10-98994988-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98994988
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98994988
    reference: chr 10
allele count: 9
allele frequency: 7.413875479842496e-5
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1270A>C
  hgvsp: ENSP00000351333.4:p.Ser424Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1183A>C
  hgvsp: ENSP00000351058.3:p.Ser395Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1243A>C
  hgvsp: ENSP00000347526.5:p.Ser415Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*459A>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1270A>C
  hgvsp: ENSP00000414774.2:p.Ser424Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1270A>C
  hgvsp: ENSP00000324468.8:p.Ser424Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1243A>C
  hgvsp: ENSP00000360066.1:p.Ser415Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1270A>C
  hgvsp: ENSP00000473567.1:p.Ser424Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.396A>C
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13980
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser424Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

10-98994989-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98994989
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98994989
    reference: chr 10
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1269C>T
  hgvsp: ENST00000358531.4:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.395C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1182C>T
  hgvsp: ENST00000358308.3:c.1182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*458C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1269C>T
  hgvsp: ENST00000479633.2:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1269C>T
  hgvsp: ENST00000316676.8:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1242C>T
  hgvsp: ENST00000355366.5:c.1242C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1269C>T
  hgvsp: ENST00000453547.2:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1242C>T
  hgvsp: ENST00000371027.1:c.1242C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13975
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe423Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/10-98994994-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98994994
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98994994
    reference: chr 10
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1264T>G
  hgvsp: ENSP00000324468.8:p.Ser422Ala
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.390T>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*453T>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1237T>G
  hgvsp: ENSP00000360066.1:p.Ser413Ala
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1264T>G
  hgvsp: ENSP00000351333.4:p.Ser422Ala
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1264T>G
  hgvsp: ENSP00000414774.2:p.Ser422Ala
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1237T>G
  hgvsp: ENSP00000347526.5:p.Ser413Ala
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1264T>G
  hgvsp: ENSP00000473567.1:p.Ser422Ala
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1177T>G
  hgvsp: ENSP00000351058.3:p.Ser393Ala
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser422Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

10-98994996-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98994996
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98994996
    reference: chr 10
allele count: 7
allele frequency: 5.766252594813668e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1235G>A
  hgvsp: ENSP00000360066.1:p.Arg412His
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1262G>A
  hgvsp: ENSP00000324468.8:p.Arg421His
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1262G>A
  hgvsp: ENSP00000351333.4:p.Arg421His
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*451G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1235G>A
  hgvsp: ENSP00000347526.5:p.Arg412His
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1175G>A
  hgvsp: ENSP00000351058.3:p.Arg392His
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1262G>A
  hgvsp: ENSP00000473567.1:p.Arg421His
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.388G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1262G>A
  hgvsp: ENSP00000414774.2:p.Arg421His
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13980
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg421His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

10-98994997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98994997
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98994997
    reference: chr 10
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1261C>T
  hgvsp: ENSP00000414774.2:p.Arg421Cys
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*450C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1234C>T
  hgvsp: ENSP00000360066.1:p.Arg412Cys
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.387C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1261C>T
  hgvsp: ENSP00000473567.1:p.Arg421Cys
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1261C>T
  hgvsp: ENSP00000324468.8:p.Arg421Cys
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1234C>T
  hgvsp: ENSP00000347526.5:p.Arg412Cys
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1174C>T
  hgvsp: ENSP00000351058.3:p.Arg392Cys
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1261C>T
  hgvsp: ENSP00000351333.4:p.Arg421Cys
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg421Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

10-98994999-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98994999
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98994999
    reference: chr 10
allele count: 7
allele frequency: 5.766157597324503e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1259C>T
  hgvsp: ENSP00000324468.8:p.Ser420Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1232C>T
  hgvsp: ENSP00000360066.1:p.Ser411Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1259C>T
  hgvsp: ENSP00000473567.1:p.Ser420Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1259C>T
  hgvsp: ENSP00000351333.4:p.Ser420Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*448C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1172C>T
  hgvsp: ENSP00000351058.3:p.Ser391Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.385C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1259C>T
  hgvsp: ENSP00000414774.2:p.Ser420Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1232C>T
  hgvsp: ENSP00000347526.5:p.Ser411Leu
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10368
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser420Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

10-98994999-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98994999
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98994999
    reference: chr 10
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1172C>G
  hgvsp: ENSP00000351058.3:p.Ser391Trp
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*448C>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1259C>G
  hgvsp: ENSP00000351333.4:p.Ser420Trp
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1259C>G
  hgvsp: ENSP00000473567.1:p.Ser420Trp
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1232C>G
  hgvsp: ENSP00000360066.1:p.Ser411Trp
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1259C>G
  hgvsp: ENSP00000324468.8:p.Ser420Trp
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1232C>G
  hgvsp: ENSP00000347526.5:p.Ser411Trp
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1259C>G
  hgvsp: ENSP00000414774.2:p.Ser420Trp
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.385C>G
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser420Trp
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-98995002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995002
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995002
    reference: chr 10
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*445G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1256G>A
  hgvsp: ENSP00000351333.4:p.Arg419His
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.382G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1229G>A
  hgvsp: ENSP00000347526.5:p.Arg410His
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1169G>A
  hgvsp: ENSP00000351058.3:p.Arg390His
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1256G>A
  hgvsp: ENSP00000324468.8:p.Arg419His
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1256G>A
  hgvsp: ENSP00000473567.1:p.Arg419His
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1229G>A
  hgvsp: ENSP00000360066.1:p.Arg410His
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1256G>A
  hgvsp: ENSP00000414774.2:p.Arg419His
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13969
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10374
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg419His
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

10-98995015-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995015
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995015
    reference: chr 10
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1243C>T
  hgvsp: ENSP00000351333.4:p.Gln415Ter
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1156C>T
  hgvsp: ENSP00000351058.3:p.Gln386Ter
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1243C>T
  hgvsp: ENSP00000473567.1:p.Gln415Ter
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1243C>T
  hgvsp: ENSP00000324468.8:p.Gln415Ter
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1243C>T
  hgvsp: ENSP00000414774.2:p.Gln415Ter
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*432C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1216C>T
  hgvsp: ENSP00000347526.5:p.Gln406Ter
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1216C>T
  hgvsp: ENSP00000360066.1:p.Gln406Ter
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.369C>T
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13971
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8562
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln415Ter
num of homozygotes: 1
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

10-98995015-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995015
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995015
    reference: chr 10
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*432C>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1243C>G
  hgvsp: ENSP00000351333.4:p.Gln415Glu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1243C>G
  hgvsp: ENSP00000473567.1:p.Gln415Glu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1243C>G
  hgvsp: ENSP00000414774.2:p.Gln415Glu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1243C>G
  hgvsp: ENSP00000324468.8:p.Gln415Glu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1156C>G
  hgvsp: ENSP00000351058.3:p.Gln386Glu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.369C>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1216C>G
  hgvsp: ENSP00000360066.1:p.Gln406Glu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1216C>G
  hgvsp: ENSP00000347526.5:p.Gln406Glu
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13971
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln415Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

