5-179290685-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290685
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290685
    reference: chr 5
allele count: 2
allele frequency: 1.654204989082247e-5
allele num: 120904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1794C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.644C>T
  hgvsp: ENST00000524222.1:c.644C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3516C>T
  hgvsp: ENST00000356834.3:c.3516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3465C>T
  hgvsp: ENST00000355235.3:c.3465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.939C>T
  hgvsp: ENST00000444477.2:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1087C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2219C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.2016C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.993C>T
  hgvsp: ENST00000519746.1:c.993C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11817
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp1172Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

5-179290689-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290689
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290689
    reference: chr 5
allele count: 1
allele frequency: 8.270204108637402e-6
allele num: 120916
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3512C>T
  hgvsp: ENSP00000349291.3:p.Ala1171Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1091C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.935C>T
  hgvsp: ENSP00000401585.2:p.Ala312Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.640C>T
  hgvsp: ENSP00000428724.1:p.Ala214Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.989C>T
  hgvsp: ENSP00000430293.1:p.Ala330Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2215C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.2012C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3461C>T
  hgvsp: ENSP00000347375.3:p.Ala1154Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1790C>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11819
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala1171Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-179290693-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290693
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290693
    reference: chr 5
allele count: 9
allele frequency: 7.442322004465393e-5
allele num: 120930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.931C>G
  hgvsp: ENSP00000401585.2:p.Leu311Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1095C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2211C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3508C>G
  hgvsp: ENSP00000349291.3:p.Leu1170Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3457C>G
  hgvsp: ENSP00000347375.3:p.Leu1153Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.985C>G
  hgvsp: ENSP00000430293.1:p.Leu329Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.2008C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.636C>G
  hgvsp: ENSP00000428724.1:p.Leu213Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1786C>G
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4688
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7090
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu1170Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

5-179290702-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290702
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290702
    reference: chr 5
allele count: 2
allele frequency: 1.653657891255457e-5
allele num: 120944
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.627T>C
  hgvsp: ENSP00000428724.1:p.Cys210Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.922T>C
  hgvsp: ENSP00000401585.2:p.Cys308Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.976T>C
  hgvsp: ENSP00000430293.1:p.Cys326Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3448T>C
  hgvsp: ENSP00000347375.3:p.Cys1150Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1777T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1999T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3499T>C
  hgvsp: ENSP00000349291.3:p.Cys1167Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2202T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1104T>C
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4691
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3553
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys1167Arg
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

5-179290712-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290712
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290712
    reference: chr 5
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1989C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.966C>G
  hgvsp: ENST00000519746.1:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.912C>G
  hgvsp: ENST00000444477.2:c.912C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1767C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1114C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2192C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3489C>G
  hgvsp: ENST00000356834.3:c.3489C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3438C>G
  hgvsp: ENST00000355235.3:c.3438C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.617C>G
  hgvsp: ENST00000524222.1:c.617C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4688
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly1163Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-179290715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290715
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290715
    reference: chr 5
allele count: 13
allele frequency: 1.074842080894269e-4
allele num: 120948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.909G>A
  hgvsp: ENST00000444477.2:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3435G>A
  hgvsp: ENST00000355235.3:c.3435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.614G>A
  hgvsp: ENST00000524222.1:c.614G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3486G>A
  hgvsp: ENST00000356834.3:c.3486G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1117G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1986G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.963G>A
  hgvsp: ENST00000519746.1:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2189G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1764G>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr1162Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

5-179290717-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290717
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290717
    reference: chr 5
allele count: 1
allele frequency: 8.267742575567167e-6
allele num: 120952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3433A>T
  hgvsp: ENSP00000347375.3:p.Thr1145Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2187A>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1984A>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.961A>T
  hgvsp: ENSP00000430293.1:p.Thr321Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3484A>T
  hgvsp: ENSP00000349291.3:p.Thr1162Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1762A>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.907A>T
  hgvsp: ENSP00000401585.2:p.Thr303Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.612A>T
  hgvsp: ENSP00000428724.1:p.Thr205Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1119A>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7096
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr1162Ser
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-179290720-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290720
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290720
    reference: chr 5
allele count: 3
allele frequency: 2.480445818795165e-5
allele num: 120946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2184A>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.904A>C
  hgvsp: ENSP00000401585.2:p.Ser302Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1122A>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.609A>C
  hgvsp: ENSP00000428724.1:p.Ser204Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3481A>C
  hgvsp: ENSP00000349291.3:p.Ser1161Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1981A>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3430A>C
  hgvsp: ENSP00000347375.3:p.Ser1144Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.958A>C
  hgvsp: ENSP00000430293.1:p.Ser320Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1759A>C
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7089
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser1161Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

5-179290727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290727
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290727
    reference: chr 5
allele count: 7
allele frequency: 5.7878026193941e-5
allele num: 120944
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3474G>A
  hgvsp: ENST00000356834.3:c.3474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2177G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3423G>A
  hgvsp: ENST00000355235.3:c.3423G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.897G>A
  hgvsp: ENST00000444477.2:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.951G>A
  hgvsp: ENST00000519746.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1752G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1974G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.602G>A
  hgvsp: ENST00000524222.1:c.602G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1129G>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 17695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3557
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser1158Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-179290728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290728
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290728
    reference: chr 5
allele count: 5
allele frequency: 4.133939644481191e-5
allele num: 120950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1130C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3473C>T
  hgvsp: ENSP00000349291.3:p.Ser1158Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.950C>T
  hgvsp: ENSP00000430293.1:p.Ser317Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.601C>T
  hgvsp: ENSP00000428724.1:p.Ser201Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1751C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.896C>T
  hgvsp: ENSP00000401585.2:p.Ser299Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3422C>T
  hgvsp: ENSP00000347375.3:p.Ser1141Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2176C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1973C>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser1158Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

5-179290730-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290730
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290730
    reference: chr 5
allele count: 2
allele frequency: 1.65338447802652e-5
allele num: 120964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1749C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1971C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3420C>T
  hgvsp: ENST00000355235.3:c.3420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3471C>T
  hgvsp: ENST00000356834.3:c.3471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2174C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.894C>T
  hgvsp: ENST00000444477.2:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1132C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.948C>T
  hgvsp: ENST00000519746.1:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.599C>T
  hgvsp: ENST00000524222.1:c.599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11846
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Tyr1157Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

5-179290738-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290738
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290738
    reference: chr 5
allele count: 2
allele frequency: 1.653357141676174e-5
allele num: 120966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.886T>C
  hgvsp: ENSP00000401585.2:p.Ser296Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3463T>C
  hgvsp: ENSP00000349291.3:p.Ser1155Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1963T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1741T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.591T>C
  hgvsp: ENSP00000428724.1:p.Ser198Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3412T>C
  hgvsp: ENSP00000347375.3:p.Ser1138Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.940T>C
  hgvsp: ENSP00000430293.1:p.Ser314Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2166T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1140T>C
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17769
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23311
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser1155Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

5-179290739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290739
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290739
    reference: chr 5
allele count: 1
allele frequency: 8.265965712774223e-6
allele num: 120978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1962G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.939G>A
  hgvsp: ENSP00000430293.1:p.Met313Ile
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.885G>A
  hgvsp: ENSP00000401585.2:p.Met295Ile
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3462G>A
  hgvsp: ENSP00000349291.3:p.Met1154Ile
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1141G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1740G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3411G>A
  hgvsp: ENSP00000347375.3:p.Met1137Ile
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.590G>A
  hgvsp: ENSP00000428724.1:p.Met197Ile
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2165G>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met1154Ile
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

