9-123954531-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123954531
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123954531
    reference: chr 9
allele count: 1
allele frequency: 8.339031671642289e-6
allele num: 119918
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.53-29C>T
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.53-29C>T
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2948
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34476
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7714
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11334
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

9-123954543-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123954543
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123954543
    reference: chr 9
allele count: 1
allele frequency: 8.354079296920687e-6
allele num: 119702
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.53-41G>A
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.53-41G>A
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34472
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 590
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6661
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6588
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-123954545-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123954545
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123954545
    reference: chr 9
allele count: 60
allele frequency: 5.017813236991319e-4
allele num: 119574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.53-43G>T
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.53-43G>T
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6539
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3569
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  variant carriers: 15
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 3266
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 57
  allele frequency: 5.676160127464649e-3
  allele num: 10042
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

9-123955588-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955588
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955588
    reference: chr 9
allele count: 1
allele frequency: 1.140615019618578e-5
allele num: 87672
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.52+51A>G
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.52+51A>G
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 289
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genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 464
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6147
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9394
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

9-123955590-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955590
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955590
    reference: chr 9
allele count: 4
allele frequency: 4.575926053034983e-5
allele num: 87414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.52+49C>T
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.52+49C>T
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10420
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12485
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6008
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6995
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8841
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4336
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3995
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4463
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6147
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5026
  num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

9-123955595-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955595
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955595
    reference: chr 9
allele count: 1
allele frequency: 1.136053803508134e-5
allele num: 88024
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.52+44A>G
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.52+44A>G
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 6151
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 13458
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

9-123955596-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955596
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955596
    reference: chr 9
allele count: 1
allele frequency: 1.135073779795687e-5
allele num: 88100
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.52+43A>C
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.52+43A>C
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1800
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  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 720
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-123955600-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955600
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955600
    reference: chr 9
allele count: 2
allele frequency: 2.260448925156536e-5
allele num: 88478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.52+39G>C
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.52+39G>C
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12906
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 158
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 893
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  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 722
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

9-123955604-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955604
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955604
    reference: chr 9
allele count: 1
allele frequency: 1.122258882679056e-5
allele num: 89106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.52+35A>G
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.52+35A>G
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13874
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4281
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3827
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6154
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 726
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

9-123955617-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955617
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955617
    reference: chr 9
allele count: 1
allele frequency: 1.084057845326627e-5
allele num: 92246
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.52+22T>C
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.52+22T>C
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20179
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 4295
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 740
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

9-123955620-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955620
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955620
    reference: chr 9
allele count: 5
allele frequency: 5.360550635761305e-5
allele num: 93274
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.52+19C>T
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.52+19C>T
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 6171
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 50386
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

9-123955640-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955640
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955640
    reference: chr 9
allele count: 1
allele frequency: 9.852993339376503e-6
allele num: 101492
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.51T>C
  hgvsp: ENST00000373840.4:c.51T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.51T>C
  hgvsp: ENST00000451303.1:c.51T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6180
  bin: 9.75e1
  variant carriers: 1
hgvs: c.51T>C
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

9-123955642-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955642
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955642
    reference: chr 9
allele count: 1
allele frequency: 9.777273705000098e-6
allele num: 102278
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.49A>T
  hgvsp: ENSP00000362946.4:p.Ile17Phe
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.49A>T
  hgvsp: ENSP00000400107.1:p.Ile17Phe
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
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  variant carriers: 0
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  bin: 2.25e1
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile17Phe
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5668
  num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

9-123955645-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955645
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955645
    reference: chr 9
allele count: 1
allele frequency: 9.624824346955668e-6
allele num: 103898
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.46A>G
  hgvsp: ENSP00000362946.4:p.Ile16Val
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.46A>G
  hgvsp: ENSP00000400107.1:p.Ile16Val
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6181
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile16Val
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8394
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum

9-123955700-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955700
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955700
    reference: chr 9
allele count: 1
allele frequency: 8.536647829130458e-6
allele num: 117142
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.-7-3T>C
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.-7-3T>C
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3627
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 40258
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 8.25e1
  variant carriers: 0
hgvs: c.-7-3T>C
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 890
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-123955714-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955714
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955714
    reference: chr 9
allele count: 1
allele frequency: 8.542773667754446e-6
allele num: 117058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.-7-17G>T
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.-7-17G>T
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3777
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 37952
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 6181
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3484
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.181195369714151e-4
  allele num: 8466
  num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

9-123955714-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955714
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955714
    reference: chr 9
allele count: 1
allele frequency: 8.542773667754446e-6
allele num: 117058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.-7-17G>A
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.-7-17G>A
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37952
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6181
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3484
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16190
  num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum

9-123955734-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955734
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955734
    reference: chr 9
allele count: 1
allele frequency: 8.610891055006372e-6
allele num: 116132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.-7-37T>C
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.-7-37T>C
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4880
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18540
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6184
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4303
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5778
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.574406448768814e-5
  allele num: 63516
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