10-98995022-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995022
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995022
    reference: chr 10
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1149C>T
  hgvsp: ENST00000358308.3:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1209C>T
  hgvsp: ENST00000355366.5:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1236C>T
  hgvsp: ENST00000453547.2:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1236C>T
  hgvsp: ENST00000479633.2:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1236C>T
  hgvsp: ENST00000358531.4:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*425C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.362C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1209C>T
  hgvsp: ENST00000371027.1:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1236C>T
  hgvsp: ENST00000316676.8:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13968
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser412Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/10-98995038-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995038
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995038
    reference: chr 10
allele count: 4
allele frequency: 3.295055768818887e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1133G>T
  hgvsp: ENSP00000351058.3:p.Arg378Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1220G>T
  hgvsp: ENSP00000324468.8:p.Arg407Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1220G>T
  hgvsp: ENSP00000473567.1:p.Arg407Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1220G>T
  hgvsp: ENSP00000351333.4:p.Arg407Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.346G>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1220G>T
  hgvsp: ENSP00000414774.2:p.Arg407Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1193G>T
  hgvsp: ENSP00000360066.1:p.Arg398Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1193G>T
  hgvsp: ENSP00000347526.5:p.Arg398Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*409G>T
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13970
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34743
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Arg407Leu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP

10-98995038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995038
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995038
    reference: chr 10
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1193G>A
  hgvsp: ENSP00000347526.5:p.Arg398Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1193G>A
  hgvsp: ENSP00000360066.1:p.Arg398Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*409G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1220G>A
  hgvsp: ENSP00000351333.4:p.Arg407Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1220G>A
  hgvsp: ENSP00000324468.8:p.Arg407Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1220G>A
  hgvsp: ENSP00000473567.1:p.Arg407Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1133G>A
  hgvsp: ENSP00000351058.3:p.Arg378Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1220G>A
  hgvsp: ENSP00000414774.2:p.Arg407Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.346G>A
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13970
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg407Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-98995039-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995039
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995039
    reference: chr 10
allele count: 4
allele frequency: 3.295164346321773e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*408C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1132C>T
  hgvsp: ENSP00000351058.3:p.Arg378Ter
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1219C>T
  hgvsp: ENSP00000414774.2:p.Arg407Ter
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1219C>T
  hgvsp: ENSP00000351333.4:p.Arg407Ter
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1192C>T
  hgvsp: ENSP00000347526.5:p.Arg398Ter
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.345C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1219C>T
  hgvsp: ENSP00000473567.1:p.Arg407Ter
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1219C>T
  hgvsp: ENSP00000324468.8:p.Arg407Ter
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1192C>T
  hgvsp: ENSP00000360066.1:p.Arg398Ter
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13967
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg407Ter
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

10-98995061-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995061
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995061
    reference: chr 10
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*386A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1170A>G
  hgvsp: ENST00000371027.1:c.1170A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1197A>G
  hgvsp: ENST00000358531.4:c.1197A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.323A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1170A>G
  hgvsp: ENST00000355366.5:c.1170A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1197A>G
  hgvsp: ENST00000479633.2:c.1197A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1197A>G
  hgvsp: ENST00000453547.2:c.1197A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1197A>G
  hgvsp: ENST00000316676.8:c.1197A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1110A>G
  hgvsp: ENST00000358308.3:c.1110A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13967
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln399Gln
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

10-98995063-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995063
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995063
    reference: chr 10
allele count: 3
allele frequency: 2.472269378471478e-5
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1168C>G
  hgvsp: ENSP00000347526.5:p.Gln390Glu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1195C>G
  hgvsp: ENSP00000351333.4:p.Gln399Glu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1195C>G
  hgvsp: ENSP00000473567.1:p.Gln399Glu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1108C>G
  hgvsp: ENSP00000351058.3:p.Gln370Glu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1195C>G
  hgvsp: ENSP00000414774.2:p.Gln399Glu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1195C>G
  hgvsp: ENSP00000324468.8:p.Gln399Glu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1168C>G
  hgvsp: ENSP00000360066.1:p.Gln390Glu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.321C>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*384C>G
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13967
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln399Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

10-98995064-CTTAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995064
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995060
    reference: chr 10
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1190_1193delATAA
  hgvsp: ENSP00000414774.2:p.Asn397SerfsTer4
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1190_1193delATAA
  hgvsp: ENSP00000324468.8:p.Asn397SerfsTer4
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1163_1166delATAA
  hgvsp: ENSP00000360066.1:p.Asn388SerfsTer4
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1190_1193delATAA
  hgvsp: ENSP00000351333.4:p.Asn397SerfsTer4
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1190_1193delATAA
  hgvsp: ENSP00000473567.1:p.Asn397SerfsTer4
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.316_319delATAA
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1103_1106delATAA
  hgvsp: ENSP00000351058.3:p.Asn368SerfsTer4
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1163_1166delATAA
  hgvsp: ENSP00000347526.5:p.Asn388SerfsTer4
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*379_*382delATAA
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13965
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn397SerfsTer4
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: CTTAT
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

10-98995067-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995067
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995067
    reference: chr 10
allele count: 6
allele frequency: 4.945761482409575e-5
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1191T>C
  hgvsp: ENST00000453547.2:c.1191T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1191T>C
  hgvsp: ENST00000479633.2:c.1191T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1191T>C
  hgvsp: ENST00000358531.4:c.1191T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*380T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1191T>C
  hgvsp: ENST00000316676.8:c.1191T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1164T>C
  hgvsp: ENST00000355366.5:c.1164T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1104T>C
  hgvsp: ENST00000358308.3:c.1104T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1164T>C
  hgvsp: ENST00000371027.1:c.1164T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.317T>C
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13964
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34738
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn397Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

10-98995074-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995074
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995074
    reference: chr 10
allele count: 3
allele frequency: 2.473696362017217e-5
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1186-2A>T
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1186-2A>T
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1099-2A>T
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.312-2A>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1159-2A>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1186-2A>T
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*375-2A>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1186-2A>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1159-2A>T
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13960
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1186-2A>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

10-98995076-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995076
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995076
    reference: chr 10
allele count: 34223
allele frequency: 2.823167411855934e-1
allele num: 121222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.312-4T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1159-4T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1159-4T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1186-4T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1186-4T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1186-4T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1099-4T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1186-4T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*375-4T>C
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 8.25e1
  variant carriers: 2072
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 4.75e1
  variant carriers: 440
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 1087
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 7.25e1
  variant carriers: 1724
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 2.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 8.75e1
  variant carriers: 1921
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 6.75e1
  variant carriers: 1386
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 5.25e1
  variant carriers: 640
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 4.25e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 7.75e1
  variant carriers: 1779
genotype depth: GenotypeDepth
  all individuals: 14462
  bin: 9.75e1
  variant carriers: 14129
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 3.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 9.25e1
  variant carriers: 1968
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 5.75e1
  variant carriers: 864
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 3.75e1
  variant carriers: 277
genotype quality: GenotypeQuality
  all individuals: 9198
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 7.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 6.75e1
  variant carriers: 5
hgvs: c.1186-4T>C
num of homozygotes: 5077
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

10-98995093-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995093
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995093
    reference: chr 10
allele count: 25
allele frequency: 2.069707757264674e-4
allele num: 120790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.312-21G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1159-21G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1186-21G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*375-21G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1186-21G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1159-21G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1099-21G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1186-21G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1186-21G>A
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12587
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9668
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6966
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-98995113-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995113
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995113
    reference: chr 10
allele count: 2
allele frequency: 1.66461364317342e-5
allele num: 120148
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1186-41T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.312-41T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1159-41T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1186-41T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*375-41T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1186-41T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1186-41T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1099-41T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1159-41T>C
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

