
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1543C>G
  hgvsp: ENSP00000365386.1:p.Gln515Glu
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23827
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln531Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

9-87482314-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482314
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482314
    reference: chr 9
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1553G>A
  hgvsp: ENSP00000314586.4:p.Gly518Asp
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1601G>A
  hgvsp: ENSP00000306167.6:p.Gly534Asp
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1601G>A
  hgvsp: ENSP00000365387.1:p.Gly534Asp
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1553G>A
  hgvsp: ENSP00000365381.1:p.Gly518Asp
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1601G>A
  hgvsp: ENSP00000277120.3:p.Gly534Asp
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1553G>A
  hgvsp: ENSP00000365386.1:p.Gly518Asp
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8052
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4584
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23795
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9827
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly534Asp
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

9-87482324-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482324
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482324
    reference: chr 9
allele count: 2
allele frequency: 1.65456079683648e-5
allele num: 120878
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1611C>G
  hgvsp: ENSP00000306167.6:p.Asn537Lys
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1563C>G
  hgvsp: ENSP00000365386.1:p.Asn521Lys
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1563C>G
  hgvsp: ENSP00000365381.1:p.Asn521Lys
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1611C>G
  hgvsp: ENSP00000277120.3:p.Asn537Lys
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1611C>G
  hgvsp: ENSP00000365387.1:p.Asn537Lys
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1563C>G
  hgvsp: ENSP00000314586.4:p.Asn521Lys
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23686
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5406
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3789
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn537Lys
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

9-87482345-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482345
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482345
    reference: chr 9
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1632A>G
  hgvsp: ENST00000304053.6:c.1632A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1632A>G
  hgvsp: ENST00000376214.1:c.1632A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1584A>G
  hgvsp: ENST00000376213.1:c.1584A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1584A>G
  hgvsp: ENST00000323115.4:c.1584A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1584A>G
  hgvsp: ENST00000376208.1:c.1584A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1632A>G
  hgvsp: ENST00000277120.3:c.1632A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23533
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4583
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1632A>G
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

9-87482359-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482359
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482359
    reference: chr 9
allele count: 2
allele frequency: 1.659282857948795e-5
allele num: 120534
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1633+13G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1585+13G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1585+13G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1633+13G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1633+13G>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1585+13G>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23457
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

9-87482360-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482360
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482360
    reference: chr 9
allele count: 1
allele frequency: 8.298066550493736e-6
allele num: 120510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1585+14T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1633+14T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1633+14T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1585+14T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1585+14T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1633+14T>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25156
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8036
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

9-87482369-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482369
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482369
    reference: chr 9
allele count: 1
allele frequency: 8.302062232258493e-6
allele num: 120452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1633+23A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1585+23A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1585+23A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1585+23A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1633+23A>G
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1633+23A>G
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8035
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9832
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

9-87482370-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482370
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482370
    reference: chr 9
allele count: 1
allele frequency: 8.303027283747654e-6
allele num: 120438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1633+24T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1585+24T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1633+24T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1585+24T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1585+24T>C
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1633+24T>C
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9833
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23378
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

9-87482372-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482372
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482372
    reference: chr 9
allele count: 2
allele frequency: 1.660715768496222e-5
allele num: 120430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1585+26G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1585+26G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1633+26G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1633+26G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1585+26G>T
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1633+26G>T
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5398
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

9-87482373-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87482373
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 87482373
    reference: chr 9
allele count: 885
allele frequency: 7.349521658251396e-3
allele num: 120416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000314586
  ensembl transcript: ENST00000323115
  gene symbol: NTRK2
  hgvsc: ENST00000323115.4:c.1585+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365387
  ensembl transcript: ENST00000376214
  gene symbol: NTRK2
  hgvsc: ENST00000376214.1:c.1633+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000277120
  ensembl transcript: ENST00000277120
  gene symbol: NTRK2
  hgvsc: ENST00000277120.3:c.1633+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365386
  ensembl transcript: ENST00000376213
  gene symbol: NTRK2
  hgvsc: ENST00000376213.1:c.1585+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000365381
  ensembl transcript: ENST00000376208
  gene symbol: NTRK2
  hgvsc: ENST00000376208.1:c.1585+27T>A
  variant of: http://identifiers.org/hgnc/8032
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148053
  ensembl protein: ENSP00000306167
  ensembl transcript: ENST00000304053
  gene symbol: NTRK2
  hgvsc: ENST00000304053.6:c.1633+27T>A
  variant of: http://identifiers.org/hgnc/8032
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 9402
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 13798
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 3.75e1
  variant carriers: 3
num of homozygotes: 33
reference allele: T