5-179290745-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290745
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290745
    reference: chr 5
allele count: 2
allele frequency: 1.652892561983471e-5
allele num: 121000
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3456G>A
  hgvsp: ENSP00000349291.3:p.Met1152Ile
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.879G>A
  hgvsp: ENSP00000401585.2:p.Met293Ile
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.584G>A
  hgvsp: ENSP00000428724.1:p.Met195Ile
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1734G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.933G>A
  hgvsp: ENSP00000430293.1:p.Met311Ile
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2159G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3405G>A
  hgvsp: ENSP00000347375.3:p.Met1135Ile
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1956G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1147G>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3569
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met1152Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

5-179290749-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290749
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290749
    reference: chr 5
allele count: 1
allele frequency: 8.263779852904718e-6
allele num: 121010
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3452A>G
  hgvsp: ENSP00000349291.3:p.Asp1151Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.875A>G
  hgvsp: ENSP00000401585.2:p.Asp292Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1151A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.580A>G
  hgvsp: ENSP00000428724.1:p.Asp194Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1730A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1952A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.929A>G
  hgvsp: ENSP00000430293.1:p.Asp310Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3401A>G
  hgvsp: ENSP00000347375.3:p.Asp1134Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2155A>G
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp1151Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-179290750-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290750
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290750
    reference: chr 5
allele count: 2
allele frequency: 1.652592090694254e-5
allele num: 121022
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3451G>A
  hgvsp: ENSP00000349291.3:p.Asp1151Asn
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2154G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3400G>A
  hgvsp: ENSP00000347375.3:p.Asp1134Asn
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.874G>A
  hgvsp: ENSP00000401585.2:p.Asp292Asn
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1152G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.579G>A
  hgvsp: ENSP00000428724.1:p.Asp194Asn
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.928G>A
  hgvsp: ENSP00000430293.1:p.Asp310Asn
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1729G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1951G>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4025
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11851
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp1151Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-179290751-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290751
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290751
    reference: chr 5
allele count: 12
allele frequency: 9.915716410510659e-5
allele num: 121020
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3450C>T
  hgvsp: ENST00000356834.3:c.3450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.578C>T
  hgvsp: ENST00000524222.1:c.578C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.927C>T
  hgvsp: ENST00000519746.1:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3399C>T
  hgvsp: ENST00000355235.3:c.3399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.873C>T
  hgvsp: ENST00000444477.2:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1728C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2153C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1153C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1950C>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3573
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp1150Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

5-179290763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290763
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290763
    reference: chr 5
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.566T>C
  hgvsp: ENST00000524222.1:c.566T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3438T>C
  hgvsp: ENST00000356834.3:c.3438T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.861T>C
  hgvsp: ENST00000444477.2:c.861T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3387T>C
  hgvsp: ENST00000355235.3:c.3387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1165T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.915T>C
  hgvsp: ENST00000519746.1:c.915T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1716T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1938T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2141T>C
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11858
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp1146Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

5-179290765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290765
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290765
    reference: chr 5
allele count: 4
allele frequency: 3.304801877127466e-5
allele num: 121036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1714G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.859G>A
  hgvsp: ENSP00000401585.2:p.Asp287Asn
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3385G>A
  hgvsp: ENSP00000347375.3:p.Asp1129Asn
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2139G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.913G>A
  hgvsp: ENSP00000430293.1:p.Asp305Asn
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.564G>A
  hgvsp: ENSP00000428724.1:p.Asp189Asn
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1167G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3436G>A
  hgvsp: ENSP00000349291.3:p.Asp1146Asn
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1936G>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4695
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp1146Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

5-179290766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290766
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290766
    reference: chr 5
allele count: 4
allele frequency: 3.304692663582287e-5
allele num: 121040
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3435C>T
  hgvsp: ENST00000356834.3:c.3435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.912C>T
  hgvsp: ENST00000519746.1:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1168C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.563C>T
  hgvsp: ENST00000524222.1:c.563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.858C>T
  hgvsp: ENST00000444477.2:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3384C>T
  hgvsp: ENST00000355235.3:c.3384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1713C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1935C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2138C>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4695
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp1145Asp
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

5-179290771-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290771
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290771
    reference: chr 5
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1708T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3430T>C
  hgvsp: ENSP00000349291.3:p.Ser1144Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.853T>C
  hgvsp: ENSP00000401585.2:p.Ser285Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.558T>C
  hgvsp: ENSP00000428724.1:p.Ser187Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3379T>C
  hgvsp: ENSP00000347375.3:p.Ser1127Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.907T>C
  hgvsp: ENSP00000430293.1:p.Ser303Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2133T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1173T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1930T>C
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3569
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser1144Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

5-179290779-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290779
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290779
    reference: chr 5
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1181A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3371A>G
  hgvsp: ENSP00000347375.3:p.Gln1124Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2125A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.550A>G
  hgvsp: ENSP00000428724.1:p.Gln184Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1922A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.845A>G
  hgvsp: ENSP00000401585.2:p.Gln282Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3422A>G
  hgvsp: ENSP00000349291.3:p.Gln1141Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1700A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.899A>G
  hgvsp: ENSP00000430293.1:p.Gln300Arg
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln1141Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

5-179290781-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290781
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290781
    reference: chr 5
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2123C>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3420C>A
  hgvsp: ENST00000356834.3:c.3420C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1698C>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.897C>A
  hgvsp: ENST00000519746.1:c.897C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.843C>A
  hgvsp: ENST00000444477.2:c.843C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3369C>A
  hgvsp: ENST00000355235.3:c.3369C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.548C>A
  hgvsp: ENST00000524222.1:c.548C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1183C>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1920C>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser1140Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

5-179290785-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290785
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290785
    reference: chr 5
allele count: 11
allele frequency: 9.088505519201534e-5
allele num: 121032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.839C>T
  hgvsp: ENSP00000401585.2:p.Pro280Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1916C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3416C>T
  hgvsp: ENSP00000349291.3:p.Pro1139Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3365C>T
  hgvsp: ENSP00000347375.3:p.Pro1122Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1694C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.893C>T
  hgvsp: ENSP00000430293.1:p.Pro298Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1187C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.544C>T
  hgvsp: ENSP00000428724.1:p.Pro182Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2119C>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16156
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11316
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4692
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro1139Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

5-179290788-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290788
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290788
    reference: chr 5
allele count: 8
allele frequency: 6.609166914510426e-5
allele num: 121044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.541C>T
  hgvsp: ENSP00000428724.1:p.Ser181Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1913C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1691C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1190C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2116C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3362C>T
  hgvsp: ENSP00000347375.3:p.Ser1121Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3413C>T
  hgvsp: ENSP00000349291.3:p.Ser1138Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.836C>T
  hgvsp: ENSP00000401585.2:p.Ser279Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.890C>T
  hgvsp: ENSP00000430293.1:p.Ser297Leu
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser1138Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP

5-179290793-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290793
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290793
    reference: chr 5
allele count: 3
allele frequency: 2.479174930583102e-5
allele num: 121008
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2111G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1195G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3357G>C
  hgvsp: ENSP00000347375.3:p.Gln1119His
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1908G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.831G>C
  hgvsp: ENSP00000401585.2:p.Gln277His
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.536G>C
  hgvsp: ENSP00000428724.1:p.Gln179His
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3408G>C
  hgvsp: ENSP00000349291.3:p.Gln1136His
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1686G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.885G>C
  hgvsp: ENSP00000430293.1:p.Gln295His
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln1136His
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