10-98995120-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995120
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995120
    reference: chr 10
allele count: 1
allele frequency: 8.354777261638205e-6
allele num: 119692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1186-48G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.312-48G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1159-48G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1186-48G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1186-48G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1186-48G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1099-48G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*375-48G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1159-48G>A
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18095
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5370
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

10-98995122-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 98995122
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 98995122
    reference: chr 10
allele count: 5
allele frequency: 4.185851820845542e-5
allele num: 119450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*375-50G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1186-50G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1186-50G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.312-50G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1099-50G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1159-50G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1159-50G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1186-50G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1186-50G>A
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18088
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

10-99003678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003678
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003678
    reference: chr 10
allele count: 129
allele frequency: 1.136844331641286e-3
allele num: 113472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*374+47G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1158+47G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.311+47G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1158+47G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1185+47G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1098+47G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1185+47G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1185+47G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1185+47G>A
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 24089
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16079
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8277
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS

10-99003685-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003685
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003685
    reference: chr 10
allele count: 215
allele frequency: 1.89120720593927e-3
allele num: 113684
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1185+40T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1185+40T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1185+40T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.311+40T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1185+40T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*374+40T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1098+40T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1158+40T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1158+40T>C
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 24169
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16111
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

10-99003691-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003691
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003691
    reference: chr 10
allele count: 1
allele frequency: 8.779168788299123e-6
allele num: 113906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1158+34T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1185+34T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1185+34T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1185+34T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.311+34T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1185+34T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1158+34T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1098+34T>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*374+34T>C
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-99003696-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003696
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003696
    reference: chr 10
allele count: 1
allele frequency: 8.763473841030585e-6
allele num: 114110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1158+29G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1185+29G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1185+29G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1158+29G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1185+29G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*374+29G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1098+29G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.311+29G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1185+29G>A
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

10-99003707-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003707
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003707
    reference: chr 10
allele count: 1
allele frequency: 8.698223822695406e-6
allele num: 114966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*374+18A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1158+18A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1185+18A>G
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1185+18A>G
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.311+18A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1098+18A>G
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1158+18A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1185+18A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1185+18A>G
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

10-99003708-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003708
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003708
    reference: chr 10
allele count: 1
allele frequency: 8.695047301057318e-6
allele num: 115008
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1158+17A>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1185+17A>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1098+17A>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1185+17A>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1185+17A>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.311+17A>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1185+17A>C
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*374+17A>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1158+17A>C
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ

10-99003715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003715
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003715
    reference: chr 10
allele count: 3
allele frequency: 2.591479216336685e-5
allele num: 115764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1185+10G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1185+10G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1098+10G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1185+10G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1158+10G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1158+10G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.311+10G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1185+10G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*374+10G>A
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum

10-99003724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003724
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003724
    reference: chr 10
allele count: 1
allele frequency: 8.547885253188362e-6
allele num: 116988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1158+1G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1158+1G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1098+1G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1185+1G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1185+1G>A
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.311+1G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*374+1G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1185+1G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1185+1G>A
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3955
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1185+1G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

10-99003732-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003732
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003732
    reference: chr 10
allele count: 7
allele frequency: 5.92376954843951e-5
allele num: 118168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1091T>C
  hgvsp: ENSP00000351058.3:p.Ile364Thr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*367T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1178T>C
  hgvsp: ENSP00000351333.4:p.Ile393Thr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1151T>C
  hgvsp: ENSP00000347526.5:p.Ile384Thr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1151T>C
  hgvsp: ENSP00000360066.1:p.Ile384Thr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1178T>C
  hgvsp: ENSP00000473567.1:p.Ile393Thr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1178T>C
  hgvsp: ENSP00000324468.8:p.Ile393Thr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.304T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1178T>C
  hgvsp: ENSP00000414774.2:p.Ile393Thr
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile393Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

10-99003739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003739
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003739
    reference: chr 10
allele count: 1
allele frequency: 8.399549784131571e-6
allele num: 119054
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1171C>T
  hgvsp: ENSP00000414774.2:p.Gln391Ter
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1171C>T
  hgvsp: ENSP00000351333.4:p.Gln391Ter
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1144C>T
  hgvsp: ENSP00000360066.1:p.Gln382Ter
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1144C>T
  hgvsp: ENSP00000347526.5:p.Gln382Ter
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1171C>T
  hgvsp: ENSP00000324468.8:p.Gln391Ter
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1171C>T
  hgvsp: ENSP00000473567.1:p.Gln391Ter
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1084C>T
  hgvsp: ENSP00000351058.3:p.Gln362Ter
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*360C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.297C>T
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24669
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln391Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

10-99003741-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003741
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003741
    reference: chr 10
allele count: 103
allele frequency: 8.636592319302364e-4
allele num: 119260
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1169A>G
  hgvsp: ENSP00000351333.4:p.Lys390Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1142A>G
  hgvsp: ENSP00000360066.1:p.Lys381Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1142A>G
  hgvsp: ENSP00000347526.5:p.Lys381Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1169A>G
  hgvsp: ENSP00000473567.1:p.Lys390Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*358A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1082A>G
  hgvsp: ENSP00000351058.3:p.Lys361Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.295A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1169A>G
  hgvsp: ENSP00000414774.2:p.Lys390Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1169A>G
  hgvsp: ENSP00000324468.8:p.Lys390Arg
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16256
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys390Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

10-99003744-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003744
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003744
    reference: chr 10
allele count: 1
allele frequency: 8.356732183446986e-6
allele num: 119664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1166A>G
  hgvsp: ENSP00000324468.8:p.Lys389Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*355A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1139A>G
  hgvsp: ENSP00000347526.5:p.Lys380Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1166A>G
  hgvsp: ENSP00000414774.2:p.Lys389Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1166A>G
  hgvsp: ENSP00000473567.1:p.Lys389Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1166A>G
  hgvsp: ENSP00000351333.4:p.Lys389Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.292A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1139A>G
  hgvsp: ENSP00000360066.1:p.Lys380Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1079A>G
  hgvsp: ENSP00000351058.3:p.Lys360Arg
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40410
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys389Arg
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

10-99003759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003759
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003759
    reference: chr 10
allele count: 2
allele frequency: 1.654533421575116e-5
allele num: 120880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1124C>T
  hgvsp: ENSP00000347526.5:p.Pro375Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1151C>T
  hgvsp: ENSP00000473567.1:p.Pro384Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1151C>T
  hgvsp: ENSP00000351333.4:p.Pro384Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*340C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1151C>T
  hgvsp: ENSP00000414774.2:p.Pro384Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.277C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1124C>T
  hgvsp: ENSP00000360066.1:p.Pro375Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1151C>T
  hgvsp: ENSP00000324468.8:p.Pro384Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1064C>T
  hgvsp: ENSP00000351058.3:p.Pro355Leu
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro384Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