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11484
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 379
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35965
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518879674352198e-5
allele num: 65838
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.474052e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.07e-1

FS
type: SiteQuality
SIO_000300: 2.115e0

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
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SIO_000300: 2.886e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.942e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65772
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.118453255017132e-5
allele num: 16344
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

MQ
type: SiteQuality
SIO_000300: 5.001e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.121e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.467159e6

MQRankSum
type: SiteQuality
SIO_000300: -1.189e0

QD
type: SiteQuality
SIO_000300: 2.332e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5253668507276e-5
allele num: 65558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.025e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.249e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.268e-1

FS
type: SiteQuality
SIO_000300: 1.456e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 2.452675e6

QD
type: SiteQuality
SIO_000300: 3.77e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.396e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.355e0

DP
type: SiteQuality
SIO_000300: 2.455016e6

QD
type: SiteQuality
SIO_000300: 9.5e-1

MQ
type: SiteQuality
SIO_000300: 5.233e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.456e0

VQSLOD
type: SiteQuality
SIO_000300: -9.318e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.527e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

MQ
type: SiteQuality
SIO_000300: 5.678e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

DP
type: SiteQuality
SIO_000300: 2.454272e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.556953353677524e-5
allele num: 64228
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11014
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

ClippingRankSum
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SIO_000300: -1.7e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
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Latino
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.305170239596469e-5
allele num: 15860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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East Asian
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.586143450813691e-5
allele num: 63046
num of homozygotes: 0

MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.590280207372539e-5
allele num: 62882
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10662
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European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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VQSLOD
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FS
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.295408068414203e-5
allele num: 10758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.592e1

VQSLOD
type: SiteQuality
SIO_000300: -5.023e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.644e0

DP
type: SiteQuality
SIO_000300: 2.160191e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.072968490878939e-5
allele num: 48240
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.690906e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

QD
type: SiteQuality
SIO_000300: 7.91e0

VQSLOD
type: SiteQuality
SIO_000300: -8.097e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.584e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.517e0

QD
type: SiteQuality
SIO_000300: 1.082e1

DP
type: SiteQuality
SIO_000300: 1.699702e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.119151590767311e-4
allele num: 6412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14064
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

DP
type: SiteQuality
SIO_000300: 1.7304e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.679e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.108156028368794e-4
allele num: 9024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8658
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.047e0

FS
type: SiteQuality
SIO_000300: 2.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.24e-1

QD
type: SiteQuality
SIO_000300: 6.78e0

DP
type: SiteQuality
SIO_000300: 1.757566e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: -8.879e-1

GenotypeQuality
all individuals: 6034
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2083
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.135847342117219e-4
allele num: 8804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.02247191011236e-5
allele num: 14240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.002402883460152e-5
allele num: 49940
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.790691e6

FS
type: SiteQuality
SIO_000300: 5.947e0

VQSLOD
type: SiteQuality
SIO_000300: 4.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

QD
type: SiteQuality
SIO_000300: 1.373e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.886435331230284e-5
allele num: 50720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8980
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

FS
type: SiteQuality
SIO_000300: 2.514e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 1.829075e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.920417882931326e-5
allele num: 52072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.168e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

FS
type: SiteQuality
SIO_000300: 2.982e0

QD
type: SiteQuality
SIO_000300: 5.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.817e1

DP
type: SiteQuality
SIO_000300: 1.871413e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.820565103408098e-5
allele num: 54928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.949174e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

QD
type: SiteQuality
SIO_000300: 1.731e1

GenotypeQuality
all individuals: 2125
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24649
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10564
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 601
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.40016802016242e-4
allele num: 7142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14790
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.731e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

DP
type: SiteQuality
SIO_000300: 1.949174e6

GenotypeQuality
all individuals: 969
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.763481818502451e-5
allele num: 56706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.9907e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.75e-1