5-179290794-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290794
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290794
    reference: chr 5
allele count: 21
allele frequency: 1.735221695228967e-4
allele num: 121022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3356A>G
  hgvsp: ENSP00000347375.3:p.Gln1119Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.884A>G
  hgvsp: ENSP00000430293.1:p.Gln295Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2110A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1196A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.535A>G
  hgvsp: ENSP00000428724.1:p.Gln179Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1907A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3407A>G
  hgvsp: ENSP00000349291.3:p.Gln1136Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.830A>G
  hgvsp: ENSP00000401585.2:p.Gln277Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1685A>G
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3561
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln1136Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-179290801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290801
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290801
    reference: chr 5
allele count: 8
allele frequency: 6.611242417731352e-5
allele num: 121006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2103G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.528G>A
  hgvsp: ENSP00000428724.1:p.Glu177Lys
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.877G>A
  hgvsp: ENSP00000430293.1:p.Glu293Lys
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1678G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3349G>A
  hgvsp: ENSP00000347375.3:p.Glu1117Lys
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.823G>A
  hgvsp: ENSP00000401585.2:p.Glu275Lys
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1203G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3400G>A
  hgvsp: ENSP00000349291.3:p.Glu1134Lys
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1900G>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4688
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22859
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu1134Lys
num of homozygotes: 1
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

5-179290802-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290802
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290802
    reference: chr 5
allele count: 11
allele frequency: 9.089707146162491e-5
allele num: 121016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3348C>T
  hgvsp: ENST00000355235.3:c.3348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.876C>T
  hgvsp: ENST00000519746.1:c.876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1677C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.822C>T
  hgvsp: ENST00000444477.2:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3399C>T
  hgvsp: ENST00000356834.3:c.3399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.527C>T
  hgvsp: ENST00000524222.1:c.527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2102C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1899C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1204C>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11924
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 4686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly1133Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

5-179290802-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290802
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290802
    reference: chr 5
allele count: 21
allele frequency: 1.735307727903748e-4
allele num: 121016
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.822C>G
  hgvsp: ENST00000444477.2:c.822C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.527C>G
  hgvsp: ENST00000524222.1:c.527C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3348C>G
  hgvsp: ENST00000355235.3:c.3348C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1899C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2102C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1204C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.876C>G
  hgvsp: ENST00000519746.1:c.876C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1677C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3399C>G
  hgvsp: ENST00000356834.3:c.3399C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly1133Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-179290804-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290804
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290804
    reference: chr 5
allele count: 1
allele frequency: 8.26405302216419e-6
allele num: 121006
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3397G>T
  hgvsp: ENSP00000349291.3:p.Gly1133Cys
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.525G>T
  hgvsp: ENSP00000428724.1:p.Gly176Cys
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1897G>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1206G>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.820G>T
  hgvsp: ENSP00000401585.2:p.Gly274Cys
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3346G>T
  hgvsp: ENSP00000347375.3:p.Gly1116Cys
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.874G>T
  hgvsp: ENSP00000430293.1:p.Gly292Cys
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1675G>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2100G>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly1133Cys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

5-179290804-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290804
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290804
    reference: chr 5
allele count: 4
allele frequency: 3.305621208865676e-5
allele num: 121006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3346G>A
  hgvsp: ENSP00000347375.3:p.Gly1116Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1897G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1206G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3397G>A
  hgvsp: ENSP00000349291.3:p.Gly1133Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.820G>A
  hgvsp: ENSP00000401585.2:p.Gly274Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2100G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1675G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.525G>A
  hgvsp: ENSP00000428724.1:p.Gly176Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.874G>A
  hgvsp: ENSP00000430293.1:p.Gly292Ser
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly1133Ser
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

5-179290808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290808
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290808
    reference: chr 5
allele count: 1
allele frequency: 8.268699664290793e-6
allele num: 120938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.816C>T
  hgvsp: ENST00000444477.2:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3393C>T
  hgvsp: ENST00000356834.3:c.3393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.870C>T
  hgvsp: ENST00000519746.1:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1210C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3342C>T
  hgvsp: ENST00000355235.3:c.3342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1671C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.521C>T
  hgvsp: ENST00000524222.1:c.521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1893C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2096C>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4029
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly1131Gly
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

5-179290810-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290810
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290810
    reference: chr 5
allele count: 1
allele frequency: 8.265009256810368e-6
allele num: 120992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.868G>A
  hgvsp: ENSP00000430293.1:p.Gly290Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3340G>A
  hgvsp: ENSP00000347375.3:p.Gly1114Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2094G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.814G>A
  hgvsp: ENSP00000401585.2:p.Gly272Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1891G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1212G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.519G>A
  hgvsp: ENSP00000428724.1:p.Gly174Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3391G>A
  hgvsp: ENSP00000349291.3:p.Gly1131Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1669G>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly1131Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/5-179290812-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290812
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290812
    reference: chr 5
allele count: 3
allele frequency: 2.479789713832267e-5
allele num: 120978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3338G>T
  hgvsp: ENSP00000347375.3:p.Gly1113Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3389G>T
  hgvsp: ENSP00000349291.3:p.Gly1130Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.866G>T
  hgvsp: ENSP00000430293.1:p.Gly289Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.517G>T
  hgvsp: ENSP00000428724.1:p.Gly173Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.812G>T
  hgvsp: ENSP00000401585.2:p.Gly271Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2092G>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1214G>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1889G>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1667G>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12056
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7076
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly1130Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

5-179290812-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290812
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290812
    reference: chr 5
allele count: 162
allele frequency: 1.339086445469424e-3
allele num: 120978
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2092G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.812G>C
  hgvsp: ENSP00000401585.2:p.Gly271Ala
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3338G>C
  hgvsp: ENSP00000347375.3:p.Gly1113Ala
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.866G>C
  hgvsp: ENSP00000430293.1:p.Gly289Ala
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1667G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1889G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.517G>C
  hgvsp: ENSP00000428724.1:p.Gly173Ala
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3389G>C
  hgvsp: ENSP00000349291.3:p.Gly1130Ala
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1214G>C
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15809
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11248
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17576
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3540
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12056
  bin: 9.75e1
  variant carriers: 162
hgvs: p.Gly1130Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/5-179290813-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290813
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290813
    reference: chr 5
allele count: 3
allele frequency: 2.479625741821368e-5
allele num: 120986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3337G>T
  hgvsp: ENSP00000347375.3:p.Gly1113Trp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3388G>T
  hgvsp: ENSP00000349291.3:p.Gly1130Trp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1666G>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.811G>T
  hgvsp: ENSP00000401585.2:p.Gly271Trp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1215G>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1888G>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.865G>T
  hgvsp: ENSP00000430293.1:p.Gly289Trp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2091G>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.516G>T
  hgvsp: ENSP00000428724.1:p.Gly173Trp
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7083
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly1130Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

5-179290814-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290814
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290814
    reference: chr 5
allele count: 1
allele frequency: 8.264872638312644e-6
allele num: 120994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3336G>C
  hgvsp: ENSP00000347375.3:p.Glu1112Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1665G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1887G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3387G>C
  hgvsp: ENSP00000349291.3:p.Glu1129Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1216G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2090G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.810G>C
  hgvsp: ENSP00000401585.2:p.Glu270Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.864G>C
  hgvsp: ENSP00000430293.1:p.Glu288Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.515G>C
  hgvsp: ENSP00000428724.1:p.Glu172Asp
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3542
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu1129Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