10-99003760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003760
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003760
    reference: chr 10
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1150C>T
  hgvsp: ENSP00000473567.1:p.Pro384Ser
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.276C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1123C>T
  hgvsp: ENSP00000360066.1:p.Pro375Ser
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1150C>T
  hgvsp: ENSP00000351333.4:p.Pro384Ser
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*339C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1150C>T
  hgvsp: ENSP00000324468.8:p.Pro384Ser
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1150C>T
  hgvsp: ENSP00000414774.2:p.Pro384Ser
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1123C>T
  hgvsp: ENSP00000347526.5:p.Pro375Ser
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1063C>T
  hgvsp: ENSP00000351058.3:p.Pro355Ser
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3857
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro384Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

10-99003768-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003768
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003768
    reference: chr 10
allele count: 2
allele frequency: 1.650410126916539e-5
allele num: 121182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.268A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1142A>G
  hgvsp: ENSP00000324468.8:p.His381Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1115A>G
  hgvsp: ENSP00000360066.1:p.His372Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1115A>G
  hgvsp: ENSP00000347526.5:p.His372Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*331A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1142A>G
  hgvsp: ENSP00000473567.1:p.His381Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1055A>G
  hgvsp: ENSP00000351058.3:p.His352Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1142A>G
  hgvsp: ENSP00000414774.2:p.His381Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1142A>G
  hgvsp: ENSP00000351333.4:p.His381Arg
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41634
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His381Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-99003772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003772
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003772
    reference: chr 10
allele count: 4
allele frequency: 3.299513321785036e-5
allele num: 121230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1051G>A
  hgvsp: ENSP00000351058.3:p.Val351Ile
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1138G>A
  hgvsp: ENSP00000414774.2:p.Val380Ile
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1138G>A
  hgvsp: ENSP00000324468.8:p.Val380Ile
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.264G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1138G>A
  hgvsp: ENSP00000473567.1:p.Val380Ile
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1138G>A
  hgvsp: ENSP00000351333.4:p.Val380Ile
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1111G>A
  hgvsp: ENSP00000360066.1:p.Val371Ile
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1111G>A
  hgvsp: ENSP00000347526.5:p.Val371Ile
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*327G>A
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val380Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

10-99003773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003773
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003773
    reference: chr 10
allele count: 7
allele frequency: 5.772624564991506e-5
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.263C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1050C>T
  hgvsp: ENST00000358308.3:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1137C>T
  hgvsp: ENST00000358531.4:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1137C>T
  hgvsp: ENST00000479633.2:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*326C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1137C>T
  hgvsp: ENST00000316676.8:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1110C>T
  hgvsp: ENST00000371027.1:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1110C>T
  hgvsp: ENST00000355366.5:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1137C>T
  hgvsp: ENST00000453547.2:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His379His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

10-99003794-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003794
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003794
    reference: chr 10
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1029A>C
  hgvsp: ENST00000358308.3:c.1029A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1089A>C
  hgvsp: ENST00000355366.5:c.1089A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1116A>C
  hgvsp: ENST00000453547.2:c.1116A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1116A>C
  hgvsp: ENST00000479633.2:c.1116A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1089A>C
  hgvsp: ENST00000371027.1:c.1089A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1116A>C
  hgvsp: ENST00000358531.4:c.1116A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1116A>C
  hgvsp: ENST00000316676.8:c.1116A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*305A>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.242A>C
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala372Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

10-99003803-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003803
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003803
    reference: chr 10
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1080G>C
  hgvsp: ENST00000371027.1:c.1080G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.233G>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1107G>C
  hgvsp: ENST00000479633.2:c.1107G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1107G>C
  hgvsp: ENST00000358531.4:c.1107G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1107G>C
  hgvsp: ENST00000316676.8:c.1107G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1107G>C
  hgvsp: ENST00000453547.2:c.1107G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1020G>C
  hgvsp: ENST00000358308.3:c.1020G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*296G>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1080G>C
  hgvsp: ENST00000355366.5:c.1080G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8682
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr369Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

10-99003804-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003804
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003804
    reference: chr 10
allele count: 18
allele frequency: 1.482970554795762e-4
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.232C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1019C>T
  hgvsp: ENSP00000351058.3:p.Thr340Met
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1106C>T
  hgvsp: ENSP00000324468.8:p.Thr369Met
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1079C>T
  hgvsp: ENSP00000360066.1:p.Thr360Met
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1106C>T
  hgvsp: ENSP00000473567.1:p.Thr369Met
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*295C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1079C>T
  hgvsp: ENSP00000347526.5:p.Thr360Met
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1106C>T
  hgvsp: ENSP00000414774.2:p.Thr369Met
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1106C>T
  hgvsp: ENSP00000351333.4:p.Thr369Met
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr369Met
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

10-99003806-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003806
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003806
    reference: chr 10
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1077T>C
  hgvsp: ENST00000355366.5:c.1077T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1104T>C
  hgvsp: ENST00000479633.2:c.1104T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1104T>C
  hgvsp: ENST00000358531.4:c.1104T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1104T>C
  hgvsp: ENST00000316676.8:c.1104T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1077T>C
  hgvsp: ENST00000371027.1:c.1077T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*293T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.230T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1104T>C
  hgvsp: ENST00000453547.2:c.1104T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1017T>C
  hgvsp: ENST00000358308.3:c.1017T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His368His
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

10-99003807-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003807
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003807
    reference: chr 10
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1103A>T
  hgvsp: ENSP00000414774.2:p.His368Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1076A>T
  hgvsp: ENSP00000360066.1:p.His359Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1103A>T
  hgvsp: ENSP00000473567.1:p.His368Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1016A>T
  hgvsp: ENSP00000351058.3:p.His339Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*292A>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1103A>T
  hgvsp: ENSP00000351333.4:p.His368Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1076A>T
  hgvsp: ENSP00000347526.5:p.His359Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1103A>T
  hgvsp: ENSP00000324468.8:p.His368Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.229A>T
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41886
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His368Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

10-99003808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003808
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003808
    reference: chr 10
allele count: 3
allele frequency: 2.471495419495156e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1075C>T
  hgvsp: ENSP00000347526.5:p.His359Tyr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*291C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1102C>T
  hgvsp: ENSP00000351333.4:p.His368Tyr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1075C>T
  hgvsp: ENSP00000360066.1:p.His359Tyr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1015C>T
  hgvsp: ENSP00000351058.3:p.His339Tyr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1102C>T
  hgvsp: ENSP00000473567.1:p.His368Tyr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1102C>T
  hgvsp: ENSP00000414774.2:p.His368Tyr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.228C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1102C>T
  hgvsp: ENSP00000324468.8:p.His368Tyr
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His368Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

10-99003810-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003810
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003810
    reference: chr 10
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1100A>G
  hgvsp: ENSP00000473567.1:p.His367Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*289A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1100A>G
  hgvsp: ENSP00000414774.2:p.His367Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1073A>G
  hgvsp: ENSP00000347526.5:p.His358Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1100A>G
  hgvsp: ENSP00000324468.8:p.His367Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1100A>G
  hgvsp: ENSP00000351333.4:p.His367Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.226A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1073A>G
  hgvsp: ENSP00000360066.1:p.His358Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1013A>G
  hgvsp: ENSP00000351058.3:p.His338Arg
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His367Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP

10-99003811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003811
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003811
    reference: chr 10
allele count: 2119
allele frequency: 1.745699597970079e-2
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.225C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1099C>T
  hgvsp: ENSP00000351333.4:p.His367Tyr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1099C>T
  hgvsp: ENSP00000414774.2:p.His367Tyr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*288C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1099C>T
  hgvsp: ENSP00000473567.1:p.His367Tyr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1012C>T
  hgvsp: ENSP00000351058.3:p.His338Tyr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1072C>T
  hgvsp: ENSP00000360066.1:p.His358Tyr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1099C>T
  hgvsp: ENSP00000324468.8:p.His367Tyr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1072C>T
  hgvsp: ENSP00000347526.5:p.His358Tyr
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25469
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 1309
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 16327
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 8648
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His367Tyr
num of homozygotes: 26
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

10-99003816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003816
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003816
    reference: chr 10
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1094C>T
  hgvsp: ENSP00000473567.1:p.Thr365Ile
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1067C>T
  hgvsp: ENSP00000347526.5:p.Thr356Ile
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1094C>T
  hgvsp: ENSP00000414774.2:p.Thr365Ile
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1094C>T
  hgvsp: ENSP00000324468.8:p.Thr365Ile
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.220C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1094C>T
  hgvsp: ENSP00000351333.4:p.Thr365Ile
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*283C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.1007C>T
  hgvsp: ENSP00000351058.3:p.Thr336Ile
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1067C>T
  hgvsp: ENSP00000360066.1:p.Thr356Ile
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43230
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr365Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

10-99003835-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003835
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003835
    reference: chr 10
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*264T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1075T>C
  hgvsp: ENSP00000351333.4:p.Cys359Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.201T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1048T>C
  hgvsp: ENSP00000360066.1:p.Cys350Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.988T>C
  hgvsp: ENSP00000351058.3:p.Cys330Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1075T>C
  hgvsp: ENSP00000473567.1:p.Cys359Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1075T>C
  hgvsp: ENSP00000324468.8:p.Cys359Arg
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1048T>C
  hgvsp: ENSP00000347526.5:p.Cys350Arg
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1075T>C
  hgvsp: ENSP00000414774.2:p.Cys359Arg
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys359Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ

10-99003837-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003837
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003837
    reference: chr 10
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1046C>A
  hgvsp: ENSP00000347526.5:p.Ser349Tyr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1046C>A
  hgvsp: ENSP00000360066.1:p.Ser349Tyr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*262C>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1073C>A
  hgvsp: ENSP00000473567.1:p.Ser358Tyr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.986C>A
  hgvsp: ENSP00000351058.3:p.Ser329Tyr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1073C>A
  hgvsp: ENSP00000324468.8:p.Ser358Tyr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1073C>A
  hgvsp: ENSP00000351333.4:p.Ser358Tyr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1073C>A
  hgvsp: ENSP00000414774.2:p.Ser358Tyr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.199C>A
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8979
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser358Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

10-99003838-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003838
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003838
    reference: chr 10
allele count: 8
allele frequency: 6.590654451987082e-5
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.198T>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1045T>A
  hgvsp: ENSP00000347526.5:p.Ser349Thr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1045T>A
  hgvsp: ENSP00000360066.1:p.Ser349Thr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1072T>A
  hgvsp: ENSP00000351333.4:p.Ser358Thr
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*261T>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1072T>A
  hgvsp: ENSP00000414774.2:p.Ser358Thr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1072T>A
  hgvsp: ENSP00000473567.1:p.Ser358Thr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.985T>A
  hgvsp: ENSP00000351058.3:p.Ser329Thr
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1072T>A
  hgvsp: ENSP00000324468.8:p.Ser358Thr
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8978
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser358Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

10-99003842-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003842
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003842
    reference: chr 10
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1068A>G
  hgvsp: ENST00000479633.2:c.1068A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1068A>G
  hgvsp: ENST00000358531.4:c.1068A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1041A>G
  hgvsp: ENST00000355366.5:c.1041A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1068A>G
  hgvsp: ENST00000453547.2:c.1068A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1068A>G
  hgvsp: ENST00000316676.8:c.1068A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.194A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.981A>G
  hgvsp: ENST00000358308.3:c.981A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1041A>G
  hgvsp: ENST00000371027.1:c.1041A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*257A>G
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val356Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/10-99003844-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003844
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003844
    reference: chr 10
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.192G>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*255G>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1066G>T
  hgvsp: ENSP00000351333.4:p.Val356Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1066G>T
  hgvsp: ENSP00000324468.8:p.Val356Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.979G>T
  hgvsp: ENSP00000351058.3:p.Val327Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1066G>T
  hgvsp: ENSP00000414774.2:p.Val356Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1039G>T
  hgvsp: ENSP00000360066.1:p.Val347Leu
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1066G>T
  hgvsp: ENSP00000473567.1:p.Val356Leu
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1039G>T
  hgvsp: ENSP00000347526.5:p.Val347Leu
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val356Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-99003846-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003846
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003846
    reference: chr 10
allele count: 22
allele frequency: 1.812489701763058e-4
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1064G>A
  hgvsp: ENSP00000324468.8:p.Arg355Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1064G>A
  hgvsp: ENSP00000414774.2:p.Arg355Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1037G>A
  hgvsp: ENSP00000360066.1:p.Arg346Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.977G>A
  hgvsp: ENSP00000351058.3:p.Arg326Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1037G>A
  hgvsp: ENSP00000347526.5:p.Arg346Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1064G>A
  hgvsp: ENSP00000473567.1:p.Arg355Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*253G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1064G>A
  hgvsp: ENSP00000351333.4:p.Arg355Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.190G>A
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg355Gln
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-99003847-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003847
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003847
    reference: chr 10
allele count: 4
allele frequency: 3.29549012176836e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1036C>T
  hgvsp: ENSP00000360066.1:p.Arg346Trp
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1036C>T
  hgvsp: ENSP00000347526.5:p.Arg346Trp
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*252C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1063C>T
  hgvsp: ENSP00000473567.1:p.Arg355Trp
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1063C>T
  hgvsp: ENSP00000414774.2:p.Arg355Trp
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1063C>T
  hgvsp: ENSP00000324468.8:p.Arg355Trp
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1063C>T
  hgvsp: ENSP00000351333.4:p.Arg355Trp
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.189C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.976C>T
  hgvsp: ENSP00000351058.3:p.Arg326Trp
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg355Trp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

10-99003852-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003852
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003852
    reference: chr 10
allele count: 4
allele frequency: 3.295870274545994e-5
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1058G>A
  hgvsp: ENSP00000324468.8:p.Arg353Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1058G>A
  hgvsp: ENSP00000473567.1:p.Arg353Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1058G>A
  hgvsp: ENSP00000351333.4:p.Arg353Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.184G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*247G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1058G>A
  hgvsp: ENSP00000414774.2:p.Arg353Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.971G>A
  hgvsp: ENSP00000351058.3:p.Arg324Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1031G>A
  hgvsp: ENSP00000360066.1:p.Arg344Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1031G>A
  hgvsp: ENSP00000347526.5:p.Arg344Gln
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg353Gln
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

10-99003853-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003853
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003853
    reference: chr 10
allele count: 43
allele frequency: 3.543118933438803e-4
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1057C>T
  hgvsp: ENSP00000414774.2:p.Arg353Trp
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.183C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1057C>T
  hgvsp: ENSP00000324468.8:p.Arg353Trp
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.970C>T
  hgvsp: ENSP00000351058.3:p.Arg324Trp
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1030C>T
  hgvsp: ENSP00000360066.1:p.Arg344Trp
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1057C>T
  hgvsp: ENSP00000473567.1:p.Arg353Trp
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*246C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1030C>T
  hgvsp: ENSP00000347526.5:p.Arg344Trp
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1057C>T
  hgvsp: ENSP00000351333.4:p.Arg353Trp
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16926
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26509
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43216
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg353Trp
num of homozygotes: 1
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