9-123955735-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955735
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955735
    reference: chr 9
allele count: 169
allele frequency: 1.456570079120197e-3
allele num: 116026
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.-7-38C>A
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.-7-38C>A
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11747
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23386
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18824
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4851
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6338
  bin: 9.75e1
  variant carriers: 163
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5746
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4298
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
  type: Population
  allele count: 154
  allele frequency: 2.427337494483324e-3
  allele num: 63444
  num of homozygotes: 1
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

9-123955742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 123955742
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 123955742
    reference: chr 9
allele count: 1
allele frequency: 8.697769891799743e-6
allele num: 114972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000400107
  ensembl transcript: ENST00000451303
  gene symbol: RAB14
  hgvsc: ENST00000451303.1:c.-7-45G>A
  variant of: http://identifiers.org/hgnc/16524
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119396
  ensembl protein: ENSP00000362946
  ensembl transcript: ENST00000373840
  gene symbol: RAB14
  hgvsc: ENST00000373840.4:c.-7-45G>A
  variant of: http://identifiers.org/hgnc/16524
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12202
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5931
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4957
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4923
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3757
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6190
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5844
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.208605269518975e-4
  allele num: 8274
  num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

9-124043806-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043806
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043806
    reference: chr 9
allele count: 1
allele frequency: 1.322401481089659e-4
allele num: 7562
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+941C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-123G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.57G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-44G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-44G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13309G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-73G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.18G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-82G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-82G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-156G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-44G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.4003C>T
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13309G>A
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-124043814-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043814
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043814
    reference: chr 9
allele count: 2
allele frequency: 2.515723270440251e-4
allele num: 7950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-36A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-148A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-115A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3995T>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+933T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.65A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-36A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13317A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-65A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-74A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13317A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-74A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.26A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-36A>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

9-124043842-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043842
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043842
    reference: chr 9
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13345T>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+2T>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+2T>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13345T>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+905A>T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+2T>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3967A>T
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+2T>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+2T>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+2T>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+2T>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+2T>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+2T>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+2T>A
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-48+2T>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

9-124043843-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043843
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043843
    reference: chr 9
allele count: 2
allele frequency: 1.912045889101338e-4
allele num: 10460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+3A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+3A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13346A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+3A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+3A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3966T>C
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+3A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+3A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+3A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+3A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+3A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+3A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13346A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+904T>C
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-48+3A>G
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-124043855-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043855
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043855
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 12018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+15A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+15A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+892T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+15A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+15A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+15A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3954T>C
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+15A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+15A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13358A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+15A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+15A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13358A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+15A>G
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/9-124043860-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043860
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043859
    reference: chr 9
allele count: 743
allele frequency: 5.520059435364041e-2
allele num: 13460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+21delA
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13364delA
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3948delT
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13364delA
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+21delA
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+21delA
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+21delA
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+886delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+21delA
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+21delA
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+21delA
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+21delA
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+21delA
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+21delA
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 2.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 2.25e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 1.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
num of homozygotes: 27
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: CA
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-124043867-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043867
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043867
    reference: chr 9
allele count: 9083
allele frequency: 5.390504451038576e-1
allele num: 16850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13370C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+27C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+27C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+27C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+27C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+27C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13370C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+27C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3942G>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+27C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+27C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+27C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+880G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+27C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 2.5e0
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 2.75e1
  variant carriers: 928
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 2.25e1
  variant carriers: 1220
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.25e1
  variant carriers: 681
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.25e1
  variant carriers: 455
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.5e0
  variant carriers: 368
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.75e1
  variant carriers: 505
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.75e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 1.75e1
  variant carriers: 1103
genotype quality: GenotypeQuality
num of homozygotes: 2498
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

9-124043880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043880
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043880
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 16768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13383C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+867G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3929G>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+40C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+40C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+40C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+40C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+40C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+40C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+40C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+40C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13383C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+40C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+40C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD

9-124043882-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043882
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043882
    reference: chr 9
allele count: 1
allele frequency: 5.952380952380952e-5
allele num: 16800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+42C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+865G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+42C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+42C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13385C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+42C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13385C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+42C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+42C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3927G>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+42C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+42C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+42C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+42C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

9-124043899-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043899
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043899
    reference: chr 9
allele count: 2
allele frequency: 1.194600406164138e-4
allele num: 16742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+59G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+59G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3910C>T
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+59G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13402G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+59G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+59G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+848C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13402G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+59G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+59G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+59G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+59G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+59G>A
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-124043901-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043901
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043901
    reference: chr 9
allele count: 1
allele frequency: 5.969436485195797e-5
allele num: 16752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13404A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+61A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13404A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+61A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+61A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+61A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+61A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+61A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+61A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3908T>C
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+61A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+61A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+61A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+846T>C
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