QD
type: SiteQuality
SIO_000300: 6.45e0

VQSLOD
type: SiteQuality
SIO_000300: -9.858e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.779e0

GenotypeQuality
all individuals: 390
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6971
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3437
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.337613697164259e-4
allele num: 7476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

QD
type: SiteQuality
SIO_000300: 1.672e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 2.00128e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.385e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.566e0

GenotypeQuality
all individuals: 262
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4024
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
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variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 590
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variant carriers: 0

GenotypeQuality
all individuals: 35519
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variant carriers: 0

GenotypeQuality
all individuals: 2799
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variant carriers: 0

GenotypeQuality
all individuals: 229
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 221
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variant carriers: 0

GenotypeQuality
all individuals: 121
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variant carriers: 0

GenotypeQuality
all individuals: 1420
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variant carriers: 0

GenotypeQuality
all individuals: 10591
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1605
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.946144211844694e-5
allele num: 11178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 2.103575e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.479e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.63e1

MQRankSum
type: SiteQuality
SIO_000300: 9.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.785e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 37374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 226
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 1504
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 10609
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variant carriers: 14

GenotypeQuality
all individuals: 600
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variant carriers: 0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.999323305957983e-4
allele num: 65022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.211180124223603e-5
allele num: 16100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 2.137131e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10598
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37631
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4432
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.180469715698394e-5
allele num: 16180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65474
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.92e-1

DP
type: SiteQuality
SIO_000300: 2.143866e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.012e0

QD
type: SiteQuality
SIO_000300: 1.154e1

GenotypeQuality
all individuals: 10598
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4453
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37562
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.185395922238028e-4
allele num: 8436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65546
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.821e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.145585e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.03e0

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.293e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

QD
type: SiteQuality
SIO_000300: 5.73e0

GenotypeQuality
all individuals: 385
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
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GenotypeQuality
all individuals: 748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10595
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1263
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 3.25e1
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GenotypeQuality
all individuals: 1221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517634917744187e-5
allele num: 65892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.585e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.011e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

QD
type: SiteQuality
SIO_000300: 1.041e1

FS
type: SiteQuality
SIO_000300: 4.14e-1

DP
type: SiteQuality
SIO_000300: 2.132918e6

GenotypeQuality
all individuals: 604
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
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GenotypeQuality
all individuals: 1227
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variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
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variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29693
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variant carriers: 0

GenotypeQuality
all individuals: 10600
bin: 9.75e1
variant carriers: 8

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.748557440111908e-4
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.116601331023795e-5
allele num: 65814
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
type: SiteQuality
SIO_000300: 1.44e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.125018e6

GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1331
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variant carriers: 0

GenotypeQuality
all individuals: 4348
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.336332530731213e-5
allele num: 15782
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

QD
type: SiteQuality
SIO_000300: 2.736e1

VQSLOD
type: SiteQuality
SIO_000300: -5.659e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 2.177e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 1.923853e6

GenotypeQuality
all individuals: 1207
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4980
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.201946783644456e-5
allele num: 62462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15808
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.001602564102564e-4
allele num: 9984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 1.925066e6

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

QD
type: SiteQuality
SIO_000300: 1.614e1

MQ
type: SiteQuality
SIO_000300: 5.909e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1211
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GenotypeQuality
all individuals: 3985
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62858
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.263264274886306e-4
allele num: 7916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

DP
type: SiteQuality
SIO_000300: 2.005288e6

QD
type: SiteQuality
SIO_000300: 6.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 7.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 1226
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variant carriers: 0

GenotypeQuality
all individuals: 1796
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variant carriers: 0

GenotypeQuality
all individuals: 3189
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variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588713777325877e-5
allele num: 62944
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.519526329050139e-4
allele num: 7938
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.820167455405897e-4
allele num: 10988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.284565108094519e-5
allele num: 15912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.374e1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.019773e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4361
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variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.266449429753102e-5
allele num: 15958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 3.183e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.255e0

VQSLOD
type: SiteQuality
SIO_000300: -3.779e0

DP
type: SiteQuality
SIO_000300: 2.04868e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11418
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GenotypeQuality
all individuals: 592
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509023963300537e-5
allele num: 66268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.096817461285209e-5
allele num: 16402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.822e0