10-99003856-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003856
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003856
    reference: chr 10
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.180A>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1054A>C
  hgvsp: ENSP00000324468.8:p.Lys352Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1054A>C
  hgvsp: ENSP00000414774.2:p.Lys352Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1054A>C
  hgvsp: ENSP00000473567.1:p.Lys352Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1027A>C
  hgvsp: ENSP00000347526.5:p.Lys343Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1054A>C
  hgvsp: ENSP00000351333.4:p.Lys352Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1027A>C
  hgvsp: ENSP00000360066.1:p.Lys343Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*243A>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.967A>C
  hgvsp: ENSP00000351058.3:p.Lys323Gln
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43233
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys352Gln
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

10-99003865-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003865
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003865
    reference: chr 10
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1018A>C
  hgvsp: ENSP00000347526.5:p.Lys340Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*234A>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1045A>C
  hgvsp: ENSP00000351333.4:p.Lys349Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1045A>C
  hgvsp: ENSP00000324468.8:p.Lys349Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1018A>C
  hgvsp: ENSP00000360066.1:p.Lys340Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.171A>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1045A>C
  hgvsp: ENSP00000414774.2:p.Lys349Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1045A>C
  hgvsp: ENSP00000473567.1:p.Lys349Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.958A>C
  hgvsp: ENSP00000351058.3:p.Lys320Gln
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26538
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys349Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

10-99003869-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003869
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003869
    reference: chr 10
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1014G>C
  hgvsp: ENST00000355366.5:c.1014G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.167G>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*230G>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1041G>C
  hgvsp: ENST00000358531.4:c.1041G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.954G>C
  hgvsp: ENST00000358308.3:c.954G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1041G>C
  hgvsp: ENST00000479633.2:c.1041G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1041G>C
  hgvsp: ENST00000453547.2:c.1041G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1014G>C
  hgvsp: ENST00000371027.1:c.1014G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1041G>C
  hgvsp: ENST00000316676.8:c.1041G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu347Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

10-99003870-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003870
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003870
    reference: chr 10
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1040T>A
  hgvsp: ENSP00000473567.1:p.Leu347Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.166T>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.953T>A
  hgvsp: ENSP00000351058.3:p.Leu318Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1040T>A
  hgvsp: ENSP00000351333.4:p.Leu347Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1013T>A
  hgvsp: ENSP00000347526.5:p.Leu338Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1013T>A
  hgvsp: ENSP00000360066.1:p.Leu338Gln
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*229T>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1040T>A
  hgvsp: ENSP00000324468.8:p.Leu347Gln
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1040T>A
  hgvsp: ENSP00000414774.2:p.Leu347Gln
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16926
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu347Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

10-99003872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003872
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003872
    reference: chr 10
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1038G>A
  hgvsp: ENST00000358531.4:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*227G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.1011G>A
  hgvsp: ENST00000355366.5:c.1011G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.164G>A
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.951G>A
  hgvsp: ENST00000358308.3:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.1011G>A
  hgvsp: ENST00000371027.1:c.1011G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1038G>A
  hgvsp: ENST00000479633.2:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1038G>A
  hgvsp: ENST00000316676.8:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1038G>A
  hgvsp: ENST00000453547.2:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln346Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

10-99003881-C-CTTAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003881
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003885
    reference: chr 10
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: CTTAG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*214_*217dupCTAA
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.998_1001dupCTAA
  hgvsp: ENSP00000347526.5:p.Lys334AsnfsTer2
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1025_1028dupCTAA
  hgvsp: ENSP00000473567.1:p.Lys343AsnfsTer2
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.151_154dupCTAA
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.998_1001dupCTAA
  hgvsp: ENSP00000360066.1:p.Lys334AsnfsTer2
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1025_1028dupCTAA
  hgvsp: ENSP00000324468.8:p.Lys343AsnfsTer2
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1025_1028dupCTAA
  hgvsp: ENSP00000351333.4:p.Lys343AsnfsTer2
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.938_941dupCTAA
  hgvsp: ENSP00000351058.3:p.Lys314AsnfsTer2
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1025_1028dupCTAA
  hgvsp: ENSP00000414774.2:p.Lys343AsnfsTer2
  variant of: http://identifiers.org/hgnc/48348
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys343AsnfsTer2
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

10-99003884-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003884
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003884
    reference: chr 10
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1026T>C
  hgvsp: ENST00000479633.2:c.1026T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.999T>C
  hgvsp: ENST00000355366.5:c.999T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.152T>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1026T>C
  hgvsp: ENST00000358531.4:c.1026T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.999T>C
  hgvsp: ENST00000371027.1:c.999T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.939T>C
  hgvsp: ENST00000358308.3:c.939T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1026T>C
  hgvsp: ENST00000316676.8:c.1026T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1026T>C
  hgvsp: ENST00000453547.2:c.1026T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*215T>C
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr342Thr
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

10-99003885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003885
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003885
    reference: chr 10
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1025C>T
  hgvsp: ENSP00000414774.2:p.Thr342Ile
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.998C>T
  hgvsp: ENSP00000360066.1:p.Thr333Ile
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.938C>T
  hgvsp: ENSP00000351058.3:p.Thr313Ile
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1025C>T
  hgvsp: ENSP00000473567.1:p.Thr342Ile
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.998C>T
  hgvsp: ENSP00000347526.5:p.Thr333Ile
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.151C>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1025C>T
  hgvsp: ENSP00000351333.4:p.Thr342Ile
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1025C>T
  hgvsp: ENSP00000324468.8:p.Thr342Ile
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*214C>T
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr342Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/10-99003891-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003891
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003891
    reference: chr 10
allele count: 1
allele frequency: 8.278008642241022e-6
allele num: 120802
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1019G>T
  hgvsp: ENSP00000414774.2:p.Cys340Phe
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.992G>T
  hgvsp: ENSP00000347526.5:p.Cys331Phe
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1019G>T
  hgvsp: ENSP00000351333.4:p.Cys340Phe
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1019G>T
  hgvsp: ENSP00000473567.1:p.Cys340Phe
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1019G>T
  hgvsp: ENSP00000324468.8:p.Cys340Phe
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.932G>T
  hgvsp: ENSP00000351058.3:p.Cys311Phe
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.992G>T
  hgvsp: ENSP00000360066.1:p.Cys331Phe
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*208G>T
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.145G>T
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys340Phe
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

10-99003893-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003893
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003893
    reference: chr 10
allele count: 2
allele frequency: 1.656808655168415e-5
allele num: 120714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.930A>G
  hgvsp: ENST00000358308.3:c.930A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.990A>G
  hgvsp: ENST00000355366.5:c.990A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*206A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1017A>G
  hgvsp: ENST00000453547.2:c.1017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.143A>G
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1017A>G
  hgvsp: ENST00000479633.2:c.1017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1017A>G
  hgvsp: ENST00000358531.4:c.1017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1017A>G
  hgvsp: ENST00000316676.8:c.1017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.990A>G
  hgvsp: ENST00000371027.1:c.990A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser339Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