9-124043902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043902
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043902
    reference: chr 9
allele count: 1
allele frequency: 5.970149253731343e-5
allele num: 16750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+62G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+62G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+62G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+62G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+62G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3907C>T
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13405G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+62G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+62G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+62G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+62G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13405G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+62G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+845C>T
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-124043933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043933
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043933
    reference: chr 9
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+93C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+93C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3876G>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13436C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+93C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+814G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+93C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+93C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13436C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+93C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+93C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+93C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+93C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+93C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

9-124043937-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043937
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043937
    reference: chr 9
allele count: 1
allele frequency: 6.135722174499939e-5
allele num: 16298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13440G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+97G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+97G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+97G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+97G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+97G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+97G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+97G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+810C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13440G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3872C>T
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+97G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+97G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+97G>A
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

9-124043959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043959
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043959
    reference: chr 9
allele count: 9
allele frequency: 5.493834696618239e-4
allele num: 16382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13462G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+119G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+119G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3850C>T
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+119G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+788C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+119G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+119G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+119G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+119G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+119G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+119G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13462G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+119G>A
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

9-124043962-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043962
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043962
    reference: chr 9
allele count: 2
allele frequency: 1.221747098350641e-4
allele num: 16370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+122T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+122T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3847A>G
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+122T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+122T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+122T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+122T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+122T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+122T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+122T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+122T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+785A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13465T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13465T>C
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

9-124043994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124043994
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124043994
    reference: chr 9
allele count: 1
allele frequency: 6.298815822625347e-5
allele num: 15876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+154C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+154C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+154C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-89+154C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+154C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3815G>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+154C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13497C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+154C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+154C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+154C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13497C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+154C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+753G>A
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

9-124044034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044034
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044034
    reference: chr 9
allele count: 4
allele frequency: 2.609943886206446e-4
allele num: 15326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+194G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+194G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+194G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+713C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+194G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3775C>T
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-88-119G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+194G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+194G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13537G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+194G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+194G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13537G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+194G>A
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

9-124044059-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044059
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044059
    reference: chr 9
allele count: 9
allele frequency: 5.928072717692003e-4
allele num: 15182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-88-94C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+219C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+219C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+219C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+219C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+219C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+219C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+219C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+688G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+219C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3750G>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13562C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13562C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+219C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ

9-124044071-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044071
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044071
    reference: chr 9
allele count: 2
allele frequency: 1.32013201320132e-4
allele num: 15150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+231C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-88-82C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+231C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13574C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3738G>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+231C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+231C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+231C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+231C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+231C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13574C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+231C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+231C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+676G>A
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

9-124044077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044077
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044077
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 15152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13580C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+237C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3732G>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+237C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-88-76C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+237C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+237C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+670G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+237C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+237C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+237C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+237C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13580C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+237C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

9-124044103-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044103
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044103
    reference: chr 9
allele count: 1
allele frequency: 6.587615283267457e-5
allele num: 15180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+263G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+263G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3706C>T
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+644C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+263G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+263G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+263G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+263G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+263G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13606G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13606G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+263G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-88-50G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+263G>A
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP

9-124044133-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044133
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044133
    reference: chr 9
allele count: 5
allele frequency: 3.257328990228013e-4
allele num: 15350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+293G>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+293G>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3676C>G
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+293G>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+293G>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+293G>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+614C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13636G>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-88-20G>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+293G>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+293G>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+293G>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13636G>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+293G>C
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

9-124044137-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044137
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044137
    reference: chr 9
allele count: 1
allele frequency: 6.502796202367018e-5
allele num: 15378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+297T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+297T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+297T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+297T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3672A>G
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+610A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+297T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+297T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+297T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13640T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-88-16T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13640T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+297T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+297T>C
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

9-124044149-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044149
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044149
    reference: chr 9
allele count: 1
allele frequency: 6.435006435006435e-5
allele num: 15540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+309C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-88-4C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13652C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+309C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+309C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+309C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13652C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+598G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3660G>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+309C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+309C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+309C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+309C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+309C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-88-4C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

9-124044150-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044150
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044150
    reference: chr 9
allele count: 1
allele frequency: 6.426735218508997e-5
allele num: 15560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+310A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-88-3A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+310A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+310A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3659T>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13653A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13653A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+310A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+310A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+597T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+310A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+310A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+310A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+310A>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-88-3A>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

9-124044191-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044191
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044191
    reference: chr 9
allele count: 1
allele frequency: 6.167509559639817e-5
allele num: 16214
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3618T>C
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+556T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+351A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-50A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+351A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+351A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+351A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+351A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+351A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+351A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13694A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13694A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+351A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+351A>G
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

9-124044246-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044246
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044246
    reference: chr 9
allele count: 2
allele frequency: 1.252191334835963e-4
allele num: 15972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+406G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+406G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13749G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+406G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+501C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3563C>T
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+406G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+406G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+406G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+406G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+406G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13749G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+406G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+15G>A
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

9-124044278-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044278
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044278
    reference: chr 9
allele count: 1
allele frequency: 6.428387760349704e-5
allele num: 15556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+438C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+438C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.52+438C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13781C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+438C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13781C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+47C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3531G>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+438C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+438C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+469G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-122+438C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.91+438C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+438C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