QD
type: SiteQuality
SIO_000300: 9.99e0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

DP
type: SiteQuality
SIO_000300: 2.163967e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

VQSLOD
type: SiteQuality
SIO_000300: 7.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 137
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019141356198297e-5
allele num: 66244
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
SIO_000300: 4.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.161136e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019232511095679e-5
allele num: 66242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.104260774020266e-5
allele num: 16382
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.249e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
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allele num: 8520
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Other
type: Population
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allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
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Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510117789187557e-5
allele num: 66220
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.892e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.62e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.4e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 834
bin: 9.25e1
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GenotypeQuality
all individuals: 1300
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.10798924993892e-5
allele num: 16372
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.915e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.71e0

VQSLOD
type: SiteQuality
SIO_000300: 5.13e-1

DP
type: SiteQuality
SIO_000300: 2.158795e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

FS
type: SiteQuality
SIO_000300: 8.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.27e-1

QD
type: SiteQuality
SIO_000300: 1.39e1

GenotypeQuality
all individuals: 1288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4941
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11421
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1561
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.53802868034126e-5
allele num: 66108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.566e0

MQRankSum
type: SiteQuality
SIO_000300: 7.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

QD
type: SiteQuality
SIO_000300: 9.98e0

VQSLOD
type: SiteQuality
SIO_000300: 5.46e-1

DP
type: SiteQuality
SIO_000300: 2.15059e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.98e-1

GenotypeQuality
all individuals: 117
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
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variant carriers: 0

GenotypeQuality
all individuals: 34886
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513454611496201e-5
allele num: 66074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.158e0

QD
type: SiteQuality
SIO_000300: 1.019e1

MQRankSum
type: SiteQuality
SIO_000300: -4.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.498e0

DP
type: SiteQuality
SIO_000300: 2.147638e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11416
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514463122822959e-5
allele num: 66030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

DP
type: SiteQuality
SIO_000300: 2.139553e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

QD
type: SiteQuality
SIO_000300: 1.289e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.16e0

VQSLOD
type: SiteQuality
SIO_000300: 4.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
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variant carriers: 0

GenotypeQuality
all individuals: 633
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variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514646632940535e-5
allele num: 66022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: -8.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.559e0

DP
type: SiteQuality
SIO_000300: 2.13717e6

VQSLOD
type: SiteQuality
SIO_000300: -5.86e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

QD
type: SiteQuality
SIO_000300: 1.516e1

FS
type: SiteQuality
SIO_000300: 5.267e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.2e-1

GenotypeQuality
all individuals: 29196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.181195369714151e-4
allele num: 8466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

QD
type: SiteQuality
SIO_000300: 1.177e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.874e0

DP
type: SiteQuality
SIO_000300: 2.10612e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.98e-1

MQ
type: SiteQuality
SIO_000300: 5.825e1

MQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 1041
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1881
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variant carriers: 0

GenotypeQuality
all individuals: 26166
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65840
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.182592242194891e-4
allele num: 8456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.033e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.226e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.396e0

FS
type: SiteQuality
SIO_000300: 3.6136e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.416e0

MQ
type: SiteQuality
SIO_000300: 5.177e1

QD
type: SiteQuality
SIO_000300: 4.6e-1

DP
type: SiteQuality
SIO_000300: 2.088534e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 3224
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4013
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
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variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.040900106431504e-5
allele num: 65770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.072246e6

FS
type: SiteQuality
SIO_000300: 9.388999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.177e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

MQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 1.439e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4324
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11413
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4374
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variant carriers: 0

GenotypeQuality
all individuals: 2469
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527557130636686e-5
allele num: 65464
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 3.142e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.931e0

DP
type: SiteQuality
SIO_000300: 2.069969e6

GenotypeQuality
all individuals: 1277
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550868486352357e-5
allele num: 64480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.441e1

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.686e0

VQSLOD
type: SiteQuality
SIO_000300: 4.19e-1

DP
type: SiteQuality
SIO_000300: 1.595693e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.861e0

FS
type: SiteQuality
SIO_000300: 3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
all individuals: 20410
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539314081645219e-5
allele num: 64964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.602e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.130000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.689772e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.157e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.282e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.749696e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.107e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.173e1