10-99003893-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99003893
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99003893
    reference: chr 10
allele count: 11
allele frequency: 9.112447603426281e-5
allele num: 120714
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000351058
  ensembl transcript: ENST00000358308
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000358308.3:c.930A>C
  hgvsp: ENST00000358308.3:c.930A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000473327
  ensembl transcript: ENST00000492211
  gene symbol: ARHGAP19
  hgvsc: ENST00000492211.1:c.*206A>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000351333
  ensembl transcript: ENST00000358531
  gene symbol: ARHGAP19
  hgvsc: ENST00000358531.4:c.1017A>C
  hgvsp: ENST00000358531.4:c.1017A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000324468
  ensembl transcript: ENST00000316676
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000316676.8:c.1017A>C
  hgvsp: ENST00000316676.8:c.1017A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000414774
  ensembl transcript: ENST00000453547
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000453547.2:c.1017A>C
  hgvsp: ENST00000453547.2:c.1017A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000269891
  ensembl protein: ENSP00000473567
  ensembl transcript: ENST00000479633
  gene symbol: ARHGAP19-SLIT1
  hgvsc: ENST00000479633.2:c.1017A>C
  hgvsp: ENST00000479633.2:c.1017A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/48348
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213390
  ensembl transcript: ENST00000487035
  gene symbol: ARHGAP19
  hgvsc: ENST00000487035.1:n.143A>C
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000360066
  ensembl transcript: ENST00000371027
  gene symbol: ARHGAP19
  hgvsc: ENST00000371027.1:c.990A>C
  hgvsp: ENST00000371027.1:c.990A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000213390
  ensembl protein: ENSP00000347526
  ensembl transcript: ENST00000355366
  gene symbol: ARHGAP19
  hgvsc: ENST00000355366.5:c.990A>C
  hgvsp: ENST00000355366.5:c.990A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23724
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser339Ser
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 1957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10360
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2933
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34759
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 4311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.348759141589737e-4
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.103e0

DP
type: SiteQuality
SIO_000300: 3.907197e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.276e0

QD
type: SiteQuality
SIO_000300: 1.166e1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4312
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10352
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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African
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European (Non-Finnish)
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allele frequency: 1.498666187093487e-5
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South Asian
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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QD
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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Latino
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Other
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MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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East Asian
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Other
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QD
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 66730
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Other
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South Asian
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African
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MQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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VQSLOD
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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allele num: 66730
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FS
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MQRankSum
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DP
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QD
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ClippingRankSum
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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Other
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East Asian
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European (Non-Finnish)
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VQSLOD
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Latino
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Other
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European (Finnish)
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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DP
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MQRankSum
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QD
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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VQSLOD
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FS
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QD
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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allele num: 66730
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Other
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Latino
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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BaseQRankSum
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DP
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QD
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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African
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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QD
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FS
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

Latino
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DP
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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allele num: 11576
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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Other
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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QD
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ClippingRankSum
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DP
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FS
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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VQSLOD
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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African
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
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QD
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MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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DP
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MQRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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Other
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Latino
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.902417e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.565e1

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10092
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2935
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34725
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.499370088187654e-5
allele num: 66676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.998e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.373e0

VQSLOD
type: SiteQuality
SIO_000300: -3.911e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 3.90107e6

MQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

QD
type: SiteQuality
SIO_000300: 5.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2245
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1915
bin: 9.25e1
variant carriers: 18

GenotypeQuality
all individuals: 1164
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 140
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 37908
bin: 9.75e1
variant carriers: 29065

GenotypeQuality
all individuals: 1645
bin: 7.25e1
variant carriers: 8

European (Non-Finnish)
type: Population
allele count: 20628
allele frequency: 3.094880873792235e-1
allele num: 66652
num of homozygotes: 3204

Latino
type: Population
allele count: 2164
allele frequency: 1.872296245025091e-1
allele num: 11558
num of homozygotes: 205

East Asian
type: Population
allele count: 1041
allele frequency: 1.207936876305407e-1
allele num: 8618
num of homozygotes: 62

Other
type: Population
allele count: 251
allele frequency: 2.770419426048565e-1
allele num: 906
num of homozygotes: 30

African
type: Population
allele count: 2694
allele frequency: 2.596876807403123e-1
allele num: 10374
num of homozygotes: 373

South Asian
type: Population
allele count: 5368
allele frequency: 3.252544837615123e-1
allele num: 16504
num of homozygotes: 916

European (Finnish)
type: Population
allele count: 2077
allele frequency: 3.142208774583964e-1
allele num: 6610
num of homozygotes: 287

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.06e0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 4.048465e6

QD
type: SiteQuality
SIO_000300: 2.016e1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4965
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15835
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18153
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.516254245511887e-3
allele num: 16488
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

QD
type: SiteQuality
SIO_000300: 1.352e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.86e0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 1.365e0

DP
type: SiteQuality
SIO_000300: 2.309424e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

GenotypeQuality
all individuals: 3588
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18100
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5961
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4863
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029017992366875e-5
allele num: 66028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 3.112e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

DP
type: SiteQuality
SIO_000300: 2.23081e6

MQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

QD
type: SiteQuality
SIO_000300: 1.443e1

GenotypeQuality
all individuals: 4756
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3587
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8455
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.784735812133073e-5
allele num: 10220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.879e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

DP
type: SiteQuality
SIO_000300: 2.200882e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.925e1

VQSLOD
type: SiteQuality
SIO_000300: -1.212e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.846e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.481e1

GenotypeQuality
all individuals: 136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6897
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2609
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2714
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.621021826606511e-5
allele num: 65608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

DP
type: SiteQuality
SIO_000300: 2.193785e6

QD
type: SiteQuality
SIO_000300: 1.37e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2021
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2020
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4228
bin: 9.75e1
variant carriers: 129

Latino
type: Population
allele count: 5
allele frequency: 4.337265787647467e-4
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 108
allele frequency: 1.668726823238566e-3
allele num: 64720
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.207729468599034e-3
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.856254856254856e-4
allele num: 10296
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 6.422018348623853e-4
allele num: 10900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.537205081669691e-4
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.677e0

QD
type: SiteQuality
SIO_000300: 1.25e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

DP
type: SiteQuality
SIO_000300: 1.803008e6

FS
type: SiteQuality
SIO_000300: 1.824e0

GenotypeQuality
all individuals: 564
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4115
bin: 9.75e1
variant carriers: 214

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8305
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36684
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.671522719389525e-4
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 200
allele frequency: 1.941370607649e-2
allele num: 10302
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.175698625907056e-5
allele num: 64770
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.204819277108434e-3
allele num: 830
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

QD
type: SiteQuality
SIO_000300: 1.267e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.898e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 1.642e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

DP
type: SiteQuality
SIO_000300: 1.80396e6

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542686125080991e-5
allele num: 64822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

DP
type: SiteQuality
SIO_000300: 1.7977e6

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 3.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

QD
type: SiteQuality
SIO_000300: 1.464e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

GenotypeQuality
all individuals: 8351
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.699321047526673e-5
allele num: 10310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

VQSLOD
type: SiteQuality
SIO_000300: -1.48e-1

FS
type: SiteQuality
SIO_000300: 6.643e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

DP
type: SiteQuality
SIO_000300: 1.800384e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.84e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.21e-1