9-124044279-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044279
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044279
    reference: chr 9
allele count: 2
allele frequency: 1.286008230452675e-4
allele num: 15552
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3530T>C
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13782A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+439A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.92-438A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13782A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-121-438A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.53-438A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+439A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+439A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+468T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+439A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+48A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+439A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+439A>G
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

9-124044303-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044303
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044303
    reference: chr 9
allele count: 1
allele frequency: 6.967670011148272e-5
allele num: 14352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+463G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+463G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+463G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+463G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+463G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.53-414G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+463G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3506C>T
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+72G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.92-414G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-121-414G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+444C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13806G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13806G>A
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

9-124044332-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044332
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044332
    reference: chr 9
allele count: 2
allele frequency: 1.731601731601732e-4
allele num: 11550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+492C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+492C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.53-385C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-121-385C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.92-385C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3477G>A
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13835C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+415G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+101C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+492C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13835C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+492C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+492C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+492C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

9-124044369-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124044369
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124044369
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 7216
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000239593
  ensembl transcript: ENST00000437135
  gene symbol: RP11-477J21.6
  hgvsc: ENST00000437135.1:n.262+378T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.53-348A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-121-348A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000235865
  ensembl transcript: ENST00000414544
  gene symbol: GSN-AS1
  hgvsc: ENST00000414544.1:n.3440T>C
  variant of: http://identifiers.org/hgnc/23372
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.57+13872A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+138A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+529A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+529A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-10+13872A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+529A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+529A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+529A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.92-348A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+529A>G
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

9-124048390-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124048390
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124048390
    reference: chr 9
allele count: 2
allele frequency: 1.860119047619048e-4
allele num: 10752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+4550G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+4550G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+3562G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+4550G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+4550G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+4550G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+3562G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+2720G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+4550G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4159G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15851G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15851G>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

9-124048398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124048398
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124048398
    reference: chr 9
allele count: 1
allele frequency: 9.305788200260562e-5
allele num: 10746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15843C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4167C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+4558C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15843C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+3570C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+4558C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+4558C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+4558C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+4558C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+3570C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+4558C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+2728C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

9-124048418-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124048418
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124048418
    reference: chr 9
allele count: 1
allele frequency: 9.33184023889511e-5
allele num: 10716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+2748C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+4578C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15823C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4187C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+4578C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.18C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+4578C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15823C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+3590C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+4578C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+3590C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+4578C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+4578C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

9-124048420-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124048420
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124048420
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 10708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+4580C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+4580C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15821C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+4580C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4189C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+3592C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+4580C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+4580C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15821C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+3592C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.20C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+4580C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+2750C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

9-124048427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124048427
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124048427
    reference: chr 9
allele count: 1
allele frequency: 9.363295880149813e-5
allele num: 10680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4196C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15814C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+2757C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+4587C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+4587C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+4587C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+3599C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15814C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+4587C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+3599C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+4587C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.27C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+4587C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

9-124048461-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124048461
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124048461
    reference: chr 9
allele count: 579
allele frequency: 5.545977011494253e-2
allele num: 10440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+3633T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+3633T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+4621T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4230T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+4621T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+4621T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+4621T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.61T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+4621T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15780T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+2791T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15780T>C
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+4621T>C
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 2.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 2.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.61T>C
num of homozygotes: 25
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

9-124048464-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124048464
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124048464
    reference: chr 9
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+3636G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+4624G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15777G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+4624G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15777G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4233G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+4624G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.63+1G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+2794G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+3636G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+4624G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+4624G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+4624G>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.63+1G>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

9-124048472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124048472
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124048472
    reference: chr 9
allele count: 49
allele frequency: 4.787026182102384e-3
allele num: 10236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15769C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+4632C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+4632C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.63+9C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+4632C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+4632C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15769C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+4632C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+2802C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4241C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+4632C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+3644C>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+3644C>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-124048475-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124048475
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124048475
    reference: chr 9
allele count: 3
allele frequency: 2.950432730133753e-4
allele num: 10168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+3647G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+4635G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15766G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15766G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+4635G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+4635G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+4635G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+2805G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4244G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+4635G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.63+12G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+4635G>A
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+3647G>A
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

9-124048484-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124048484
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124048484
    reference: chr 9
allele count: 2
allele frequency: 1.987281399046105e-4
allele num: 10064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+4644G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+2814G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+4644G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4253G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15757G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+3656G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15757G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+4644G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+3656G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+4644G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.63+21G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+4644G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+4644G>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

9-124048988-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124048988
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124048988
    reference: chr 9
allele count: 1
allele frequency: 9.286775631500742e-5
allele num: 10768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4757A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+5148A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15253A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+5148A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15253A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000445823
  ensembl transcript: ENST00000545652
  gene symbol: GSN
  hgvsc: ENST00000545652.1:c.-37A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+5148A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+5148A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+5148A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+4160A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+5148A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+3318A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.63+525A>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+4160A>G
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