5-179290814-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290814
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290813
    reference: chr 5
allele count: 1
allele frequency: 8.264872638312644e-6
allele num: 120994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.514delA
  hgvsp: ENSP00000428724.1:p.Glu172GlyfsTer80
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3335delA
  hgvsp: ENSP00000347375.3:p.Glu1112GlyfsTer80
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1664delA
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1217delA
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3386delA
  hgvsp: ENSP00000349291.3:p.Glu1129GlyfsTer80
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.863delA
  hgvsp: ENSP00000430293.1:p.Glu288GlyfsTer80
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.809delA
  hgvsp: ENSP00000401585.2:p.Glu270GlyfsTer80
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1886delA
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2089delA
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3542
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu1129GlyfsTer80
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: CT
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-179290818-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290818
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290818
    reference: chr 5
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1220T>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3332T>G
  hgvsp: ENSP00000347375.3:p.Val1111Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.806T>G
  hgvsp: ENSP00000401585.2:p.Val269Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3383T>G
  hgvsp: ENSP00000349291.3:p.Val1128Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1883T>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.860T>G
  hgvsp: ENSP00000430293.1:p.Val287Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.511T>G
  hgvsp: ENSP00000428724.1:p.Val171Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2086T>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1661T>G
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val1128Gly
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP

5-179290825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290825
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290825
    reference: chr 5
allele count: 1
allele frequency: 8.266375690242371e-6
allele num: 120972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3325G>A
  hgvsp: ENSP00000347375.3:p.Val1109Met
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.853G>A
  hgvsp: ENSP00000430293.1:p.Val285Met
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1654G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2079G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1876G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.799G>A
  hgvsp: ENSP00000401585.2:p.Val267Met
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.504G>A
  hgvsp: ENSP00000428724.1:p.Val169Met
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3376G>A
  hgvsp: ENSP00000349291.3:p.Val1126Met
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1227G>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11265
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12044
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val1126Met
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

5-179290825-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290825
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290825
    reference: chr 5
allele count: 1
allele frequency: 8.266375690242371e-6
allele num: 120972
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3376G>C
  hgvsp: ENSP00000349291.3:p.Val1126Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.853G>C
  hgvsp: ENSP00000430293.1:p.Val285Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2079G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.504G>C
  hgvsp: ENSP00000428724.1:p.Val169Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1227G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.799G>C
  hgvsp: ENSP00000401585.2:p.Val267Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3325G>C
  hgvsp: ENSP00000347375.3:p.Val1109Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1654G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1876G>C
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4027
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22152
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val1126Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

5-179290828-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290828
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290828
    reference: chr 5
allele count: 1
allele frequency: 8.266785708380868e-6
allele num: 120966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3322C>G
  hgvsp: ENSP00000347375.3:p.Gln1108Glu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1230C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3373C>G
  hgvsp: ENSP00000349291.3:p.Gln1125Glu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.796C>G
  hgvsp: ENSP00000401585.2:p.Gln266Glu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2076C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1651C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1873C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.501C>G
  hgvsp: ENSP00000428724.1:p.Gln168Glu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.850C>G
  hgvsp: ENSP00000430293.1:p.Gln284Glu
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7089
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12044
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln1125Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

5-179290832-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290832
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290832
    reference: chr 5
allele count: 3
allele frequency: 2.479871707970308e-5
allele num: 120974
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3369G>C
  hgvsp: ENSP00000349291.3:p.Glu1123Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.497G>C
  hgvsp: ENSP00000428724.1:p.Glu166Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2072G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1234G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3318G>C
  hgvsp: ENSP00000347375.3:p.Glu1106Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1647G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.792G>C
  hgvsp: ENSP00000401585.2:p.Glu264Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.846G>C
  hgvsp: ENSP00000430293.1:p.Glu282Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1869G>C
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15607
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4039
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7094
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu1123Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

5-179290836-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290836
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290836
    reference: chr 5
allele count: 2
allele frequency: 1.653603201375798e-5
allele num: 120948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3314A>C
  hgvsp: ENSP00000347375.3:p.Gln1105Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1238A>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.788A>C
  hgvsp: ENSP00000401585.2:p.Gln263Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3365A>C
  hgvsp: ENSP00000349291.3:p.Gln1122Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1643A>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2068A>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1865A>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.842A>C
  hgvsp: ENSP00000430293.1:p.Gln281Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.493A>C
  hgvsp: ENSP00000428724.1:p.Gln165Pro
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln1122Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-179290842-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290842
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290842
    reference: chr 5
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.782C>A
  hgvsp: ENSP00000401585.2:p.Ala261Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3308C>A
  hgvsp: ENSP00000347375.3:p.Ala1103Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.836C>A
  hgvsp: ENSP00000430293.1:p.Ala279Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2062C>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.487C>A
  hgvsp: ENSP00000428724.1:p.Ala163Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1637C>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3359C>A
  hgvsp: ENSP00000349291.3:p.Ala1120Asp
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1859C>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1244C>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11314
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21843
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7081
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala1120Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

5-179290845-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290845
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290845
    reference: chr 5
allele count: 66171
allele frequency: 5.467141464381909e-1
allele num: 121034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1634A>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.833A>C
  hgvsp: ENSP00000430293.1:p.Lys278Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2059A>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.779A>C
  hgvsp: ENSP00000401585.2:p.Lys260Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1856A>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.484A>C
  hgvsp: ENSP00000428724.1:p.Lys162Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3356A>C
  hgvsp: ENSP00000349291.3:p.Lys1119Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1247A>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3305A>C
  hgvsp: ENSP00000347375.3:p.Lys1102Thr
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.75e1
  variant carriers: 501
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 414
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 3.25e1
  variant carriers: 1329
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 585
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 2.25e1
  variant carriers: 870
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.75e1
  variant carriers: 411
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 623
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 8.25e1
  variant carriers: 538
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 7615
  bin: 2.75e1
  variant carriers: 1184
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 217
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.25e1
  variant carriers: 923
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 4.75e1
  variant carriers: 711
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.75e1
  variant carriers: 501
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.75e1
  variant carriers: 503
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.25e1
  variant carriers: 760
genotype depth: GenotypeDepth
  all individuals: 35475
  bin: 9.75e1
  variant carriers: 35449
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 3.75e1
  variant carriers: 1270
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.25e1
  variant carriers: 463
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 5
hgvs: p.Lys1119Thr
num of homozygotes: 18925
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

5-179290847-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290847
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290847
    reference: chr 5
allele count: 6
allele frequency: 4.962204542071224e-5
allele num: 120914
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3354A>G
  hgvsp: ENST00000356834.3:c.3354A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1854A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.482A>G
  hgvsp: ENST00000524222.1:c.482A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.831A>G
  hgvsp: ENST00000519746.1:c.831A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2057A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1249A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1632A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3303A>G
  hgvsp: ENST00000355235.3:c.3303A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.777A>G
  hgvsp: ENST00000444477.2:c.777A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32024
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 9.75e1
  variant carriers: 6
hgvs: p.Gly1118Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

5-179290848-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290848
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290848
    reference: chr 5
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.830G>A
  hgvsp: ENSP00000430293.1:p.Gly277Glu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3302G>A
  hgvsp: ENSP00000347375.3:p.Gly1101Glu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2056G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.776G>A
  hgvsp: ENSP00000401585.2:p.Gly259Glu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3353G>A
  hgvsp: ENSP00000349291.3:p.Gly1118Glu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1853G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1250G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1631G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.481G>A
  hgvsp: ENSP00000428724.1:p.Gly161Glu
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7584
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly1118Glu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