QD
type: SiteQuality
SIO_000300: 1.493e1

GenotypeQuality
all individuals: 1111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 451
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: -1.388e0

VQSLOD
type: SiteQuality
SIO_000300: -1.359e-1

FS
type: SiteQuality
SIO_000300: 4.556e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.27e-1

QD
type: SiteQuality
SIO_000300: 1.472e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

DP
type: SiteQuality
SIO_000300: 1.807204e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.403e0

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8364
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

QD
type: SiteQuality
SIO_000300: 1.583e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

MQRankSum
type: SiteQuality
SIO_000300: 4.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

DP
type: SiteQuality
SIO_000300: 1.807759e6

FS
type: SiteQuality
SIO_000300: 8.69e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3952
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.899671370578001e-4
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.883e0

FS
type: SiteQuality
SIO_000300: 2.409e0

QD
type: SiteQuality
SIO_000300: 2.524e1

DP
type: SiteQuality
SIO_000300: 1.815255e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 116
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 241
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2178
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525320317266626e-5
allele num: 65560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.461e0

VQSLOD
type: SiteQuality
SIO_000300: -6.462e-1

DP
type: SiteQuality
SIO_000300: 1.827004e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.62e-1

FS
type: SiteQuality
SIO_000300: 6.702e0

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3952
bin: 9.75e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.89073039121218e-4
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.460207612456747e-4
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
SIO_000300: 1.377e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.85e-1

DP
type: SiteQuality
SIO_000300: 1.839697e6

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 39923
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.718624025799516e-5
allele num: 14884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0268e1

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.498e0

DP
type: SiteQuality
SIO_000300: 1.848612e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

MQRankSum
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.122e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 103

GenotypeQuality
all individuals: 1121
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 49
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

Latino
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allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66120
num of homozygotes: 0

African
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allele count: 98
allele frequency: 9.426702577914583e-3
allele num: 10396
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

QD
type: SiteQuality
SIO_000300: 1.52e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

DP
type: SiteQuality
SIO_000300: 1.856208e6

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1890
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.525711302531976e-5
allele num: 15324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66214
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.850511e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.49e0

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.674e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.174364040503828e-5
allele num: 16196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.172e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.838e0

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.16e-1

DP
type: SiteQuality
SIO_000300: 1.865559e6

QD
type: SiteQuality
SIO_000300: 1.371e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.165228113440197e-5
allele num: 16220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66552
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.002e0

QD
type: SiteQuality
SIO_000300: 2.284e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

DP
type: SiteQuality
SIO_000300: 1.86611e6

VQSLOD
type: SiteQuality
SIO_000300: -2.458e0

FS
type: SiteQuality
SIO_000300: 1.454e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.92e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2074
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variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001921229586936e-5
allele num: 66624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.317e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.869491e6

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

FS
type: SiteQuality
SIO_000300: 3.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
all individuals: 696
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3855
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variant carriers: 4

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.501665616278023e-5
allele num: 66642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

FS
type: SiteQuality
SIO_000300: 2.454e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.85e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.259e1

DP
type: SiteQuality
SIO_000300: 1.870638e6

MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.001710324961742e-5
allele num: 66654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.871083e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

Latino
type: Population
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num of homozygotes: 0

Other
type: Population
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African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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FS
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.872002e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

QD
type: SiteQuality
SIO_000300: 1.159e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.26e0

VQSLOD
type: SiteQuality
SIO_000300: 7.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.245e0

FS
type: SiteQuality
SIO_000300: 7.79e-1

GenotypeQuality
all individuals: 454
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3852
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 8680
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41866
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.798884691491275e-4
allele num: 66708
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.872851e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 5.96e0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41883
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3836
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8683
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

DP
type: SiteQuality
SIO_000300: 1.871532e6

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.48e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

MQ
type: SiteQuality
SIO_000300: 5.985e1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 8684
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3835
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.871435e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.178e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.035e0

QD
type: SiteQuality
SIO_000300: 1.328e1

VQSLOD
type: SiteQuality
SIO_000300: 7.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41889
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8685
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3834
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496942079386017e-5
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.783e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.871496e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-3

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8687
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41887
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3830
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.57e-1

QD
type: SiteQuality
SIO_000300: 1.342e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.45e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

FS
type: SiteQuality
SIO_000300: 8.951000000000001e0

DP
type: SiteQuality
SIO_000300: 1.871341e6

GenotypeQuality
all individuals: 675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 9.75e1
variant carriers: 2093

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41778
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 134
allele frequency: 1.157367420970807e-2
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1558
allele frequency: 2.335411919894472e-2
allele num: 66712
num of homozygotes: 21

Other
type: Population
allele count: 24
allele frequency: 2.643171806167401e-2
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 232
allele frequency: 3.507710916238282e-2
allele num: 6614
num of homozygotes: 4

South Asian
type: Population
allele count: 111
allele frequency: 6.722383720930232e-3
allele num: 16512
num of homozygotes: 1

African
type: Population
allele count: 60
allele frequency: 5.765904285988853e-3
allele num: 10406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.971913e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

QD
type: SiteQuality
SIO_000300: 1.343e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.739e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8979
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.669999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.446e0

DP
type: SiteQuality
SIO_000300: 1.80269e6

FS
type: SiteQuality
SIO_000300: 4.707e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.02e-1

QD
type: SiteQuality
SIO_000300: 1.188e1

GenotypeQuality
all individuals: 455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43235
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8977
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.502e1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e-1

BaseQRankSum
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SIO_000300: -1.037e0

DP
type: SiteQuality
SIO_000300: 1.802595e6

FS
type: SiteQuality
SIO_000300: 4.859e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.318e0

VQSLOD
type: SiteQuality
SIO_000300: -4.007e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.232e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

DP
type: SiteQuality
SIO_000300: 1.802488e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.68787238131847e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 1.736e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.802699e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.34e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 4.965e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.802207e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.253e0

QD
type: SiteQuality
SIO_000300: 1.106e1

DP
type: SiteQuality
SIO_000300: 1.80216e6

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.82e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 22

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 14
allele frequency: 8.48073661255149e-4
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.496942079386017e-5
allele num: 66712
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66708
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South Asian
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African
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allele num: 10406
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Other
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MQ
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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Latino
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num of homozygotes: 0

African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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allele num: 6614
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South Asian
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Other
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MQ
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QD
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 2.423361201987156e-3
allele num: 16506
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East Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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QD
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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Latino
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Other
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East Asian
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European (Finnish)
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ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
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FS
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QD
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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Other
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African
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European (Finnish)
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South Asian
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MQ
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ClippingRankSum
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DP
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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Latino
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African
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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QD
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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FS
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QD
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InbreedingCoeff
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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South Asian
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DP
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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FS
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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DP
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MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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QD
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MQ
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InbreedingCoeff
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variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8920
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503714174009804e-5
allele num: 66502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.62e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.434e0

FS
type: SiteQuality
SIO_000300: 7.285e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.792181e6

QD
type: SiteQuality
SIO_000300: 1.215e1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8909
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008061605101673e-5
allele num: 66488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

VQSLOD
type: SiteQuality
SIO_000300: 9.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

QD
type: SiteQuality
SIO_000300: 1.353e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

DP
type: SiteQuality
SIO_000300: 1.790712e6