9-124048991-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124048991
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124048991
    reference: chr 9
allele count: 1
allele frequency: 9.286775631500742e-5
allele num: 10768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+4163A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+5151A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000445823
  ensembl transcript: ENST00000545652
  gene symbol: GSN
  hgvsc: ENST00000545652.1:c.-34A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+4163A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.63+528A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+3321A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+5151A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4760A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+5151A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+5151A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+5151A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+5151A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15250A>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15250A>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

9-124049067-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124049067
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124049067
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 10766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-10+5227G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-10+5227G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-39+5227G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.164+4239G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-10+5227G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-10+4836G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-15174G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-48+5227G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.277+3397G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-10+4239G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.63+604G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000445823
  ensembl transcript: ENST00000545652
  gene symbol: GSN
  hgvsc: ENST00000545652.1:c.15+28G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-15174G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-48+5227G>T
  variant of: http://identifiers.org/hgnc/4620
canonical: false
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

9-124062127-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124062127
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124062127
    reference: chr 9
allele count: 1
allele frequency: 3.342245989304813e-4
allele num: 2992
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.64-207C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-9-2114C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-9-2114C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-9-2114C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-38-216C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.165-2114C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-47-207C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362924
  ensembl transcript: ENST00000373818
  gene symbol: GSN
  hgvsc: ENST00000373818.4:c.-13C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-9-2114C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-2114C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-9-2114C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-2114C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.355-207C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-47-207C>G
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000445823
  ensembl transcript: ENST00000545652
  gene symbol: GSN
  hgvsc: ENST00000545652.1:c.16-2114C>G
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum

9-124062146-CCGCACCGCCCCGCGCCCGCGCTGCTTTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124062146
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124062118
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 3562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362924
  ensembl transcript: ENST00000373818
  gene symbol: GSN
  hgvsp: ENSP00000362924.4:p.His4ArgfsTer86
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000445823
  ensembl transcript: ENST00000545652
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18776
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His4ArgfsTer86
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CCGCACCGCCCCGCGCCCGCGCTGCTTTG
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

9-124062153-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124062153
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 124062153
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 3680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000475428
  gene symbol: GSN
  hgvsc: ENST00000475428.1:n.165-2088G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000483960
  gene symbol: GSN
  hgvsc: ENST00000483960.1:n.355-181G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000410657
  ensembl transcript: ENST00000449773
  gene symbol: GSN
  hgvsc: ENST00000449773.1:c.-47-181G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362929
  ensembl transcript: ENST00000373823
  gene symbol: GSN
  hgvsc: ENST00000373823.3:c.-9-2088G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000411293
  ensembl transcript: ENST00000436847
  gene symbol: GSN
  hgvsc: ENST00000436847.1:c.-47-181G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000340888
  ensembl transcript: ENST00000341272
  gene symbol: GSN
  hgvsc: ENST00000341272.2:c.-9-2088G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000445823
  ensembl transcript: ENST00000545652
  gene symbol: GSN
  hgvsc: ENST00000545652.1:c.16-2088G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362924
  ensembl transcript: ENST00000373818
  gene symbol: GSN
  hgvsc: ENST00000373818.4:c.14G>T
  hgvsp: ENSP00000362924.4:p.Arg5Leu
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000377882
  ensembl transcript: ENST00000394353
  gene symbol: GSN
  hgvsc: ENST00000394353.2:c.-38-190G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000409358
  ensembl transcript: ENST00000449733
  gene symbol: GSN
  hgvsc: ENST00000449733.1:c.-9-2088G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000416586
  ensembl transcript: ENST00000412819
  gene symbol: GSN
  hgvsc: ENST00000412819.1:c.-9-2088G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000362914
  ensembl transcript: ENST00000373808
  gene symbol: GSN
  hgvsc: ENST00000373808.2:c.-9-2088G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl protein: ENSP00000404226
  ensembl transcript: ENST00000432226
  gene symbol: GSN
  hgvsc: ENST00000432226.1:c.-9-2088G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477104
  gene symbol: GSN
  hgvsc: ENST00000477104.1:n.64-181G>T
  variant of: http://identifiers.org/hgnc/4620
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148180
  ensembl transcript: ENST00000477863
  gene symbol: GSN
  hgvsc: ENST00000477863.1:n.58-2088G>T
  variant of: http://identifiers.org/hgnc/4620
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg5Leu
num of homozygotes: 0
reference allele: G

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514738404677512e-5
allele num: 66018
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e0

DP
type: SiteQuality
SIO_000300: 2.914082e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.71e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: -1.271e0

QD
type: SiteQuality
SIO_000300: 1.119e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517036317849449e-5
allele num: 65918
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.521e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.921e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

FS
type: SiteQuality
SIO_000300: 7.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 2.905203e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.769285208775655e-4
allele num: 11304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518649009840846e-5
allele num: 65848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.903493e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.476e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.514e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.93e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4834
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5054
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7072
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13444
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.120710862281037e-5
allele num: 47154
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