5-179290849-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290849
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290849
    reference: chr 5
allele count: 9
allele frequency: 7.445769975346228e-5
allele num: 120874
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2055G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1852G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.480G>C
  hgvsp: ENSP00000428724.1:p.Gly161Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3352G>C
  hgvsp: ENSP00000349291.3:p.Gly1118Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3301G>C
  hgvsp: ENSP00000347375.3:p.Gly1101Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.775G>C
  hgvsp: ENSP00000401585.2:p.Gly259Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.829G>C
  hgvsp: ENSP00000430293.1:p.Gly277Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1630G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1251G>C
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9026
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32009
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14702
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly1118Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

5-179290849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290849
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290849
    reference: chr 5
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1852G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.775G>A
  hgvsp: ENSP00000401585.2:p.Gly259Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3352G>A
  hgvsp: ENSP00000349291.3:p.Gly1118Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.480G>A
  hgvsp: ENSP00000428724.1:p.Gly161Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2055G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3301G>A
  hgvsp: ENSP00000347375.3:p.Gly1101Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1630G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.829G>A
  hgvsp: ENSP00000430293.1:p.Gly277Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1251G>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly1118Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

5-179290850-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290850
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290850
    reference: chr 5
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3300C>T
  hgvsp: ENST00000355235.3:c.3300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.774C>T
  hgvsp: ENST00000444477.2:c.774C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1252C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.479C>T
  hgvsp: ENST00000524222.1:c.479C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1851C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1629C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2054C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.828C>T
  hgvsp: ENST00000519746.1:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3351C>T
  hgvsp: ENST00000356834.3:c.3351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu1117Leu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

5-179290854-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290854
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290854
    reference: chr 5
allele count: 2
allele frequency: 1.654451301225948e-5
allele num: 120886
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3296A>G
  hgvsp: ENSP00000347375.3:p.His1099Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.824A>G
  hgvsp: ENSP00000430293.1:p.His275Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.475A>G
  hgvsp: ENSP00000428724.1:p.His159Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1256A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1625A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1847A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2050A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.770A>G
  hgvsp: ENSP00000401585.2:p.His257Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3347A>G
  hgvsp: ENSP00000349291.3:p.His1116Arg
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His1116Arg
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

5-179290864-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290864
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290864
    reference: chr 5
allele count: 2
allele frequency: 1.655601728448204e-5
allele num: 120802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.760G>A
  hgvsp: ENSP00000401585.2:p.Gly254Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2040G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3286G>A
  hgvsp: ENSP00000347375.3:p.Gly1096Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1266G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1615G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.814G>A
  hgvsp: ENSP00000430293.1:p.Gly272Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.465G>A
  hgvsp: ENSP00000428724.1:p.Gly156Arg
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1837G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3337G>A
  hgvsp: ENSP00000349291.3:p.Gly1113Arg
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly1113Arg
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

5-179290865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290865
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290865
    reference: chr 5
allele count: 2
allele frequency: 1.655574318731168e-5
allele num: 120804
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3336C>T
  hgvsp: ENST00000356834.3:c.3336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.464C>T
  hgvsp: ENST00000524222.1:c.464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2039C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1836C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1614C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3285C>T
  hgvsp: ENST00000355235.3:c.3285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.759C>T
  hgvsp: ENST00000444477.2:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.813C>T
  hgvsp: ENST00000519746.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1267C>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly1112Gly
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

5-179290870-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290870
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290870
    reference: chr 5
allele count: 121
allele frequency: 1.001804904704343e-3
allele num: 120782
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1831G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1609G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1272G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.754G>C
  hgvsp: ENSP00000401585.2:p.Ala252Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2034G>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3280G>C
  hgvsp: ENSP00000347375.3:p.Ala1094Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.808G>C
  hgvsp: ENSP00000430293.1:p.Ala270Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3331G>C
  hgvsp: ENSP00000349291.3:p.Ala1111Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.459G>C
  hgvsp: ENSP00000428724.1:p.Ala154Pro
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8888
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14972
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala1111Pro
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

5-179290874-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290874
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290874
    reference: chr 5
allele count: 1
allele frequency: 8.278831029058698e-6
allele num: 120790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3276C>T
  hgvsp: ENST00000355235.3:c.3276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.804C>T
  hgvsp: ENST00000519746.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1276C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3327C>T
  hgvsp: ENST00000356834.3:c.3327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2030C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.750C>T
  hgvsp: ENST00000444477.2:c.750C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1605C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.455C>T
  hgvsp: ENST00000524222.1:c.455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1827C>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala1109Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

5-179290877-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290877
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290877
    reference: chr 5
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1824A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3324A>G
  hgvsp: ENST00000356834.3:c.3324A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2027A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3273A>G
  hgvsp: ENST00000355235.3:c.3273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.452A>G
  hgvsp: ENST00000524222.1:c.452A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1602A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1279A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.801A>G
  hgvsp: ENST00000519746.1:c.801A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.747A>G
  hgvsp: ENST00000444477.2:c.747A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln1108Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

5-179290881-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290881
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290881
    reference: chr 5
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.448C>T
  hgvsp: ENSP00000428724.1:p.Pro150Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3269C>T
  hgvsp: ENSP00000347375.3:p.Pro1090Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.743C>T
  hgvsp: ENSP00000401585.2:p.Pro248Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2023C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1820C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.797C>T
  hgvsp: ENSP00000430293.1:p.Pro266Leu
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1283C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1598C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3320C>T
  hgvsp: ENSP00000349291.3:p.Pro1107Leu
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro1107Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

5-179290889-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290889
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290889
    reference: chr 5
allele count: 27
allele frequency: 2.235987809725719e-4
allele num: 120752
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3312A>G
  hgvsp: ENST00000356834.3:c.3312A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1812A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1590A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3261A>G
  hgvsp: ENST00000355235.3:c.3261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.735A>G
  hgvsp: ENST00000444477.2:c.735A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1291A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2015A>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.440A>G
  hgvsp: ENST00000524222.1:c.440A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.789A>G
  hgvsp: ENST00000519746.1:c.789A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8813
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala1104Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

5-179290890-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290890
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290890
    reference: chr 5
allele count: 512
allele frequency: 4.240025175149477e-3
allele num: 120754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.439C>T
  hgvsp: ENSP00000428724.1:p.Ala147Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.788C>T
  hgvsp: ENSP00000430293.1:p.Ala263Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1292C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2014C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3260C>T
  hgvsp: ENSP00000347375.3:p.Ala1087Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.734C>T
  hgvsp: ENSP00000401585.2:p.Ala245Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3311C>T
  hgvsp: ENSP00000349291.3:p.Ala1104Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1811C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1589C>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 31995
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 15200
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala1104Val
num of homozygotes: 20
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

5-179290893-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290893
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290893
    reference: chr 5
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.731C>G
  hgvsp: ENSP00000401585.2:p.Ala244Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3257C>G
  hgvsp: ENSP00000347375.3:p.Ala1086Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2011C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1586C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.436C>G
  hgvsp: ENSP00000428724.1:p.Ala146Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.785C>G
  hgvsp: ENSP00000430293.1:p.Ala262Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1295C>G
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3308C>G
  hgvsp: ENSP00000349291.3:p.Ala1103Gly
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1808C>G
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala1103Gly
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

5-179290894-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290894
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290894
    reference: chr 5
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.784G>A
  hgvsp: ENSP00000430293.1:p.Ala262Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3256G>A
  hgvsp: ENSP00000347375.3:p.Ala1086Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1807G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2010G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.730G>A
  hgvsp: ENSP00000401585.2:p.Ala244Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1585G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.435G>A
  hgvsp: ENSP00000428724.1:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1296G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3307G>A
  hgvsp: ENSP00000349291.3:p.Ala1103Thr
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala1103Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