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9754
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512493193780628e-5
allele num: 66116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

VQSLOD
type: SiteQuality
SIO_000300: -5.608e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.346e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: -1.16e0

DP
type: SiteQuality
SIO_000300: 1.766671e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.142e1

GenotypeQuality
all individuals: 4570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8034
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505978735580254e-5
allele num: 66402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.066e0

DP
type: SiteQuality
SIO_000300: 1.775141e6

QD
type: SiteQuality
SIO_000300: 1.294e1

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9789
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variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.775141e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.294e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.066e0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006433768264085e-5
allele num: 66524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.841e0

QD
type: SiteQuality
SIO_000300: 1.388e1

FS
type: SiteQuality
SIO_000300: 3.65e0

VQSLOD
type: SiteQuality
SIO_000300: 7.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.777648e6

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4580
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 5404
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3782
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.508837321149453e-5
allele num: 66536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.032508491023775e-4
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

FS
type: SiteQuality
SIO_000300: 1.433e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.778876e6

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

GenotypeQuality
all individuals: 4578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9812
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5401
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213150551983501e-4
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.385e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.58e0

FS
type: SiteQuality
SIO_000300: 1.971e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.133e0

DP
type: SiteQuality
SIO_000300: 1.779107e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 1.780394e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.454e0

VQSLOD
type: SiteQuality
SIO_000300: 7.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.261e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.634994206257242e-4
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.373e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.97e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

DP
type: SiteQuality
SIO_000300: 1.781256e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 1.78229e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

FS
type: SiteQuality
SIO_000300: 2.287e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.708e0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.81e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4583
bin: 8.25e1
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GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.92e0

MQ
type: SiteQuality
SIO_000300: 5.814e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

QD
type: SiteQuality
SIO_000300: 1.464e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

DP
type: SiteQuality
SIO_000300: 1.782371e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3788
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4586
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

FS
type: SiteQuality
SIO_000300: 7.73e-1

QD
type: SiteQuality
SIO_000300: 1.188e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-1

DP
type: SiteQuality
SIO_000300: 1.782465e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.354e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.265e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.191e0

MQRankSum
type: SiteQuality
SIO_000300: -1.282e0

DP
type: SiteQuality
SIO_000300: 1.782484e6

FS
type: SiteQuality
SIO_000300: 1.5502e1

VQSLOD
type: SiteQuality
SIO_000300: -2.261e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.305e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 9825
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.04e0

VQSLOD
type: SiteQuality
SIO_000300: -1.405e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 9.247e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.782439e6

QD
type: SiteQuality
SIO_000300: 7.44e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.227e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.455e-1

FS
type: SiteQuality
SIO_000300: 1.0002e1

MQRankSum
type: SiteQuality
SIO_000300: 2.32e0

QD
type: SiteQuality
SIO_000300: 1.237e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.782334e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2771
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.780062e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.622e0

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 1.1828e1

VQSLOD
type: SiteQuality
SIO_000300: -2.287e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.453e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.979e0

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.16e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319647413593134e-4
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.447e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.778325e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507840772014475e-5
allele num: 66320
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.96e-1

QD
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509433962264151e-5
allele num: 66250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
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African
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509661835748792e-5
allele num: 66240
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10208
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.82e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.902e0

MQRankSum
type: SiteQuality
SIO_000300: -7.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.774092e6

QD
type: SiteQuality
SIO_000300: 7.21e0

GenotypeQuality
all individuals: 5400
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4581
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23400
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510574018126888e-5
allele num: 66200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.377e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 2.51e0

DP
type: SiteQuality
SIO_000300: 1.773423e6

MQ
type: SiteQuality
SIO_000300: 5.908e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.19e0

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

GenotypeQuality
all individuals: 2029
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5400
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.741e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: -4.18e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.773215e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.06e-2

QD
type: SiteQuality
SIO_000300: 1.593e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.53e-1

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9835
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2029
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4582
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8030
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.961553550411926e-4
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.213e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 4.614e0

VQSLOD
type: SiteQuality
SIO_000300: 7.62e-1

QD
type: SiteQuality
SIO_000300: 1.389e1

DP
type: SiteQuality
SIO_000300: 1.773278e6