DP
type: SiteQuality
SIO_000300: 1.121897e6

QD
type: SiteQuality
SIO_000300: 1.297e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
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Latino
type: Population
allele count: 0
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allele num: 9350
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South Asian
type: Population
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allele frequency: 2.97929390734396e-4
allele num: 13426
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4822
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47010
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DP
type: SiteQuality
SIO_000300: 1.125406e6

FS
type: SiteQuality
SIO_000300: 1.117e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.123e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.35e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5082
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.111397322748195e-5
allele num: 47362
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4870
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7116
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 1.143742e6

QD
type: SiteQuality
SIO_000300: 1.475e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.187e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5090
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4860
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13484
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Latino
type: Population
allele count: 1
allele frequency: 1.058649163667161e-4
allele num: 9446
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MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.168e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 1.149393e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.873e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7150
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.200621692010418e-5
allele num: 47612
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South Asian
type: Population
allele count: 0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5118
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4876
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QD
type: SiteQuality
SIO_000300: 9.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-2

DP
type: SiteQuality
SIO_000300: 1.175897e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

VQSLOD
type: SiteQuality
SIO_000300: -8.312e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47920
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7218
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South Asian
type: Population
allele count: 1
allele frequency: 7.374631268436578e-5
allele num: 13560
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9528
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5224
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MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.774e0

DP
type: SiteQuality
SIO_000300: 1.200628e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.705e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.28e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7428
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.25163161711385e-5
allele num: 13790
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5638
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FS
type: SiteQuality
SIO_000300: 2.622e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

QD
type: SiteQuality
SIO_000300: 1.307e1

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

DP
type: SiteQuality
SIO_000300: 1.282155e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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South Asian
type: Population
allele count: 5
allele frequency: 3.601267646211466e-4
allele num: 13884
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.568e0

QD
type: SiteQuality
SIO_000300: 9.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

DP
type: SiteQuality
SIO_000300: 1.303704e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
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South Asian
type: Population
allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.817917393833624e-5
allele num: 55008
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Latino
type: Population
allele count: 0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6902
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
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MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.149e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.176e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 1.429575e6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7014
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African
type: Population
allele count: 0
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Other
type: Population
allele count: 0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10486
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.804728388377549e-5
allele num: 55410
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South Asian
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allele count: 0
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QD
type: SiteQuality
SIO_000300: 7.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

FS
type: SiteQuality
SIO_000300: 2.114e0

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.249e-1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10570
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7230
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.776388247415355e-5
allele num: 56294
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Other
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allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.12e-1

FS
type: SiteQuality
SIO_000300: 2.251e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.209e1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559916388481577e-5
allele num: 64106
num of homozygotes: 0

Latino
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African
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East Asian
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
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South Asian
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allele count: 0
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.039e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.117e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQRankSum
type: SiteQuality
SIO_000300: -1.358e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.590593e6

QD
type: SiteQuality
SIO_000300: 1.667e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

Latino
type: Population
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African
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allele count: 0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64058
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6414
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.567415e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

FS
type: SiteQuality
SIO_000300: 7.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.75e0

QD
type: SiteQuality
SIO_000300: 9.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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Latino
type: Population
allele count: 0
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allele num: 11122
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East Asian
type: Population
allele count: 1
allele frequency: 1.181195369714151e-4
allele num: 8466
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European (Finnish)
type: Population
allele count: 0
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allele num: 6414
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64058
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.76e-1

DP
type: SiteQuality
SIO_000300: 1.567415e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6366
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Other
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African
type: Population
allele count: 0
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Latino
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South Asian
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.317e0

DP
type: SiteQuality
SIO_000300: 1.477975e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.564e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 8.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.762e-1

FS
type: SiteQuality
SIO_000300: 1.298e0

QD
type: SiteQuality
SIO_000300: 1.271e1

Other
type: Population
allele count: 2
allele frequency: 2.267573696145125e-3
allele num: 882
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South Asian
type: Population
allele count: 0
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Latino
type: Population
allele count: 1
allele frequency: 9.051412020275162e-5
allele num: 11048
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East Asian
type: Population
allele count: 0
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European (Finnish)
type: Population
allele count: 11
allele frequency: 1.729016032694121e-3
allele num: 6362
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.016880211511084e-4
allele num: 9834
num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 4.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
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SIO_000300: 1.479493e6

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10948
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -9.65e-1

BaseQRankSum
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VQSLOD
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QD
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SIO_000300: 1.089e1

ClippingRankSum
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SIO_000300: 4.71e-1

MQRankSum
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SIO_000300: -1.468e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.898550724637681e-4
allele num: 3450
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

VQSLOD
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FS
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ReadPosRankSum
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DP
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MQ
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.792114695340502e-3
allele num: 1116
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -3.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.21e-1

FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 1.93933e5

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.429543245869776e-4
allele num: 4116
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.52e-1

FS
type: SiteQuality
SIO_000300: 4.828e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
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MQ
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SIO_000300: 5.891e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -7.123e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