5-179290898-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290898
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290898
    reference: chr 5
allele count: 2
allele frequency: 1.655793621882969e-5
allele num: 120788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1300C>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1803C>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1581C>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2006C>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.726C>A
  hgvsp: ENST00000444477.2:c.726C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3303C>A
  hgvsp: ENST00000356834.3:c.3303C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3252C>A
  hgvsp: ENST00000355235.3:c.3252C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.431C>A
  hgvsp: ENST00000524222.1:c.431C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.780C>A
  hgvsp: ENST00000519746.1:c.780C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro1101Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

5-179290900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290900
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290900
    reference: chr 5
allele count: 2
allele frequency: 1.655958137378287e-5
allele num: 120776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1302C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3301C>T
  hgvsp: ENSP00000349291.3:p.Pro1101Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.724C>T
  hgvsp: ENSP00000401585.2:p.Pro242Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1801C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.2004C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.778C>T
  hgvsp: ENSP00000430293.1:p.Pro260Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.429C>T
  hgvsp: ENSP00000428724.1:p.Pro144Ser
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1579C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3250C>T
  hgvsp: ENSP00000347375.3:p.Pro1084Ser
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro1101Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

5-179290914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290914
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290914
    reference: chr 5
allele count: 4
allele frequency: 3.31087456751701e-5
allele num: 120814
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3287C>T
  hgvsp: ENSP00000349291.3:p.Ala1096Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.764C>T
  hgvsp: ENSP00000430293.1:p.Ala255Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3236C>T
  hgvsp: ENSP00000347375.3:p.Ala1079Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.415C>T
  hgvsp: ENSP00000428724.1:p.Ala139Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.1990C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.710C>T
  hgvsp: ENSP00000401585.2:p.Ala237Val
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1787C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1316C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1565C>T
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1096Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-179290918-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290918
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290918
    reference: chr 5
allele count: 8
allele frequency: 6.62174913503402e-5
allele num: 120814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.411G>A
  hgvsp: ENSP00000428724.1:p.Ala138Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3232G>A
  hgvsp: ENSP00000347375.3:p.Ala1078Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1561G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1783G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.760G>A
  hgvsp: ENSP00000430293.1:p.Ala254Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3283G>A
  hgvsp: ENSP00000349291.3:p.Ala1095Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.706G>A
  hgvsp: ENSP00000401585.2:p.Ala236Thr
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1320G>A
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.1986G>A
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala1095Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-179290919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290919
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290919
    reference: chr 5
allele count: 4
allele frequency: 3.310052629836815e-5
allele num: 120844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.410C>T
  hgvsp: ENST00000524222.1:c.410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1782C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.1985C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3282C>T
  hgvsp: ENST00000356834.3:c.3282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.705C>T
  hgvsp: ENST00000444477.2:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1560C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.759C>T
  hgvsp: ENST00000519746.1:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1321C>T
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3231C>T
  hgvsp: ENST00000355235.3:c.3231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp1094Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

5-179290925-ATGCAGTTCGGGTGCTGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290925
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290908
    reference: chr 5
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsp: ENSP00000347375.3:p.Pro1070SerfsTer53
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsp: ENSP00000428724.1:p.Pro130SerfsTer53
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsp: ENSP00000401585.2:p.Pro228SerfsTer53
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsp: ENSP00000430293.1:p.Pro246SerfsTer53
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsp: ENSP00000349291.3:p.Pro1087SerfsTer53
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro1087SerfsTer53
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: ATGCAGTTCGGGTGCTGG
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

5-179290929-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179290929
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179290929
    reference: chr 5
allele count: 2
allele frequency: 1.654396558855158e-5
allele num: 120890
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000349291
  ensembl transcript: ENST00000356834
  gene symbol: TBC1D9B
  hgvsc: ENST00000356834.3:c.3272T>C
  hgvsp: ENSP00000349291.3:p.Leu1091Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428441
  ensembl transcript: ENST00000522472
  gene symbol: TBC1D9B
  hgvsc: ENST00000522472.1:c.443-1331T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000428724
  ensembl transcript: ENST00000524222
  gene symbol: TBC1D9B
  hgvsc: ENST00000524222.1:c.400T>C
  hgvsp: ENSP00000428724.1:p.Leu134Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000347375
  ensembl transcript: ENST00000355235
  gene symbol: TBC1D9B
  hgvsc: ENST00000355235.3:c.3221T>C
  hgvsp: ENSP00000347375.3:p.Leu1074Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000520794
  gene symbol: TBC1D9B
  hgvsc: ENST00000520794.1:n.1772T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000521469
  gene symbol: TBC1D9B
  hgvsc: ENST00000521469.1:n.1550T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000401585
  ensembl transcript: ENST00000444477
  gene symbol: TBC1D9B
  hgvsc: ENST00000444477.2:c.695T>C
  hgvsp: ENSP00000401585.2:p.Leu232Pro
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000197226
  ensembl transcript: ENST00000518085
  gene symbol: TBC1D9B
  hgvsc: ENST00000518085.1:n.1975T>C
  variant of: http://identifiers.org/hgnc/29097
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197226
  ensembl protein: ENSP00000430293
  ensembl transcript: ENST00000519746
  gene symbol: TBC1D9B
  hgvsc: ENST00000519746.1:c.749T>C
  hgvsp: ENSP00000430293.1:p.Leu250Pro
  variant of: http://identifiers.org/hgnc/29097
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Leu1091Pro
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 184
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2918
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7096
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2330
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507249871883761e-5
allele num: 66346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.869484e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

MQRankSum
type: SiteQuality
SIO_000300: -1.54e0

FS
type: SiteQuality
SIO_000300: 8.795e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.355e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.237e0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2330
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2921
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23200
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506931886678722e-5
allele num: 66360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

QD
type: SiteQuality
SIO_000300: 1.406e1

DP
type: SiteQuality
SIO_000300: 1.869782e6

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.96e-1

FS
type: SiteQuality
SIO_000300: 4.862e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.29e0

GenotypeQuality
all individuals: 4009
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 9

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.451241671714113e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.481e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 1.282e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.870497e6

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.012592637223595e-5
allele num: 66388
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.462e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.855e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.344e1

DP
type: SiteQuality
SIO_000300: 1.870482e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506477854775535e-5
allele num: 66380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

FS
type: SiteQuality
SIO_000300: 5.0e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e-1

QD
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SIO_000300: 1.139e1

DP
type: SiteQuality
SIO_000300: 1.870396e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.356e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 13

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.531708492754496e-5
allele num: 66386
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.077155824508321e-4
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.153e0

MQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.396e1

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.315e0

DP
type: SiteQuality
SIO_000300: 1.871172e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 1.871267e6

MQ
type: SiteQuality
SIO_000300: 5.927e1

FS
type: SiteQuality
SIO_000300: 2.289e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.519433564326604e-5
allele num: 66380
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 1.871521e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.25e0

FS
type: SiteQuality
SIO_000300: 3.233e0

VQSLOD
type: SiteQuality
SIO_000300: 9.74e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422774076317383e-4
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.904725019364833e-4
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.872174e6

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.262e1

MQRankSum
type: SiteQuality
SIO_000300: 6.41e-1

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.936483346243222e-4
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012683397101799e-5
allele num: 66386
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

Other
type: Population
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allele num: 906
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.95e-1

QD
type: SiteQuality
SIO_000300: 1.324e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.872855e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7103
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GenotypeQuality
all individuals: 149
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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African
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allele frequency: 1.935359009096187e-4
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East Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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allele frequency: 0.0e0
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African
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allele num: 10336
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Other
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South Asian
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FS
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 66400
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African
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BaseQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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Other
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QD
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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FS
type: SiteQuality
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66436
num of homozygotes: 0