DP
type: SiteQuality
SIO_000300: 2.13369e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-2

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4148
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.132196162046908e-3
allele num: 938
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQ
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BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -2.24e-2

FS
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.3e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

ClippingRankSum
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SIO_000300: 1.01e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4546
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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QD
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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DP
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MQ
type: SiteQuality
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MQRankSum
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SIO_000300: 3.22e-1

GenotypeDepth
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variant carriers: 20

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

East Asian
type: Population
allele count: 67
allele frequency: 1.401673640167364e-1
allele num: 478
num of homozygotes: 3

European (Finnish)
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allele count: 46
allele frequency: 2.764423076923077e-2
allele num: 1664
num of homozygotes: 0

European (Non-Finnish)
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allele count: 66
allele frequency: 1.372141372141372e-2
allele num: 4810
num of homozygotes: 0

Latino
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allele count: 56
allele frequency: 1.971830985915493e-1
allele num: 284
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South Asian
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allele count: 491
allele frequency: 9.661550570641479e-2
allele num: 5082
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Other
type: Population
allele count: 6
allele frequency: 3.658536585365853e-2
allele num: 164
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African
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allele count: 11
allele frequency: 1.124744376278119e-2
allele num: 978
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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MQRankSum
type: SiteQuality
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VQSLOD
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DP
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 2.04e-1

QD
type: SiteQuality
SIO_000300: 1.702e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.29e-2

GenotypeDepth
all individuals: 188
bin: 6.25e1
variant carriers: 163

GenotypeDepth
all individuals: 75
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variant carriers: 70

GenotypeDepth
all individuals: 144
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variant carriers: 132

GenotypeDepth
all individuals: 53
bin: 8.75e1
variant carriers: 49

GenotypeDepth
all individuals: 95
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variant carriers: 90

GenotypeQuality
all individuals: 150
bin: 7.25e1
variant carriers: 114

GenotypeQuality
all individuals: 5007
bin: 9.75e1
variant carriers: 4826

GenotypeQuality
all individuals: 221
bin: 7.75e1
variant carriers: 184

GenotypeQuality
all individuals: 324
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1216
bin: 6.25e1
variant carriers: 237

GenotypeQuality
all individuals: 205
bin: 4.75e1
variant carriers: 158

GenotypeQuality
all individuals: 256
bin: 5.25e1
variant carriers: 232

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 131

GenotypeQuality
all individuals: 902
bin: 7.5e0
variant carriers: 138

GenotypeQuality
all individuals: 603
bin: 2.25e1
variant carriers: 73

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 88

GenotypeQuality
all individuals: 149
bin: 3.25e1
variant carriers: 83

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 70

GenotypeQuality
all individuals: 213
bin: 8.25e1
variant carriers: 173

GenotypeQuality
all individuals: 167
bin: 3.75e1
variant carriers: 113

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 57

GenotypeQuality
all individuals: 138
bin: 9.25e1
variant carriers: 120

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 74

GenotypeQuality
all individuals: 365
bin: 6.75e1
variant carriers: 208

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 93

East Asian
type: Population
allele count: 312
allele frequency: 6.341463414634146e-1
allele num: 492
num of homozygotes: 101

Latino
type: Population
allele count: 134
allele frequency: 4.35064935064935e-1
allele num: 308
num of homozygotes: 29

European (Finnish)
type: Population
allele count: 940
allele frequency: 5.535924617196702e-1
allele num: 1698
num of homozygotes: 251

South Asian
type: Population
allele count: 4490
allele frequency: 6.15237051246917e-1
allele num: 7298
num of homozygotes: 1381

European (Non-Finnish)
type: Population
allele count: 2851
allele frequency: 4.913822819717339e-1
allele num: 5802
num of homozygotes: 680

African
type: Population
allele count: 255
allele frequency: 2.410207939508507e-1
allele num: 1058
num of homozygotes: 29

Other
type: Population
allele count: 101
allele frequency: 5.20618556701031e-1
allele num: 194
num of homozygotes: 27

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e0

DP
type: SiteQuality
SIO_000300: 3.17853e5

QD
type: SiteQuality
SIO_000300: 2.023e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.176e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 136
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variant carriers: 0

GenotypeDepth
all individuals: 97
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variant carriers: 0

GenotypeDepth
all individuals: 7
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variant carriers: 0

GenotypeDepth
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 1727
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GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 208
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GenotypeQuality
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GenotypeQuality
all individuals: 145
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 786
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variant carriers: 0

GenotypeQuality
all individuals: 127
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variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 5084
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.045e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.41e-2

DP
type: SiteQuality
SIO_000300: 2.3143e5

MQ
type: SiteQuality
SIO_000300: 5.344e1

VQSLOD
type: SiteQuality
SIO_000300: -1.084e0

GenotypeDepth
all individuals: 99
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 2740
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variant carriers: 1

GenotypeDepth
all individuals: 9
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variant carriers: 0

GenotypeDepth
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 644
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variant carriers: 1