European (Finnish)
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South Asian
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East Asian
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African
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Latino
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Other
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Latino
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South Asian
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African
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Other
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European (Non-Finnish)
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allele frequency: 6.02101333654454e-5
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East Asian
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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Latino
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South Asian
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ReadPosRankSum
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FS
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VQSLOD
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MQ
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DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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Other
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South Asian
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African
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East Asian
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European (Finnish)
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BaseQRankSum
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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DP
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SIO_000300: 1.878226e6

ClippingRankSum
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SIO_000300: -1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.15e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504845602841149e-5
allele num: 66452
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

QD
type: SiteQuality
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MQ
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SIO_000300: 5.972e1

MQRankSum
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SIO_000300: 1.25e-1

VQSLOD
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InbreedingCoeff
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SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 1.878591e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.05e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
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MQ
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QD
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MQRankSum
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SIO_000300: 1.99e-1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.87845e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.382e0

VQSLOD
type: SiteQuality
SIO_000300: -8.110000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.66183574879227e-5
allele num: 10350
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Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

DP
type: SiteQuality
SIO_000300: 1.878285e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e0

InbreedingCoeff
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SIO_000300: -3.0e-4

MQ
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SIO_000300: 5.866e1

BaseQRankSum
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SIO_000300: -6.01e-1

ClippingRankSum
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SIO_000300: -1.835e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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VQSLOD
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SIO_000300: -2.386e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -3.0e-4

ClippingRankSum
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ReadPosRankSum
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SIO_000300: -4.47e-1

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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QD
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.878263e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66444
num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.27344292660338e-3
allele num: 8638
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Other
type: Population
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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DP
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 6.91323885240235e-4
allele num: 11572
num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQ
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ClippingRankSum
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BaseQRankSum
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QD
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FS
type: SiteQuality
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10346
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European (Finnish)
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South Asian
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allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66422
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Latino
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Other
type: Population
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DP
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.983e1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 21

European (Non-Finnish)
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allele count: 20
allele frequency: 3.010778587342687e-4
allele num: 66428
num of homozygotes: 0

European (Finnish)
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South Asian
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East Asian
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Latino
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African
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Other
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VQSLOD
type: SiteQuality
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QD
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DP
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BaseQRankSum
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11904
bin: 9.75e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.933861922258751e-4
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.184929139301763e-4
allele num: 11572
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.16e-1

FS
type: SiteQuality
SIO_000300: 1.102e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 1.878759e6

QD
type: SiteQuality
SIO_000300: 1.531e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22942
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.655928223038478e-4
allele num: 66428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.99e0

QD
type: SiteQuality
SIO_000300: 1.29e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.67e-1

DP
type: SiteQuality
SIO_000300: 1.88223e6

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 21

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4686
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variant carriers: 0

GenotypeQuality
all individuals: 22942
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.860239657975553e-4
allele num: 66428
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.932740626207963e-4
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.29e1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

DP
type: SiteQuality
SIO_000300: 1.88223e6

VQSLOD
type: SiteQuality
SIO_000300: 4.99e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

GenotypeQuality
all individuals: 2330
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505525277769414e-5
allele num: 66422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.988e1

DP
type: SiteQuality
SIO_000300: 1.881309e6

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

FS
type: SiteQuality
SIO_000300: 4.048e0

QD
type: SiteQuality
SIO_000300: 1.324e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.058e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 421
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GenotypeQuality
all individuals: 11925
bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 1
allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

QD
type: SiteQuality
SIO_000300: 1.324e1

MQ
type: SiteQuality
SIO_000300: 5.988e1

FS
type: SiteQuality
SIO_000300: 4.048e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.058e0

DP
type: SiteQuality
SIO_000300: 1.881309e6

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 7.25e1
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 18
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 182
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506841058405159e-5
allele num: 66364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.881176e6

MQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 8.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.23e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 3548
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.880864e6

FS
type: SiteQuality
SIO_000300: 3.377e0

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.675e0

MQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.05e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 3540
bin: 7.25e1
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GenotypeQuality
all individuals: 186
bin: 3.75e1
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GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31535077564251e-4
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

FS
type: SiteQuality
SIO_000300: 1.105e0

QD
type: SiteQuality
SIO_000300: 1.104e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.193e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.49e-1

DP
type: SiteQuality
SIO_000300: 1.893846e6

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 189
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GenotypeQuality
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GenotypeQuality
all individuals: 22552
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GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 263
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GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 424
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GenotypeQuality
all individuals: 4019
bin: 8.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 2906
bin: 9.25e1
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GenotypeQuality
all individuals: 7076
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4664
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 126
allele frequency: 1.89753320683112e-3
allele num: 66402
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 1.468809400380162e-3
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.029928510844541e-3
allele num: 16506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.49e-1

QD
type: SiteQuality
SIO_000300: 1.104e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.193e0

DP
type: SiteQuality
SIO_000300: 1.893846e6

FS
type: SiteQuality
SIO_000300: 1.105e0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4020
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011503945070168e-5
allele num: 66412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.708e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.893473e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

QD
type: SiteQuality
SIO_000300: 1.115e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

FS
type: SiteQuality
SIO_000300: 4.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.265e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.893762e6

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

QD
type: SiteQuality
SIO_000300: 1.446e1

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22695
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505706628120577e-5
allele num: 66414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.265e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

DP
type: SiteQuality
SIO_000300: 1.893762e6

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.64e-1

QD
type: SiteQuality
SIO_000300: 1.446e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

GenotypeQuality
all individuals: 432
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7095
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.348e1

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 7.522e0

DP
type: SiteQuality
SIO_000300: 1.893486e6

GenotypeQuality
all individuals: 238
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.46e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 1.716e0

DP
type: SiteQuality
SIO_000300: 1.893537e6

QD
type: SiteQuality
SIO_000300: 1.302e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7094
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505978735580254e-5
allele num: 66402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 1.716e0

QD
type: SiteQuality
SIO_000300: 1.302e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.46e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.893537e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.475e0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 2.900232018561485e-4
allele num: 10344
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66400
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.894077e6

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7080
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.25e1
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GenotypeQuality
all individuals: 223
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4040
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2342
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 3.75e1
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GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22121
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4674
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012683397101799e-5
allele num: 66386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.459e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

FS
type: SiteQuality
SIO_000300: 1.171e0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e-1

DP
type: SiteQuality
SIO_000300: 1.894486e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 172
bin: 4.25e1
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GenotypeQuality
all individuals: 3551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 5.25e1
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GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12060
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4043
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 1.896299e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.92e-1

QD
type: SiteQuality
SIO_000300: 1.147e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 301
bin: 8.25e1
variant carriers: 188

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 11

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 183
bin: 2.25e1
variant carriers: 23

GenotypeQuality
all individuals: 46170
bin: 9.75e1
variant carriers: 45925

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 52

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 61

GenotypeQuality
all individuals: 402
bin: 7.75e1
variant carriers: 162

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 226

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 134

GenotypeQuality
all individuals: 446
bin: 7.25e1
variant carriers: 94

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 27

GenotypeQuality
all individuals: 10446
bin: 6.25e1
variant carriers: 123

GenotypeQuality
all individuals: 1651
bin: 6.75e1
variant carriers: 153

European (Non-Finnish)
type: Population
allele count: 31876
allele frequency: 4.794392804500195e-1
allele num: 66486
num of homozygotes: 7616