GenotypeQuality
all individuals: 1780
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GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 164
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GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 729
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variant carriers: 0

GenotypeQuality
all individuals: 167
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GenotypeQuality
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GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 5235
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variant carriers: 0

GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 795
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variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.324854266030737e-4
allele num: 7548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1018
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.32622e5

VQSLOD
type: SiteQuality
SIO_000300: 2.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

QD
type: SiteQuality
SIO_000300: 1.628e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.7e-1

GenotypeDepth
all individuals: 218
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
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variant carriers: 0

GenotypeDepth
all individuals: 23
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variant carriers: 0

GenotypeDepth
all individuals: 7
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variant carriers: 0

GenotypeDepth
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 377
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GenotypeQuality
all individuals: 642
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 192
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variant carriers: 0

GenotypeQuality
all individuals: 218
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 1867
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GenotypeQuality
all individuals: 5908
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variant carriers: 0

GenotypeQuality
all individuals: 62
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GenotypeQuality
all individuals: 863
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GenotypeQuality
all individuals: 188
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 118
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 974
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.618486514794449e-4
allele num: 7638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5522
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

DP
type: SiteQuality
SIO_000300: 2.36398e5

VQSLOD
type: SiteQuality
SIO_000300: -1.797e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.2458e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeDepth
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
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variant carriers: 0

GenotypeDepth
all individuals: 3551
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variant carriers: 0

GenotypeDepth
all individuals: 98
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GenotypeDepth
all individuals: 15
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GenotypeQuality
all individuals: 355
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 182
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GenotypeQuality
all individuals: 117
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GenotypeQuality
all individuals: 1889
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 217
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 867
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.30821559392988e-4
allele num: 7644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.01e0

MQRankSum
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SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 2.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.12e-2

QD
type: SiteQuality
SIO_000300: 1.741e1

DP
type: SiteQuality
SIO_000300: 2.36421e5

GenotypeDepth
all individuals: 70
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 15
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 1849
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GenotypeQuality
all individuals: 61
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GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 314
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.5e0
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GenotypeQuality
all individuals: 867
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GenotypeQuality
all individuals: 19
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 182
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GenotypeQuality
all individuals: 5935
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.808972503617945e-4
allele num: 5528
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.36241e5

BaseQRankSum
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SIO_000300: -3.967e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

GenotypeDepth
all individuals: 15
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variant carriers: 0

GenotypeDepth
all individuals: 93
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 178
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.098901098901099e-3
allele num: 910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
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MQ
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MQRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 1.174015131750587e-3
allele num: 7666
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

ReadPosRankSum
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QD
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FS
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 486
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.188183807439825e-3
allele num: 914
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5346
num of homozygotes: 0

ClippingRankSum
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QD
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -2.37e-2

MQ
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.901863826550019e-4
allele num: 5258
num of homozygotes: 0

African
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num of homozygotes: 0

Other
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East Asian
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ClippingRankSum
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DP
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MQRankSum
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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East Asian
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South Asian
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African
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Other
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Latino
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 6.507592190889371e-3
allele num: 922
num of homozygotes: 0

Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 5156
num of homozygotes: 0

African
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allele frequency: 2.164502164502165e-3
allele num: 924
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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ClippingRankSum
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MQ
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VQSLOD
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FS
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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South Asian
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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Latino
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East Asian
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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FS
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SIO_000300: 8.85e-1

DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

European (Finnish)
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allele count: 4
allele frequency: 6.289308176100629e-3
allele num: 636
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.92975685063682e-4
allele num: 5182
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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Other
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num of homozygotes: 0

East Asian
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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DP
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MQ
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ClippingRankSum
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SIO_000300: -8.149999999999999e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 7666
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African
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European (Non-Finnish)
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East Asian
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Latino
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Other
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DP
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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African
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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QD
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DP
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MQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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Latino
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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ClippingRankSum
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MQRankSum
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DP
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

African
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East Asian
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European (Non-Finnish)
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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FS
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MQRankSum
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MQ
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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South Asian
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BaseQRankSum
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FS
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InbreedingCoeff
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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African
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele num: 1434
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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Other
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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MQ
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FS
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 5132
num of homozygotes: 0

Latino
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Other
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InbreedingCoeff
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Latino
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Other
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South Asian
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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Latino
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South Asian
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East Asian
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QD
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DP
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FS
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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Latino
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African
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European (Non-Finnish)
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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African
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South Asian
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BaseQRankSum
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Finnish)
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South Asian
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QD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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QD
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MQ
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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South Asian
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African
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InbreedingCoeff
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DP
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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African
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DP
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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VQSLOD
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VQSLOD
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.076e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.690000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.8e0

DP
type: SiteQuality
SIO_000300: 9.1512e4

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

GenotypeDepth
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3769
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17962
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.64e-2

MQ
type: SiteQuality
SIO_000300: 4.155e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

DP
type: SiteQuality
SIO_000300: 9.7743e4

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 2.26e0