European (Finnish)
type: Population
allele count: 3584
allele frequency: 5.423728813559322e-1
allele num: 6608
num of homozygotes: 993

Other
type: Population
allele count: 498
allele frequency: 5.508849557522124e-1
allele num: 904
num of homozygotes: 135

East Asian
type: Population
allele count: 6609
allele frequency: 7.658169177288529e-1
allele num: 8630
num of homozygotes: 2531

Latino
type: Population
allele count: 8796
allele frequency: 7.599792638672888e-1
allele num: 11574
num of homozygotes: 3402

African
type: Population
allele count: 4654
allele frequency: 4.498356852890006e-1
allele num: 10346
num of homozygotes: 1072

South Asian
type: Population
allele count: 10154
allele frequency: 6.159165352420235e-1
allele num: 16486
num of homozygotes: 3176

VQSLOD
type: SiteQuality
SIO_000300: 4.94e0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.315e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 6.382941e6

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
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GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 220
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variant carriers: 0

GenotypeQuality
all individuals: 119
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GenotypeQuality
all individuals: 254
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GenotypeQuality
all individuals: 1765
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GenotypeQuality
all individuals: 809
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variant carriers: 0

GenotypeQuality
all individuals: 277
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variant carriers: 0

GenotypeQuality
all individuals: 488
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variant carriers: 0

GenotypeQuality
all individuals: 44034
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7598
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.941230911614993e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.386e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.092e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.721216e6

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
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variant carriers: 0

GenotypeQuality
all individuals: 806
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variant carriers: 0

GenotypeQuality
all individuals: 161
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GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 1760
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variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 44027
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GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 254
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variant carriers: 0

GenotypeQuality
all individuals: 232
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variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.720165e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.577e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.74e0

FS
type: SiteQuality
SIO_000300: 1.251e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

MQ
type: SiteQuality
SIO_000300: 5.986e1

VQSLOD
type: SiteQuality
SIO_000300: 5.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7578
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.471789883268483e-4
allele num: 16448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66358
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

FS
type: SiteQuality
SIO_000300: 1.753e0

DP
type: SiteQuality
SIO_000300: 1.719977e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

QD
type: SiteQuality
SIO_000300: 1.453e1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
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GenotypeQuality
all individuals: 2116
bin: 9.75e1
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GenotypeQuality
all individuals: 132
bin: 5.75e1
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GenotypeQuality
all individuals: 287
bin: 3.25e1
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GenotypeQuality
all individuals: 1830
bin: 7.25e1
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 793
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GenotypeQuality
all individuals: 7578
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506977304921788e-5
allele num: 66358
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

FS
type: SiteQuality
SIO_000300: 1.753e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 1.719977e6

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
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GenotypeQuality
all individuals: 212
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GenotypeQuality
all individuals: 1824
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GenotypeQuality
all individuals: 791
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 7580
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 214
bin: 4.75e1
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GenotypeQuality
all individuals: 44242
bin: 6.25e1
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GenotypeQuality
all individuals: 1746
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.25e1
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GenotypeQuality
all individuals: 162
bin: 4.25e1
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GenotypeQuality
all individuals: 280
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.718968e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

QD
type: SiteQuality
SIO_000300: 1.615e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.26e-1

FS
type: SiteQuality
SIO_000300: 5.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

GenotypeQuality
all individuals: 1818
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.75e1
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GenotypeQuality
all individuals: 237
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.25e1
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GenotypeQuality
all individuals: 44288
bin: 6.25e1
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GenotypeQuality
all individuals: 66
bin: 5.75e1
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GenotypeQuality
all individuals: 231
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7564
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507068149621726e-5
allele num: 66354
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 3.206e0

QD
type: SiteQuality
SIO_000300: 1.471e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

DP
type: SiteQuality
SIO_000300: 1.718003e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508978421608571e-5
allele num: 66270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.358e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 1.715837e6

QD
type: SiteQuality
SIO_000300: 2.713e1

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7479
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66274
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

FS
type: SiteQuality
SIO_000300: 4.043e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

DP
type: SiteQuality
SIO_000300: 1.715398e6

QD
type: SiteQuality
SIO_000300: 1.254e1

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 121

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 161
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variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.935733643050716e-4
allele num: 10332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 42
allele frequency: 6.350166313879649e-3
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 76
allele frequency: 1.146927441748159e-3
allele num: 66264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

DP
type: SiteQuality
SIO_000300: 1.716137e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.265e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e-1

QD
type: SiteQuality
SIO_000300: 1.494e1

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 769
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variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7479
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50934283213089e-5
allele num: 66254
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.828e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.53e-1

QD
type: SiteQuality
SIO_000300: 2.318e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

FS
type: SiteQuality
SIO_000300: 8.698e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 1.703651e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 188
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GenotypeQuality
all individuals: 1966
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.703212e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

QD
type: SiteQuality
SIO_000300: 1.472e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.987e1

VQSLOD
type: SiteQuality
SIO_000300: 4.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.07e-1

FS
type: SiteQuality
SIO_000300: 1.185e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.51e0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 523
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variant carriers: 0

GenotypeQuality
all individuals: 252
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GenotypeQuality
all individuals: 1778
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: -1.749e0

QD
type: SiteQuality
SIO_000300: 2.751e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 2.961e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.451e0

DP
type: SiteQuality
SIO_000300: 1.702643e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-1

GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1972
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 1783
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510072181450273e-5
allele num: 66222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 2.226093689508324e-3
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592464569650881e-4
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

QD
type: SiteQuality
SIO_000300: 1.203e1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

DP
type: SiteQuality
SIO_000300: 1.704415e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

GenotypeQuality
all individuals: 205
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44569
bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2025
bin: 9.75e1
variant carriers: 489

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.056986681967807e-4
allele num: 66226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

African
type: Population
allele count: 473
allele frequency: 4.578010065814944e-2
allele num: 10332
num of homozygotes: 20

Latino
type: Population
allele count: 30
allele frequency: 2.592464569650882e-3
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.217294900221729e-3
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.62e0

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

DP
type: SiteQuality
SIO_000300: 1.706784e6

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 5.39e-2

BaseQRankSum
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SIO_000300: -3.993e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66230
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 9.676795045480937e-5
allele num: 10334
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FS
type: SiteQuality
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BaseQRankSum
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QD
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MQRankSum
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SIO_000300: 9.82e-1

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

VQSLOD
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.666347e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.509798592867711e-5
allele num: 66234
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 4.584e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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DP
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MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.019232511095679e-5
allele num: 66242
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.741e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 9.25e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.667638e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.386e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66238
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31535077564251e-4
allele num: 8638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.295e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

FS
type: SiteQuality
SIO_000300: 2.082e0

DP
type: SiteQuality
SIO_000300: 1.667695e6

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 4
allele frequency: 4.628558204119417e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.376e0

MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509069507741527e-5
allele num: 66266
num of homozygotes: 0

Latino
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East Asian
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allele frequency: 1.157139551029854e-4
allele num: 8642
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European (Finnish)
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African
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allele frequency: 4.835589941972921e-4
allele num: 10340
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Other
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MQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66280
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Latino
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African
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South Asian
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East Asian
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European (Finnish)
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allele num: 6612
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Other
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InbreedingCoeff
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MQ
type: SiteQuality
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ReadPosRankSum
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QD
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BaseQRankSum
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MQRankSum
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FS
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DP
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Finnish)
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Latino
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Other
type: Population
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.507977199384745e-5
allele num: 66314
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QD
type: SiteQuality
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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DP
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